Abstract
In foot-and-mouth disease virus (FMDV)-infected cells, the disappearance of nuclear protein histone H3 and the simultaneous appearance of a new chromatin-associated protein termed Pi can be observed (P. R. Grigera and S. G. Tisminetzky, Virology 136:10-19, 1984). We sequenced the amino terminus of protein Pi and showed that Pi derives from histone H3 by proteolytic cleavage. The 20 N-terminal amino acid residues of histone H3 are specifically cleaved off early during infection. Truncated histone H3 remains chromatin associated. In addition, we showed that the histone H3-Pi transition is catalyzed by the FMDV 3C protease. The only known function of the viral 3C protease was, until now, the processing of the viral polyprotein. The viral 3C protease is the only FMDV protein required to induce the histone H3-Pi transition, as well as being the only viral protein capable of cleaving histone H3. No viral precursor fusion protein is needed for this specific cleavage as was reported for the processing of the poliovirus P1 precursor polyprotein by 3C/D protease. As the deleted part of the histone H3 corresponds to the presumed regulatory domain involved in the regulation of transcriptionally active chromatin in eucaryotes, it seems possible that this specific cleavage of histone H3 is related to the host cell transcription shutoff reported for several picornaviruses.
Full text
PDF![748](https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e5/249169/5a2f61099680/jvirol00057-0294.png)
![749](https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e5/249169/55fd6e10a096/jvirol00057-0295.png)
![750](https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e5/249169/78ed810d2f52/jvirol00057-0296.png)
![751](https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e5/249169/7db39cd933b1/jvirol00057-0297.png)
![752](https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e5/249169/2b10954d467a/jvirol00057-0298.png)
![753](https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e5/249169/0cedc597d012/jvirol00057-0299.png)
![754](https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e5/249169/e4f7b865d3c4/jvirol00057-0300.png)
![755](https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e5/249169/f593dad71d4e/jvirol00057-0301.png)
![756](https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e5/249169/ad3863774972/jvirol00057-0302.png)
Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Allegra P., Sterner R., Clayton D. F., Allfrey V. G. Affinity chromatographic purification of nucleosomes containing transcriptionally active DNA sequences. J Mol Biol. 1987 Jul 20;196(2):379–388. doi: 10.1016/0022-2836(87)90698-x. [DOI] [PubMed] [Google Scholar]
- Alonso W. R., Nelson D. A. A novel yeast histone deacetylase: partial characterization and development of an activity assay. Biochim Biophys Acta. 1986 Mar 26;866(2-3):161–169. doi: 10.1016/0167-4781(86)90113-2. [DOI] [PubMed] [Google Scholar]
- Argos P., Kamer G., Nicklin M. J., Wimmer E. Similarity in gene organization and homology between proteins of animal picornaviruses and a plant comovirus suggest common ancestry of these virus families. Nucleic Acids Res. 1984 Sep 25;12(18):7251–7267. doi: 10.1093/nar/12.18.7251. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bienz K., Egger D., Rasser Y., Bossart W. Accumulation of poliovirus proteins in the host cell nucleus. Intervirology. 1982;18(4):189–196. doi: 10.1159/000149324. [DOI] [PubMed] [Google Scholar]
- Black T. L., Safer B., Hovanessian A., Katze M. G. The cellular 68,000-Mr protein kinase is highly autophosphorylated and activated yet significantly degraded during poliovirus infection: implications for translational regulation. J Virol. 1989 May;63(5):2244–2251. doi: 10.1128/jvi.63.5.2244-2251.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bonneau A. M., Sonenberg N. Proteolysis of the p220 component of the cap-binding protein complex is not sufficient for complete inhibition of host cell protein synthesis after poliovirus infection. J Virol. 1987 Apr;61(4):986–991. doi: 10.1128/jvi.61.4.986-991.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brandt W. F., Böhm L., Von Holt C. Proteolytic degradation of histones and site of cleavage in histone F2al and F3. FEBS Lett. 1975 Mar 1;51(1):88–93. doi: 10.1016/0014-5793(75)80860-x. [DOI] [PubMed] [Google Scholar]
- Brown F., Martin S. J., Underwood B. A study of the kinetics of protein and RNA synthesis induced by foot-and-mouth disease virus. Biochim Biophys Acta. 1966 Oct 24;129(1):166–177. doi: 10.1016/0005-2787(66)90018-9. [DOI] [PubMed] [Google Scholar]
- Butterworth B. E., Korant B. D. Characterization of the large picornaviral polypeptides produced in the presence of zinc ion. J Virol. 1974 Aug;14(2):282–291. doi: 10.1128/jvi.14.2.282-291.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Böhm L., Briand G., Sautière P., Crane-Robinson C. Proteolytic digestion studies of chromatin core-histone structure. Identification of the limit peptides of histones H3 and H4. Eur J Biochem. 1981 Sep;119(1):67–74. doi: 10.1111/j.1432-1033.1981.tb05577.x. [DOI] [PubMed] [Google Scholar]
- Böhm L., Crane-Robinson C., Sautière P. Proteolytic digestion studies of chromatin core-histone structure. Identification of a limit peptide of histone H2A. Eur J Biochem. 1980 May;106(2):525–530. doi: 10.1111/j.1432-1033.1980.tb04599.x. [DOI] [PubMed] [Google Scholar]
- Chong M. T., Garrard W. T., Bonner J. Purification and properties of a neutral protease from rat liver chromatin. Biochemistry. 1974 Dec 3;13(25):5128–5134. doi: 10.1021/bi00722a012. [DOI] [PubMed] [Google Scholar]
- Crawford N., Fire A., Samuels M., Sharp P. A., Baltimore D. Inhibition of transcription factor activity by poliovirus. Cell. 1981 Dec;27(3 Pt 2):555–561. doi: 10.1016/0092-8674(81)90397-4. [DOI] [PubMed] [Google Scholar]
- Devaney M. A., Vakharia V. N., Lloyd R. E., Ehrenfeld E., Grubman M. J. Leader protein of foot-and-mouth disease virus is required for cleavage of the p220 component of the cap-binding protein complex. J Virol. 1988 Nov;62(11):4407–4409. doi: 10.1128/jvi.62.11.4407-4409.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dewalt P. G., Lawson M. A., Colonno R. J., Semler B. L. Chimeric picornavirus polyproteins demonstrate a common 3C proteinase substrate specificity. J Virol. 1989 Aug;63(8):3444–3452. doi: 10.1128/jvi.63.8.3444-3452.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fernández-Tomás C. The presence of viral-induced proteins in nuclei from poliovirus-infected HeLa cells. Virology. 1982 Jan 30;116(2):629–634. doi: 10.1016/0042-6822(82)90154-4. [DOI] [PubMed] [Google Scholar]
- Forss S., Strebel K., Beck E., Schaller H. Nucleotide sequence and genome organization of foot-and-mouth disease virus. Nucleic Acids Res. 1984 Aug 24;12(16):6587–6601. doi: 10.1093/nar/12.16.6587. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Franssen H., Leunissen J., Goldbach R., Lomonossoff G., Zimmern D. Homologous sequences in non-structural proteins from cowpea mosaic virus and picornaviruses. EMBO J. 1984 Apr;3(4):855–861. doi: 10.1002/j.1460-2075.1984.tb01896.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gorbalenya A. E., Blinov V. M., Donchenko A. P. Poliovirus-encoded proteinase 3C: a possible evolutionary link between cellular serine and cysteine proteinase families. FEBS Lett. 1986 Jan 6;194(2):253–257. doi: 10.1016/0014-5793(86)80095-3. [DOI] [PubMed] [Google Scholar]
- Grigera P. R., Sagedahl A. Cytoskeletal association of an aphthovirus-induced polypeptide derived from the P3ABC region of the viral polyprotein. Virology. 1986 Oct 30;154(2):369–380. doi: 10.1016/0042-6822(86)90462-9. [DOI] [PubMed] [Google Scholar]
- Grigera P. R., Tisminetzky S. G. Histone H3 modification in BHK cells infected with foot-and-mouth disease virus. Virology. 1984 Jul 15;136(1):10–19. doi: 10.1016/0042-6822(84)90243-5. [DOI] [PubMed] [Google Scholar]
- Hebbes T. R., Thorne A. W., Crane-Robinson C. A direct link between core histone acetylation and transcriptionally active chromatin. EMBO J. 1988 May;7(5):1395–1402. doi: 10.1002/j.1460-2075.1988.tb02956.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Herman R. C. Alternatives for the initiation of translation. Trends Biochem Sci. 1989 Jun;14(6):219–222. doi: 10.1016/0968-0004(89)90030-3. [DOI] [PubMed] [Google Scholar]
- Hope J., Multhaup G., Reekie L. J., Kimberlin R. H., Beyreuther K. Molecular pathology of scrapie-associated fibril protein (PrP) in mouse brain affected by the ME7 strain of scrapie. Eur J Biochem. 1988 Mar 1;172(2):271–277. doi: 10.1111/j.1432-1033.1988.tb13883.x. [DOI] [PubMed] [Google Scholar]
- Hunkapiller M. W., Lujan E., Ostrander F., Hood L. E. Isolation of microgram quantities of proteins from polyacrylamide gels for amino acid sequence analysis. Methods Enzymol. 1983;91:227–236. doi: 10.1016/s0076-6879(83)91019-4. [DOI] [PubMed] [Google Scholar]
- Ivanoff L. A., Towatari T., Ray J., Korant B. D., Petteway S. R., Jr Expression and site-specific mutagenesis of the poliovirus 3C protease in Escherichia coli. Proc Natl Acad Sci U S A. 1986 Aug;83(15):5392–5396. doi: 10.1073/pnas.83.15.5392. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Johnson E. M., Sterner R., Allfrey V. G. Altered nucleosomes of active nucleolar chromatin contain accessible histone H3 in its hyperacetylated forms. J Biol Chem. 1987 May 25;262(15):6943–6946. [PubMed] [Google Scholar]
- Konigsberg W. H., Henderson L. Removal of sodium dodecyl sulfate from proteins by ion-pair extraction. Methods Enzymol. 1983;91:254–259. doi: 10.1016/s0076-6879(83)91022-4. [DOI] [PubMed] [Google Scholar]
- Kräusslich H. G., Wimmer E. Viral proteinases. Annu Rev Biochem. 1988;57:701–754. doi: 10.1146/annurev.bi.57.070188.003413. [DOI] [PubMed] [Google Scholar]
- Kurecki T., Kowalska-Loth B., Toczko K., Chmielewska I. Evidence that neutral protease from calf thymus chromatin is a serine type enzyme. FEBS Lett. 1975 May 15;53(3):313–315. doi: 10.1016/0014-5793(75)80044-5. [DOI] [PubMed] [Google Scholar]
- Lloyd R. E., Grubman M. J., Ehrenfeld E. Relationship of p220 cleavage during picornavirus infection to 2A proteinase sequencing. J Virol. 1988 Nov;62(11):4216–4223. doi: 10.1128/jvi.62.11.4216-4223.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mayer T., Tamura T., Falk M., Niemann H. Membrane integration and intracellular transport of the coronavirus glycoprotein E1, a class III membrane glycoprotein. J Biol Chem. 1988 Oct 15;263(29):14956–14963. doi: 10.1016/S0021-9258(18)68131-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Melton D. A., Krieg P. A., Rebagliati M. R., Maniatis T., Zinn K., Green M. R. Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter. Nucleic Acids Res. 1984 Sep 25;12(18):7035–7056. doi: 10.1093/nar/12.18.7035. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nelles L. P., Bamburg J. R. Rapid visualization of protein--dodecyl sulfate complexes in polyacrylamide gels. Anal Biochem. 1976 Jun;73(2):522–531. doi: 10.1016/0003-2697(76)90202-5. [DOI] [PubMed] [Google Scholar]
- Nicklin M. J., Harris K. S., Pallai P. V., Wimmer E. Poliovirus proteinase 3C: large-scale expression, purification, and specific cleavage activity on natural and synthetic substrates in vitro. J Virol. 1988 Dec;62(12):4586–4593. doi: 10.1128/jvi.62.12.4586-4593.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Omata T., Kohara M., Kuge S., Komatsu T., Abe S., Semler B. L., Kameda A., Itoh H., Arita M., Wimmer E. Genetic analysis of the attenuation phenotype of poliovirus type 1. J Virol. 1986 May;58(2):348–358. doi: 10.1128/jvi.58.2.348-358.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pallai P. V., Burkhardt F., Skoog M., Schreiner K., Bax P., Cohen K. A., Hansen G., Palladino D. E., Harris K. S., Nicklin M. J. Cleavage of synthetic peptides by purified poliovirus 3C proteinase. J Biol Chem. 1989 Jun 15;264(17):9738–9741. [PubMed] [Google Scholar]
- Parks G. D., Palmenberg A. C. Site-specific mutations at a picornavirus VP3/VP1 cleavage site disrupt in vitro processing and assembly of capsid precursors. J Virol. 1987 Dec;61(12):3680–3687. doi: 10.1128/jvi.61.12.3680-3687.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pelham H. R. Translation of encephalomyocarditis virus RNA in vitro yields an active proteolytic processing enzyme. Eur J Biochem. 1978 Apr 17;85(2):457–462. doi: 10.1111/j.1432-1033.1978.tb12260.x. [DOI] [PubMed] [Google Scholar]
- Piña B., Martínez P., Suau P. Differential acetylation of core histones in rat cerebral cortex neurons during development and aging. Eur J Biochem. 1988 Jun 1;174(2):311–315. doi: 10.1111/j.1432-1033.1988.tb14099.x. [DOI] [PubMed] [Google Scholar]
- Prior C. P., Cantor C. R., Johnson E. M., Littau V. C., Allfrey V. G. Reversible changes in nucleosome structure and histone H3 accessibility in transcriptionally active and inactive states of rDNA chromatin. Cell. 1983 Oct;34(3):1033–1042. doi: 10.1016/0092-8674(83)90561-5. [DOI] [PubMed] [Google Scholar]
- Rangel L. M., Fernandez-Tomas C., Dahmus M. E., Gariglio P. Modification of RNA polymerase IIO subspecies after poliovirus infection. J Virol. 1987 Apr;61(4):1002–1006. doi: 10.1128/jvi.61.4.1002-1006.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reeves R. Transcriptionally active chromatin. Biochim Biophys Acta. 1984 Sep 10;782(4):343–393. doi: 10.1016/0167-4781(84)90044-7. [DOI] [PubMed] [Google Scholar]
- Scheer U., Zentgraf H., Sauer H. W. Different chromatin structures in Physarum polycephalum: a special form of transcriptionally active chromatin devoid of nucleosomal particles. Chromosoma. 1981;84(2):279–290. doi: 10.1007/BF00399138. [DOI] [PubMed] [Google Scholar]
- Sonenberg N. Regulation of translation by poliovirus. Adv Virus Res. 1987;33:175–204. doi: 10.1016/s0065-3527(08)60318-8. [DOI] [PubMed] [Google Scholar]
- Strebel K., Beck E. A second protease of foot-and-mouth disease virus. J Virol. 1986 Jun;58(3):893–899. doi: 10.1128/jvi.58.3.893-899.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Strebel K., Beck E., Strohmaier K., Schaller H. Characterization of foot-and-mouth disease virus gene products with antisera against bacterially synthesized fusion proteins. J Virol. 1986 Mar;57(3):983–991. doi: 10.1128/jvi.57.3.983-991.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Thomas J. O., Kornberg R. D. An octamer of histones in chromatin and free in solution. Proc Natl Acad Sci U S A. 1975 Jul;72(7):2626–2630. doi: 10.1073/pnas.72.7.2626. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Traub U., Traub P. Changes in the microheterogeneity of histone H1 after mengovirus infection of Ehrlich ascites tumor cells. Hoppe Seylers Z Physiol Chem. 1978 May;359(5):581–589. doi: 10.1515/bchm.1978.359.1.581. [DOI] [PubMed] [Google Scholar]
- Trendelenburg M. F., Gurdon J. B. Transcription of cloned Xenopus ribosomal genes visualised after injection into oocyte nuclei. Nature. 1978 Nov 16;276(5685):292–294. doi: 10.1038/276292a0. [DOI] [PubMed] [Google Scholar]
- Vakharia V. N., Devaney M. A., Moore D. M., Dunn J. J., Grubman M. J. Proteolytic processing of foot-and-mouth disease virus polyproteins expressed in a cell-free system from clone-derived transcripts. J Virol. 1987 Oct;61(10):3199–3207. doi: 10.1128/jvi.61.10.3199-3207.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weisbrod S. Active chromatin. Nature. 1982 May 27;297(5864):289–295. doi: 10.1038/297289a0. [DOI] [PubMed] [Google Scholar]
- Werner G., Rosenwirth B., Bauer E., Seifert J. M., Werner F. J., Besemer J. Molecular cloning and sequence determination of the genomic regions encoding protease and genome-linked protein of three picornaviruses. J Virol. 1986 Mar;57(3):1084–1093. doi: 10.1128/jvi.57.3.1084-1093.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zentgraf H., Franke W. W. Differences of supranucleosomal organization in different kinds of chromatin: cell type-specific globular subunits containing different numbers of nucleosomes. J Cell Biol. 1984 Jul;99(1 Pt 1):272–286. doi: 10.1083/jcb.99.1.272. [DOI] [PMC free article] [PubMed] [Google Scholar]