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. 2002 Aug;3(4):366–368. doi: 10.1002/cfg.190

The Use of Microarray Technology for the Analysis of Streptococcus Pneumoniae

Jackie McCluskey 1, Christopher G Dowson 2, Timothy J Mitchell 1
PMCID: PMC2448440  PMID: 18629276

Abstract

Streptococcus pneumoniae is an important human pathogen associated with pneumonia, septicaemia, meningitis and otitis media. It is estimated to result in over 3 million child deaths worldwide every year and an even greater number of deaths among the elderly. Prior to the complete sequencing of the genomes of S. pneumoniae TIGR4 (serotype 4) and S. pneumoniae R6 (serotype 2), we designed a custom miniarray consisting of 497 pneumococcal genes. The overall objectives of our microarray investigations were, first, to assess the genetic diversity between different S. pneumoniae serotypes, clinical isolates and also different Streptococcus species; second, we aimed to use microarray technology to examine the mechanisms by which environmental factors influence pneumococcal gene expression, and ultimately to further the understanding of how these changes in gene expression are achieved and how they may alter the virulence of the organism.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Claverys J. P., Prudhomme M., Mortier-Barrière I., Martin B. Adaptation to the environment: Streptococcus pneumoniae, a paradigm for recombination-mediated genetic plasticity? Mol Microbiol. 2000 Jan;35(2):251–259. doi: 10.1046/j.1365-2958.2000.01718.x. [DOI] [PubMed] [Google Scholar]
  2. Hakenbeck R., Balmelle N., Weber B., Gardès C., Keck W., de Saizieu A. Mosaic genes and mosaic chromosomes: intra- and interspecies genomic variation of Streptococcus pneumoniae. Infect Immun. 2001 Apr;69(4):2477–2486. doi: 10.1128/IAI.69.4.2477-2486.2001. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Hoskins J., Alborn W. E., Jr, Arnold J., Blaszczak L. C., Burgett S., DeHoff B. S., Estrem S. T., Fritz L., Fu D. J., Fuller W. Genome of the bacterium Streptococcus pneumoniae strain R6. J Bacteriol. 2001 Oct;183(19):5709–5717. doi: 10.1128/JB.183.19.5709-5717.2001. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Mitchell T. J. Virulence factors and the pathogenesis of disease caused by Streptococcus pneumoniae. Res Microbiol. 2000 Jul-Aug;151(6):413–419. doi: 10.1016/s0923-2508(00)00175-3. [DOI] [PubMed] [Google Scholar]
  5. Novak R., Cauwels A., Charpentier E., Tuomanen E. Identification of a Streptococcus pneumoniae gene locus encoding proteins of an ABC phosphate transporter and a two-component regulatory system. J Bacteriol. 1999 Feb;181(4):1126–1133. doi: 10.1128/jb.181.4.1126-1133.1999. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Oggioni M. R., Pozzi G. Comparative genomics for identification of clone-specific sequence blocks in Streptococcus pneumoniae. FEMS Microbiol Lett. 2001 Jun 25;200(2):137–143. doi: 10.1111/j.1574-6968.2001.tb10705.x. [DOI] [PubMed] [Google Scholar]
  7. Peterson S., Cline R. T., Tettelin H., Sharov V., Morrison D. A. Gene expression analysis of the Streptococcus pneumoniae competence regulons by use of DNA microarrays. J Bacteriol. 2000 Nov;182(21):6192–6202. doi: 10.1128/jb.182.21.6192-6202.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Tettelin H., Nelson K. E., Paulsen I. T., Eisen J. A., Read T. D., Peterson S., Heidelberg J., DeBoy R. T., Haft D. H., Dodson R. J. Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science. 2001 Jul 20;293(5529):498–506. doi: 10.1126/science.1061217. [DOI] [PubMed] [Google Scholar]
  9. Whatmore A. M., Efstratiou A., Pickerill A. P., Broughton K., Woodard G., Sturgeon D., George R., Dowson C. G. Genetic relationships between clinical isolates of Streptococcus pneumoniae, Streptococcus oralis, and Streptococcus mitis: characterization of "Atypical" pneumococci and organisms allied to S. mitis harboring S. pneumoniae virulence factor-encoding genes. Infect Immun. 2000 Mar;68(3):1374–1382. doi: 10.1128/iai.68.3.1374-1382.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. de Saizieu A., Gardès C., Flint N., Wagner C., Kamber M., Mitchell T. J., Keck W., Amrein K. E., Lange R. Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide. J Bacteriol. 2000 Sep;182(17):4696–4703. doi: 10.1128/jb.182.17.4696-4703.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]

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