Skip to main content
Journal of Virology logoLink to Journal of Virology
. 1989 Jul;63(7):3195–3199. doi: 10.1128/jvi.63.7.3195-3199.1989

Growth efficiency of naturally occurring BK virus variants in vivo and in vitro.

C Sugimoto 1, K Hara 1, F Taguchi 1, Y Yogo 1
PMCID: PMC250882  PMID: 2542627

Abstract

We molecularly cloned a number of BK virus (BKV) DNAs from urine samples collected from a patient with systemic lupus erythematosus undergoing immunosuppressive therapy. On the basis of the structure of the noncoding regulatory region, cloned viral DNAs were classified into a major group and several minor groups. The major group contained a single 68-base-pair (bp) promoter-enhancer element and a 63-bp sequence identified in the genomes of many BKV strains. Most of the minor groups retained a variety of duplications within the transcriptional control region and the origin of DNA replication. We assayed various cloned viral DNAs for the capacity to induce viral growth in transfected human embryonic kidney cells. While major viral DNAs induced slow viral replication, a minor viral DNA retaining partial duplication of the 68-bp element induced rapid viral growth. We concluded that reiteration of the promoter-enhancer element, which is required for efficient growth of BKV in cell culture, is not advantageous for replication of BKV in natural hosts.

Full text

PDF
3195

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Beckmann A. M., Shah K. V., Mounts P. Genetic heterogeneity of the human papovaviruses BK and JC. J Med Virol. 1985 Mar;15(3):239–250. doi: 10.1002/jmv.1890150305. [DOI] [PubMed] [Google Scholar]
  2. Carbon J., Shenk T. E., Berg P. Biochemical procedure for production of small deletions in simian virus 40 DNA. Proc Natl Acad Sci U S A. 1975 Apr;72(4):1392–1396. doi: 10.1073/pnas.72.4.1392. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Chauhan S., Lecatsas G., Harley E. H. Genome analysis of BK (WW) viral DNA cloned directly from human urine. Intervirology. 1984;22(3):170–176. doi: 10.1159/000149547. [DOI] [PubMed] [Google Scholar]
  4. Deyerle K. L., Cassill J. A., Subramani S. Analysis of the early regulatory region of the human papovavirus BK. Virology. 1987 May;158(1):181–193. doi: 10.1016/0042-6822(87)90252-2. [DOI] [PubMed] [Google Scholar]
  5. Fiers W., Contreras R., Haegemann G., Rogiers R., Van de Voorde A., Van Heuverswyn H., Van Herreweghe J., Volckaert G., Ysebaert M. Complete nucleotide sequence of SV40 DNA. Nature. 1978 May 11;273(5658):113–120. doi: 10.1038/273113a0. [DOI] [PubMed] [Google Scholar]
  6. Gardner S. D., Field A. M., Coleman D. V., Hulme B. New human papovavirus (B.K.) isolated from urine after renal transplantation. Lancet. 1971 Jun 19;1(7712):1253–1257. doi: 10.1016/s0140-6736(71)91776-4. [DOI] [PubMed] [Google Scholar]
  7. Goudsmit J., Baak M. L., Sleterus K. W., Van der Noordaa J. Human papovavirus isolated from urine of a child with acute tonsillitis. Br Med J (Clin Res Ed) 1981 Nov 21;283(6303):1363–1364. doi: 10.1136/bmj.283.6303.1363-a. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Graham F. L., van der Eb A. J. A new technique for the assay of infectivity of human adenovirus 5 DNA. Virology. 1973 Apr;52(2):456–467. doi: 10.1016/0042-6822(73)90341-3. [DOI] [PubMed] [Google Scholar]
  9. Hara K., Oya Y., Kinoshita H., Taguchi F., Yogo Y. Sequence reiteration required for the efficient growth of BK virus. J Gen Virol. 1986 Nov;67(Pt 11):2555–2559. doi: 10.1099/0022-1317-67-11-2555. [DOI] [PubMed] [Google Scholar]
  10. Howley P. M., Khoury G., Byrne J. C., Takemoto K. K., Martin M. A. Physical map of the BK virus genome. J Virol. 1975 Oct;16(4):959–973. doi: 10.1128/jvi.16.4.959-973.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Mew R. T., Lecatsas G., Prozesky O. W., Harley E. H. Characteristics of BK papovavirus DNA prepared directly from human urine. Intervirology. 1981;16(1):14–19. doi: 10.1159/000149242. [DOI] [PubMed] [Google Scholar]
  12. Pagnani M., Negrini M., Reschiglian P., Corallini A., Balboni P. G., Scherneck S., Macino G., Milanesi G., Barbanti-Brodano G. Molecular and biological properties of BK virus-IR, a BK virus variant isolated from a human tumor. J Virol. 1986 Aug;59(2):500–505. doi: 10.1128/jvi.59.2.500-505.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Pater A., Pater M. M., Chang L. S., Slawin K., Di Mayorca G. Multiple origins of the complementary defective genomes of RF and origin proximal sequences of GS, two human papovavirus isolates. Virology. 1983 Dec;131(2):426–436. doi: 10.1016/0042-6822(83)90509-3. [DOI] [PubMed] [Google Scholar]
  14. Reddy V. B., Thimmappaya B., Dhar R., Subramanian K. N., Zain B. S., Pan J., Ghosh P. K., Celma M. L., Weissman S. M. The genome of simian virus 40. Science. 1978 May 5;200(4341):494–502. doi: 10.1126/science.205947. [DOI] [PubMed] [Google Scholar]
  15. Rosenthal N., Kress M., Gruss P., Khoury G. BK viral enhancer element and a human cellular homolog. Science. 1983 Nov 18;222(4625):749–755. doi: 10.1126/science.6314501. [DOI] [PubMed] [Google Scholar]
  16. Rubinstein R., Pare N., Harley E. H. Structure and function of the transcriptional control region of nonpassaged BK virus. J Virol. 1987 May;61(5):1747–1750. doi: 10.1128/jvi.61.5.1747-1750.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Seif I., Khoury G., Dhar R. The genome of human papovavirus BKV. Cell. 1979 Dec;18(4):963–977. doi: 10.1016/0092-8674(79)90209-5. [DOI] [PubMed] [Google Scholar]
  19. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  20. Taguchi F., Hara K., Kajioka J., Nagaki D. BK virus haemagglutinin in urine of a patient with BK virus infection. Acta Virol. 1980 Mar;24(2):154–154. [PubMed] [Google Scholar]
  21. Taguchi F., Hara K., Kajioka J., Nagaki D. Isolation of BK virus from a patient with systemic lupus erythematosus (SLE). Microbiol Immunol. 1979;23(11):1131–1132. doi: 10.1111/j.1348-0421.1979.tb00544.x. [DOI] [PubMed] [Google Scholar]
  22. Watanabe S., Soeda E., Uchida S., Yoshiike K. DNA rearrangement affecting expression of the BK virus transforming gene. J Virol. 1984 Jul;51(1):1–6. doi: 10.1128/jvi.51.1.1-6.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Watanabe S., Yoshiike K. Decreasing the number of 68-base-pair tandem repeats in the BK virus transcriptional control region reduces plaque size and enhances transforming capacity. J Virol. 1985 Sep;55(3):823–825. doi: 10.1128/jvi.55.3.823-825.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Watanabe S., Yoshiike K. Evolutionary changes of transcriptional control region in a minute-plaque viable deletion mutant of BK virus. J Virol. 1986 Aug;59(2):260–266. doi: 10.1128/jvi.59.2.260-266.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Watanabe S., Yoshiike K., Nozawa A., Yuasa Y., Uchida S. Viable deletion mutant of human papovavirus BK that induces insulinomas in hamsters. J Virol. 1979 Dec;32(3):934–942. doi: 10.1128/jvi.32.3.934-942.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Yang R. C., Wu R. BK virus DNA: complete nucleotide sequence of a human tumor virus. Science. 1979 Oct 26;206(4417):456–462. doi: 10.1126/science.228391. [DOI] [PubMed] [Google Scholar]
  27. Yogo Y., Furuno A., Nozawa A., Uchida S. Organization of viral genome in a T antigen-negative hamster tumor induced by human papovavirus BK. J Virol. 1981 May;38(2):556–563. doi: 10.1128/jvi.38.2.556-563.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. ter Schegget J., Sol C. J., Baan E. W., van der Noordaa J., van Ormondt H. Naturally occurring BK virus variants (JL and Dik) with deletions in the putative early enhancer-promoter sequences. J Virol. 1985 Jan;53(1):302–305. doi: 10.1128/jvi.53.1.302-305.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Journal of Virology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES