Introduction and Objective
Several large genome-wide association studies using high-throughput SNP gene chips have shown that SNPs rs1447295, rs16901979 and rs6983267, in particular, were associated with increased prostate cancer risk. We examined whether these SNPs could be used in a clinical setting for prostate cancer detection.
Materials and Methods
We genotyped 2789 men who underwent a prostate biopsy for prostate cancer detection, based on an abnormal PSA or DRE for rs1447295, rs16901979 and rs6983267. These subjects were well characterized for cancer status, age, family history of prostate cancer, ethnicity, urinary voiding symptoms, PSA, free:total PSA ratio and DRE, which were incorporated in a predictive model. Multivariate logistic regression and nomogram construction examined the significance of the chromosome 8q24 SNPs. Area under the curves (AUC) were compared using receiver operating characteristic (ROC) analysis.
Results
Of 2789 men, 1299 (46.6%) had prostate cancer at biopsy and 1490 (53.4%) had no cancer. Of the 3 SNPS, rs1447295 showed the strongest association with prostate cancer. The probability for prostate cancer was 44.2%, 53.4% and 65.5% for patients with the CC, CA and AA genotypes, respectively (p = 3×10-8). After adjusting for age, family history of prostate cancer, ethnicity, urinary voiding symptoms, PSA, free:total PSA ratio and DRE, the odds ratio for patients with the GG genotype was 2.0 (95% CI 1.1–3.7). A nomogram was constructed using all predictor variables including genotype status of rs1447295. The AUC for the nomogram in predicting prostate cancer was 0.72 (95% CI 0.70–0.74). In subanalysis, when we stratified by genotype status, for patients with the variant genotype, AA, the AUC for predicting prostate cancer by the predictor variables of age, family history, ethnicity, urinary voiding symptoms, PSA, free:total PSA ratio and DRE was 0.92 (95% CI 0.86–0.99). This was significantly greater than the AUC for patients with the CC or CA gentoypes (AUC 0.71, 95% CI 0.69–0.73, p < 0.0001).
Conclusion
The rs1447295 SNP of chromosome 8q24 is strongly associated with prostate cancer and can be used in nomograms to enhance the clinical detection of prostate cancer. In particular, prostate cancer can be accurately identified by the nomogram for subjects with the variant AA genotype (AUC 0.92).











































