Abstract
The molecular and functional characterization of a 125-kDa Ca2+-extractable protein of the Triton X-100–insoluble fraction of Dictyostelium cells identified a new type of a gelsolin-related molecule. In addition to its five gelsolin segments, this gelsolin-related protein of 125 kDa (GRP125) reveals a number of unique domains, two of which are predicted to form coiled-coil regions. Another distinct attribute of GRP125 concerns the lack of sequence elements known to be essential for characteristic activities of gelsolin-like proteins, i.e. the severing, capping, or nucleation of actin filaments. The subcellular distribution of GRP125 to vesicular compartments suggests an activity of GRP125 different from actin-binding, gelsolin-related proteins. GRP125 expression is tightly regulated and peaks at the transition to the multicellular pseudoplasmodial stage of Dictyostelium development. GRP125 was found indispensable for slug phototaxis, because slugs fail to correctly readjust their orientation in the absence of GRP125. Analysis of the GRP125-deficient mutant showed that GRP125 is required for coupling photodetection to the locomotory machinery of slugs. We propose that GRP125 is essential in the natural environment for the propagation of Dictyostelium spores. We also present evidence for further representatives of the GRP125 type in Dictyostelium, as well as in heterologous cells from lower to higher eukaryotes.
INTRODUCTION
A number of basic cellular functions require a rapid, localized reorganization of the actin cytoskeleton, and Ca2+-sensitive microfilament proteins often hold a key position in the regulation of these processes (Brundage et al., 1993). Triton X-100 treatment of cells solubilizes a substantial proportion of intracellular proteins, whereas the insoluble fraction is enriched in cytoskeletal proteins (Prassler et al., 1998). The Ca2+ extract of the Triton X-100–insoluble cellular material harbors a valuable source of structural and regulatory proteins of the actin cytoskeleton (Jungbluth et al., 1995; Prassler et al., 1997, 1998). This Ca2+ extract was further screened as part of our continuing efforts to identify and characterize proteins involved in the regulation of the organization and dynamics of the actin cytoskeleton. In this study we describe a previously uncharacterized 125-kDa protein identified in the Ca2+ extract that has several hallmarks of the gelsolin family of actin-binding proteins. We therefore refer to this protein as gelsolin-related protein of 125 kDa (GRP125).
Gelsolin-related proteins are characterized by repeats of 125–150 amino acid segments constituting clusters of conserved sequence motifs that define a characteristic three-dimensional domain structure (Way and Weeds, 1988, McLaughlin et al., 1993) (compare Figure 1A). These segments in gelsolin-related proteins are organized in triplicate, reflecting a gene multiplication of a prototypical “gelsolin domain” (Kwiatkowski et al., 1986, Bazari et al., 1988). Members of the gelsolin family typically exist as either three-domain proteins, such as severin from Dictyostelium discoideum (Yamamoto et al., 1982), fragmin from Physarum (Hasegawa et al., 1980), and capG (in macrophages and fibroblasts [Southwick and DiNubile, 1986]), or six-domain proteins, such as adseverin (in adrenal glands [Maekawa et al., 1989]) and gelsolin (Yin and Stossel, 1979). Gelsolin is expressed in most mammalian cell lines (Kwiatkowski et al., 1988a,b), and gelsolin homologues have been identified in Drosophila (Heintzelmann et al., 1993), Xenopus (Ankenbauer et al., 1989), earthworm (D’Haese and Hinssen, 1987), and different crustaceae (Lück et al., 1995).
Interestingly, some gelsolin relatives integrate the typical activities of gelsolin-family members—capping, severing, and nucleation of actin filaments—with other interactions or activities mediated by additional domains. The well-characterized villin protein (Bretscher and Weber, 1980) exhibits a C-terminal headpiece, which harbors an additional F-actin–binding site that is used to form tightly packed actin bundles (Glenney and Weber, 1981). On the other hand, a myc basic homology region in CapG (Prendergast and Ziff, 1991), as well as an N-terminal extension of the recently described supervillin (Pestonjamasp et al., 1997), might be involved in the nuclear localization of these proteins. Finally, the flightless I gene product of Drosophila contains a leucine-rich repeat at its N terminus, a domain known to mediate protein–protein interactions (Campbell et al., 1993).
A sequence-based characterization of GRP125 conducted in this study reveals unique N-and C-terminal domains in addition to its gelsolin core. Mutant cells lacking GRP125 exhibit a defect in their phototactic response in that photodetection is uncoupled from the locomotory machinery. The identification of GRP125 as a new type of gelsolin-related protein extends the structural and functional characteristics of the gelsolin protein family.
MATERIALS AND METHODS
Cell Culture and Development of Dictyostelium Cells
The D. discoideum strain AX2 and GRP125-null mutants were cultivated at 23°C in shaken suspension (150 rpm; Claviez et al., 1982) using axenic nutrient medium or else were grown in medium on Petri dishes. To analyze development to aggregation competence, cells were washed and resuspended in 17 mM K-Na phosphate buffer (pH 6.0) at 107 cells/ml and shaken at 150 rpm for 9 h. In addition, analysis of developmental regulation was accomplished by developing 5 × 107 cells on nitrocellulose filters (Newell et al., 1969). Cells at different developmental stages were scraped off filters using a razor blade and lysed in Tris-HCl (pH 7.5), 0.1% SDS, 1 mM DTT, 1 mM Pefabloc (Boehringer Mannheim, Mannheim, Germany), and 1% protease inhibitor mixture (antipain, bestatin A, leupeptin, pepstatin, 10 μg/ml each) for preparation of total protein (Furukawa et al., 1992). Growth and development were also examined using cells grown on nutrient agar plates on a lawn of Escherichia coli B/2 (Noegel et al., 1985). NIH/3T3 fibroblasts were grown on HCl-treated, poly-l-lysine–coated glass coverslips in DMEM supplemented with 10% FCS and 1% penicillin/streptomycin and processed for microinjection as described by Celis (1994) (cell culture material purchased from Life Technologies, Gaithersburg, MD).
Phototaxis experiments were performed essentially as described by Wallraff (1997). Up to 1 × 107 AX2 or mutant cells were applied onto the surface of a water agar plate 9 cm in diameter. The application point was asymmetrically located to one side of the plate, and its distance to the light port was 7.5 cm. Control experiments conducted in the absence of light used cells applied to the center of the plate. After incubation for 3 d at 23°C in a phototaxis chamber, trails and cellular material were blotted to noncoated transparencies and stained with Coomassie Blue. For analysis of the phototactic response of Dictyostelium fruiting bodies, nutrient agar plates containing a lawn of E. coli B/2 cells were point inoculated with the D. discoideum strain AX2 or the GRP125-null mutants, incubated for 4 d in the phototaxis chamber, and photographed from above.
Cloning, Sequencing, and Analysis of the GRP125 Coding Region
A λgt11 cDNA expression library prepared from D. discoideum AX3 cells starved for 4 h (Clontech Laboratories, Palo Alto, CA) was screened with the 125I-labeled monoclonal antibody (mAb) 212-174-1 (see below). This screen identified a 2.5-kb clone, λ-1A, which corresponds to a fragment of the GRP125 coding sequence from bp 205 to 2727 (A of ATG = 1). A genomic map was constructed using 32P-labeled parts of the 2.5-kb phage clone at its 5′ (probe F3, bp 205–625 of the GRP125 coding region) and 3′ ends (probe F1, bp 1228–2727). A 2.7-kb EcoRI fragment at the 5′ end and a 2.8-kb EcoRI fragment at the 3′ end of λ-1A were found appropriate for inverted PCR amplification and thus to compile the complete sequence of GRP125. Eight micrograms of genomic D. discoideum AX2 DNA were digested with EcoRI and religated in an ample volume. A 100-μl reaction mixture for inverted PCR contained 0.2 μg of this template and 0.1-nM primers (3′-GCG AAG CTT GCA TCA CTT TGC ATA ATG AAA ACA TCC and 5′-GCG GGA TCC GAA TGA TAT ATT CCA AGT TGA CG for amplification of the 5′ fragment and 3′-GCG AAG CTT CGA CGG GAT CAT CTG ATT TC and 5′-GCG GGA TCC GGT CAA TGA CGA AGC CAC CG for amplification of the 3′ fragment). Temperature cycles started with 3 min at 96°C, followed by 30 cycles of 94°C for 1 min, 58°C for 1 min, 72°C for 3 min, and finally 5 min at 72°C. Primers were designed to obtain a BamHI site at the 5′ end and a HindIII site at the 3′ end of the amplified product, which was cloned into pIC20R (Marsh et al., 1984). Three independent clones were sequenced for the amplification product at the 3′ end (bp 2482–3992 of the GRP125 coding region). The sequence of the amplified product at the 5′ end (−1733–293) was verified by sequencing a clone identified with the 5′ probe (probe F3, bp 205–625 of the GRP125 coding region) in a screen of a genomic D. discoideum AX3 plasmid library (courtesy of R.A. Firtel, University of California, San Diego, La Jolla, CA). This clone, G5, includes ∼6.5 kb upstream of the grp125 gene until bp 2051 of the GRP125 coding sequence. Sequencing of DNA double strands was generally performed in both directions with uni, reverse, and sequence-specific primers applying the chain termination method (Sanger et al., 1977), or the dye termination method on an ABI fluorescent sequencer (Applied Biosystems, Perkin Elmer-Cetus, Norwalk, CT). Programs bestfit, coilscan, fasta, gap, motifs, peptidesort, and pileup of the Wisconsin Package Version 9.1 (Genetics Computer Group, Madison, WI) and blastp 2.0.3 (Altschul et al., 1997) were used to analyze the GRP125 sequence. Coiled-coil predictions were compared applying a window size of 21 and MTK and MTIK matrices with and without weighting options (MTK, matrix derived from the sequences of myosins, tropomyosins and keratins [intermediate filaments type I and II]; Lupas et al., 1991; MTIDK, matrix derived from myosins, paramyosins, tropomysins, intermediate filaments type I–V, desmosomal proteins, and kinesins; Lupas, 1996).
Expression of GRP125 Polypeptide Fragments
A cDNA fragment coding for residues Asp-60 to Leu-308 of GRP125 (corresponding to S2 and S3 of GRP125) was obtained by PCR using primers designed to introduce a BamHI site at the 5′ end and a HindIII site at the 3′ end. The amplified product was cloned into the expression vector pQE30 (Qiagen, Chatsworth, CA) and, after sequence verification, expressed in E. coli M15. The His-tagged GRP125 fragment, designated GRP125/S2S3, was purified after isopropyl-1-thio-β-d-galactopyranoside induction for 1 h from the soluble fraction of bacterial extracts on nickel-nitrilotriacetic acidagarose as recommended by the manufacturer (Qiagen). For microinjection of GRP125/S2S3 into NIH/3T3 fibroblasts, the polypeptide was fluorescently labeled in 20 mM phosphate buffer (pH 7.8) using tetramethylrhodamine iodoacetamide (Molecular Probes, Eugene, OR) as described by Marriott (1994). Additionally, an EcoRI cDNA fragment coding for residues Glu-181 to Ser-380 of GRP125 (corresponding to S3 and most of S4 of GRP125) was cloned into the pIMS5 expression vector (Simon et al., 1988) and expressed in E. coli JM105. Lysis of bacteria was achieved in 10 mM Tris-HCl (pH 8.0), 100 mM NaCl, 1 mM DTT, 5 mM EDTA, 0.5 mM Pefabloc, and 1% protease inhibitors (see above) using a French press (Aminco; Spectronic Instruments, Rochester, NY) at 16,000 psi. The lysate was centrifuged at 13,000 × g, and the recombinant polypeptide, GRP125/S3S4, was isolated from the pelleted inclusion bodies in sufficient purity after several wash steps. Thus, the first wash was accomplished by adding to the above-mentioned buffer 1 mM EGTA, 25% sucrose, and 1% Triton X-100. Subsequent wash steps applied increasing amounts of urea (0, 2, and 4 M) in 10 mM Tris-HCl (pH 8.0), 100 mM NaCl, 1 mM DTT, 1 mM EGTA, 0.5 mM Pefabloc, and 1% protease inhibitors. Solubilization of GRP125/S3S4 occurred at the 6 M urea extraction step; refolding of GRP125/S3S4 was achieved by gradually removing the urea by dialysis.
Gene Replacement in D. discoideum
For the construction of the targeting vector a genomic DNA fragment comprising bp −81–1739 of the GRP125 coding region was obtained by PCR using primers 5′-GTG TGT ATC ATT AAA ATT G and 3′-CAA TAT CAT TAG AAT TAC C. The amplified product was cloned into the pGEMT vector (Promega, Madison, WI). Because of the absence of EcoRI sites in its multiple cloning sites, a central genomic 5′-EcoRI–3′-EcoRI fragment was readily deleted via restriction with EcoRI and isolation of the vector-containing moiety. This latter fragment was blunt end ligated to the 1.4-kb Bsr cassette, which had been excised from plasmid pBsr2 (Sutoh, 1993) using XbaI and HindIII. The construct was isolated with NotI–NcoI, dephosphorylated, and used to transfect D. discoideum AX2 cells by electroporation (Celis, 1994). Transformants were selected with 7.5 μg/ml blasticidin S (Calbiochem-Novabiochem, San Diego, CA) in nutrient medium, and independent clones of the GRP125-null mutants were isolated (Wallraff and Gerisch, 1991).
Antibody Production
mAb 212-174-1 was obtained from a BALB/c mouse immunized intraperitoneally with a Ca2+ extract preparation and Freund’s adjuvant (Celis, 1994). This Ca2+ extract was isolated from Triton X-100–insoluble cell fractions of Dictyostelium as described by Prassler et al. (1997). Spleen cells were fused with PAIB3ag8I-myeloma cells. Antibody 212-174-1 was identified in hybridoma culture supernatant by immunofluorescent labeling as well as comparative immunoblot analysis of the Ca2+ extract and of homogenates from D. discoideum cells. Polyclonal antibodies directed against S2 and S3 of GRP125 were raised in a rabbit by subcutaneous immunization with the recombinant His-tagged GRP125/S2S3 fragment applying a standard immunization protocol that used Freund’s adjuvant. The serum was affinity purified on GRP125/S2S3 covalently linked to a 6-aminohexanoic acid N-hydroxysuccinimide ester-Sepharose column (Pharmacia, Uppsala, Sweden). Bound antibodies were eluted with 100 mM glycine (pH 2.4) and dialyzed against PBS. Similarly, polyclonal antibodies directed against S3 and S4 of GRP125 were raised by injecting a rabbit with the GRP125/S3S4 fragment using Hunter’s TiterMax (Sigma, Deisenhofen, Germany) as adjuvant. The serum was affinity purified as described above on GRP125/S3S4 coupled to a 6-aminohexanoic acid N-hydroxysuccinimide ester-Sepharose column.
Immunofluorescence
For immunofluorescence labeling, growth phase or aggregation-competent Dictyostelium cells were allowed to adhere to glass coverslips 40 min before fixation. Cells were either fixed for 10 min with cold methanol at −20°C or fixation was accomplished with picric acid/formaldehyde and a postfixation step in 70% ethanol (Humbel and Biegelmann, 1992). Binding of anti-GRP125 polyclonal antibodies was detected with Cy3-conjugated goat anti-rabbit immunoglobulin G (IgG; Jackson ImmunoResearch Laboratories, West Grove, PA). Imaging of cells was achieved using an Axiovert 135 fluorescence microscope equipped with a Plan Neofluar 100× oil objective (Zeiss, Oberkochen, Germany) and a cooled charge-coupled device camera (NU200; Photometrics, Tucson, AZ).
Miscellaneous
For Southern blots, genomic DNA of D. discoideum was prepared as described by Noegel et al. (1985) and, after restriction, transferred to nylon membranes (Biodyne B; Pall Biodyne, East Hills, NY). Fragments of the cDNA clone λ-1A comprising bp 205–640 (F3), 635-1234 (F2), or 1228–2727 (F1) of the GRP125 coding region or the Bsr encoding sequence were nick translated and used as probes for hybridization experiments in the presence of 30% formamide. Subsequent wash steps used low-stringency (30% formamide), medium-stringency (40% formamide), and high-stringency (50% formamide) conditions. SDS-PAGE was performed on 3–20% gradient gels or 10% minigels using the buffer system described by Laemmli (1970). For Western blotting, proteins were transferred to nitrocellulose (Towbin et al., 1979). Mouse anti-cap34 (Hartmann et al., 1989), mouse anti-actin (Simpson et al., 1984), or mouse anti-csA (Bertholdt et al., 1985) were detected using iodinated sheep anti-mouse IgG (Amersham Buchler, Braunschweig, Germany). Detection of polyclonal rabbit anti-GRP125 antibodies was achieved with iodinated goat anti-rabbit IgG prepared by the chloramine-T method (Sambrook et al., 1989). Labeling intensity was quantified with a Fuji BAS 1000 bioimaging analyzer (Phosphoimager; Fuji Photo Film, Tokyo, Japan). Cell and tissue homogenates of diverse origin for the “Zoo-Blot” were provided by B. Muehlbauer and G. Gerisch (Max-Planck-Institute for Biochemistry). The concentration of proteins was determined according to Bradford (1976) referring to bovine IgG as standard.
RESULTS
Identification of a 125-kDa Protein in the Ca2+ Extract of the Triton X-100–insoluble Cellular Fraction
In an effort to identify and analyze regulatory microfilament components present in the Ca2+-extract of the Triton X-100-insoluble cellular material of D. discoideum, mAbs were generated against this fraction and used to screen a λgt11 expression library of D. discoideum cDNA. mAb 212-174-1 identified a cDNA fragment of 2.5 kb truncated at its 5′ and 3′ ends. Application of inverted PCR techniques and further analysis of a genomic library using the initial phage clone as a probe yielded the sequence of a complete open reading frame. The coding sequence from the ATG start to the TAA stop codon comprises 3358 bp. There are two exons (409 and 2852 nucleotides), separated by a short intron of 94 bp, that encode a polypeptide 1087 amino acids in length (Figure 2A). The protein product of this gene has a predicted relative molecular mass of 124,777 and a calculated pI of 4.55, which evidently reflects the high content of glutamate residues (Figure 2A).
Sequence Analysis Identified GRP125 as a Member of the Gelsolin Family of Actin-binding Proteins
Analysis of the deduced amino acid sequence of the 125-kDa polypeptide revealed a significant similarity to members of the gelsolin family of actin-binding proteins. It displayed an overall identity to human plasma gelsolin of 27% with a 48% similarity (Kwiatkowski et al., 1988a). We therefore designate this polypeptide GRP125, gelsolin-related protein of 125 kDa. Consistent with this categorization, GRP125 revealed a segmental organization typical of members of the gelsolin family (Figure 1, A and B). The highly conserved amino acids important for segment tertiary structure (termed motif B, A, C; Way and Weeds, 1988) are found largely unchanged in GRP125 (Figure 2B). The repeat pattern of these characteristic motifs strongly suggests that GRP125 belongs to the family of gelsolin-like proteins.
When the sequence of GRP125 (Figure 2A) is compared with gelsolin, villin, and flightless I proteins or the recently described supervillin (Kwiatkowski et al., 1988a; Arpin et al., 1988; Campbell et al., 1993; Pestonjamasp et al., 1997) (Figure 2B), the highest similarity is found for gelsolin. This observation is valid in comparisons made at the level of individual segments as well as the entire protein. On the other hand, from a sequence-based phylogenetic analysis it is clear that GRP125 is not a close relative of gelsolin. For example, human gelsolin/S2S3 and GRP125/S2S3 share an identity of 28%, which is significantly lower than the identity of 50% between the S2S3 regions of human gelsolin and villin (Kwiatkowski et al., 1988a; Arpin et al., 1988). However, this degree of sequence identity is in line with the identities of 24–31% calculated by comparing the S2S3 regions of gelsolin and villin with those of other more distantly related gelsolin family members, such as flightless I, protovillin, and supervillin.
Despite the apparent similarity of GRP125 to members of the gelsolin family, several relevant criteria distinguish it from other gelsolin-related proteins (Figure 1B). First, GRP125 only contains five gelsolin-like segments (Figures 1B, pointer a, and 2, A and B). This feature is unique among gelsolin-related proteins, which are usually built up of either three or six gelsolin domains. Several lines of evidence show that S1 is missing in GRP125, and that its first N-terminal segment corresponds to S2 in gelsolin proteins. For example, Van Troys et al. (1996) reported characteristic differences in the long helix of S1-type segments compared with the S2-type counterparts, which are responsible for the differential binding of G- or F-actin. The positively charged character of arginine or lysine residues at S2 positions, equivalent to gelsolin residues 211, 213, and 222, is absolutely conserved throughout S2 segments, whereas the corresponding helix positions in the S1 type are acidic or uncharged. In the first N-terminal segment of GRP125, lysine residues occur at those critical positions (GRP125 residues 113, 115, and 126) suggesting that this segment corresponds to an S2 domain. A comparison of sequences of single GRP125 segments with segments of gelsolin and its relatives clearly defines the organization of GRP125 segments as corresponding to the consecutive segments 2–6 of gelsolin (Figures 1B and 2, A and B).
Second, GRP125 lacks the conserved consensus sequences found at the interface between S1 and S2 in gelsolin related proteins (Figures 1B, pointer b, and 2C). Neither the region implicated in the severing activity of gelsolin-related proteins, nor the first phosphatidylinositol bisphosphate (PIP2)-binding motif is present in GRP125. Critical amino acid residues of gelsolin involved in binding F-actin and the second phospholipid-binding site (Figure 2C, gelsolin residues 161–172) (Kwiatkowski et al., 1989; Sun et al., 1994) are only moderately conserved in GRP125. Third, the N terminus of GRP125 harbors a unique 6-kDa N-terminal repetitive sequence of unknown function (Figure 1B, pointer a). Fourth, a prominent and unique feature of GRP125 is the presence of two highly repetitive, glutamate-rich stretches. The first stretch comprises of an almost homogeneous run of 25 glutamates and is located between segments 5 and 6 (Figure 1B, pointer c). The second glutamic acidic-rich region located after segment 6 contains 21 repeats of the motif EEV[I,T]K (Figure 1B, pointer d). Half of these repeats contain a third glutamate and form the variant EEEVK. Hypermixed charge runs (Karlin, 1995) involving glutamate and lysine residues occur in a range of proteins such as MAP1B (human MAP1B; Lien et al., 1994), the neurofilament triplet proteins (e.g., human NFM; Myers et al., 1987), or caldesmon (human caldesmon; Novy et al., 1991). However, the almost invariant EEVK repeat includes a single noncharged (valine) residue in its middle, rendering this repeat a characteristic motif that is unique to GRP125. Sequence-based structure predictions (Lupas et al., 1991; Lupas, 1996) suggest the glutamate-rich stretches together with their flanking regions have a very high probability of forming α-helical coiled-coil structures. Thus, selecting for apolar residues at positions a and d (weight × 2.5) the residues between 554–581 and 710–748 are calculated by MTIDK and MTK matrices to have a probability of >95% of forming a coiled coil (Figure 2A; matrices are derived from myosins, paramyosins, tropomyosins, intermediate filaments type I–V, desmosomal proteins, and kinesins [MTIDK], or from myosins, tropomyosins, and keratins [MTK]). Without using the weighting of apolar positions, the entire second glutamate-rich region of GRP125 is predicted to form a coiled-coil structure (Figure 2A). Fifth, a notable and unique attribute of GRP125 is a repetitive sequence module located at its very C terminus (Figure 1B, pointer e). This extension is ∼20 kDa in size and does not reveal motifs or sequence patterns related to any annotated sequence structures.
GRP125 Localizes to Vesicular Compartments
Dot blots using recombinant polypeptide fragments (Gly-69–Phe-182, Glu-181–Ser-380, and Asn-379–Ile-878) show a strong and specific interaction of mAb 212-174-1 to a region between amino acids Gly-69 and Phe-182 of GRP125 (our unpublished results). However, this antibody proved to react poorly with the same polypeptide after SDS-PAGE and immunoblotting. To obtain antibodies suitable for both immunoblot and immunofluorescence analysis, polyclonal antibodies were raised against bacterially expressed fragments of GRP125 from Dictyostelium. The different GRP125 fragments used in immunizations used either segments 2 and 3 (GRP125/S2S3) or segment 3 and most of segment 4 (GRP125/S3S4). The affinity-purified polyclonal rabbit anti-GRP125/S2S3 antibodies were shown to bind monospecifically to GRP125 (see below) and could be used to determine the subcellular distribution of GRP125 in vegetative and aggregating Dictyostelium cells.
Immunofluorescence labeling of growth phase cells revealed a pattern of numerous fluorescent punctae, which are dispersed throughout the cytoplasm (Figure 3, A and B). These punctae are heterogeneous in terms of their fluorescence intensity (Figure 3, A and B). The extensive intracellular distribution of the punctate GRP125 label, confirmed by confocal microscopy (our unpublished results), resembles the staining pattern of vesicular compartments in Dictyostelium; for example, it is related to the pattern of dispersed Golgi vesicles during cell division (Schneider et al., 1998). These data suggest that GRP125 localizes to intracellular vesicles. Confocal microscopy showed that the fluorescent label was confined to those vesicular structures and not free in the cytoplasm (our unpublished results). GRP125 appeared to localize at the cytoplasmic outside of vesicles, which is supported by the observation that GRP125 is found predominantly in the soluble, cytoplasmic fraction. More than 70% of the cellular GRP125 pool sorts to the soluble fraction upon detergent-independent cell rupture in the absence of Ca2+ (our unpublished results).
Between 3 and 6 h after starvation, Dictyostelium cells rearrange their microfilament cytoskeleton and adopt a polarized morphology with a distinct leading front and trailing edge, and this state is associated with rapid chemotactic motility. Figure 3, C and D, shows that the localization of GRP125 in aggregation- competent D. discoideum cells is very similar to that observed in growth phase cells. Unlike other gelsolin-related proteins that perform a structural function, GRP125 does not accumulate at the cell cortex or at lamellipodia of motile cells (Brock and Pardee, 1988; Hofmann, 1994).
Homologues of GRP125 Are Expressed in D. discoideum
In an effort to screen for other gelsolin-related proteins in Dictyostelium, Southern blot analysis was performed using the genomic region encoding segments 3 and 4 of GRP125 as a probe (probe F2). The single bands observed under conditions of high stringency suggest the presence of a single GRP125 gene in the Dictyostelium genome (Figure 4). However, under these lower-stringency conditions, three different, clearly visible bands were found (Figure 4, left). These cross-hybridizing fragments did not correspond to restriction products of the well-characterized gelsolin-related genes in Dictyostelium, severin, and protovillin because of the different fragment sizes observed in Southern blot analysis (our unpublished results). For example, the EcoRI digest produced cross-hybridizing fragments of 2.6, 2.9, and ∼20 kb, which differed from the 3.8-kb fragment obtained from the severin gene (Andréet al., 1988) and the 6.6- and 11-kb fragments from the protovillin gene (Hofmann et al., 1993). One of these three genes appeared to be very similar to the GRP125 gene, because its cross-hybridization to the probe persisted even under conditions corresponding to medium stringency (Figure 4).
Immunoblots of total protein extracts of D. discoideum were probed using the polyclonal anti-GRP125/S3S4 antibody. Whereas the polyclonal anti-GRP125/S2S3 antibody specifically recognized GRP125, the polyclonal anti-GRP125/S3S4 antibody strongly bound to a second protein of slightly higher electrophoretic mobility (Figure 5A). The second protein band labeled by the anti-GRP125/S3S4 antibody does not correspond to a proteolytic breakdown product of GRP125, as revealed by a distinct regulation and the unaltered expression of this protein in the GRP125-null background (see below). The apparent molecular masses measured by SDS-PAGE analysis were 142 kDa for GRP125 and 134 kDa for the second, related protein. The following data also suggest that GRP125 and the 134 kDa protein are homologous proteins: 1) the strength and specificity of the reaction of the affinity-purified anti-GRP125/S3S4 antibody against the 134 kDa protein; 2) their similar apparent molecular mass; and 3) their similar pI of ∼4.6 (our unpublished results), which indicates a matching amino acid distribution. The close similarity between GRP125 and the 134-kDa protein supports our claim that the 134-kDa polypeptide is produced by the gene that was found to be highly similar to the GRP125 encoding gene in Southern blot analysis (see above; Figure 4; medium stringency). The difference between the values calculated (124.8 kDa) and measured (142 kDa) for GRP125 probably reflects a retarded mobility of GRP125 caused by local hypercharges in its glutamate-rich stretches. For example, lobster gelsolin has a high acidic content and migrates with an apparent molecular mass 22 kDa larger than calculated (105 vs. 83 kDa; Lück et al., 1995).
The distribution of GRP125 and its homologue was compared by immunofluorescence analysis using a variety of fixation protocols (Figure 3). From a series of immunofluorescence experiments an identical vesicle-like staining was observed for the anti-GRP125/S3S4 antibody (Figure 3, E–H), which recognized both homologous proteins and the GRP125-specific anti-GRP125/S2S3 antibody (Figure 3, A–D). These data suggest that both molecules localize to the same structures. Control experiments using only the secondary antibody showed no staining above background level (Figure 3, I and K).
Expression of GRP125 Is Developmentally Regulated
The expression of GRP125 during the developmental cycle of D. discoideum was examined using filter-developed cells (Figure 6, A–C). GRP125 is present in vegetative cells in minor quantities. The transition from growth phase (t0) to early aggregation phase (t9) led to an increase in the level of GRP125 by almost one order of magnitude (Figure 6C). The maximal GRP125 protein level in aggregation phase cells (t9) is approximately maintained until the slug stage (t15). Thereafter the GRP125 level rapidly decreased to barely detectable amounts during culmination and fruiting body formation. Evidently, expression of GRP125 is tightly regulated during development. Because GRP125 mRNA levels likewise increase by an order of magnitude at the onset of starvation (our unpublished results), the expression of GRP125 appears to be transcriptionally regulated. The expression profile of the GRP125 homologue differed markedly from that of GRP125, because the homologue was maximally expressed in vegetative cells. The GRP125 homologue protein level gradually declined during development to an amount in fruiting bodies (t24) that equaled 50% of the protein in growth phase cells (Figure 6C).
Partitioning of GRP125 in Triton X-100–soluble and –insoluble Cellular Fractions
The distribution of GRP125 and its homologue in Triton X-100–soluble and –insoluble cellular fractions was analyzed by Western blotting using the anti-GRP125/S3S4 antibody, which recognizes both GRP125 and the GRP125 homologue (Figure 5B). The majority of GRP125 was present in the Triton X-100–soluble fraction at all stages of development, a feature that GRP125 shares with its homologue and other proteins such as DdPlastin, α-actinin, DdLIM, GFP-DdLIM, and tyrosine-phosphorylated actin (Jungbluth, 1996; Marriott and Stocker, unpublished results). However, a minor amount of GRP125 was found in the Triton X-100–insoluble cellular material and was extracted quantitatively on addition of Ca2+ to the Triton X-100–insoluble material. In contrast, the small amount of the GRP125 homologue in the insoluble fraction was not eluted by Ca2+ (Figure 5B). Our data show that the majority of GRP125 is removed from the cells by detergent treatment. The association of the remaining population of GRP125 with the Triton X-100–insoluble fraction is probably regulated by Ca2+, either through direct binding of Ca2+ by GRP125 or through an interaction with a Ca2+-regulated protein.
Inactivation of the GRP125 Gene
To understand the in vivo function of GRP125 and its role in development, we prepared mutant cell lines lacking GRP125. The construct used for transfection of D. discoideum AX2 replaced the genomic region coding for residues Glu-181 to Ser-380 of GRP125 with the blasticidin S resistance cassette (Bsr cassette; Sutoh, 1993; Figure 7A). This approach was designed to irreversibly inactivate the GRP125-gene via homologous recombination. After transformation, blasticidin S–resistant clones were tested for the absence of GRP125 in immunoblot analysis using the anti-GRP125/S3S4 antibody. Three independent GRP125-deficient mutants, GRP125−/17, GRP125−/18, and GRP125−/C, failed to express GRP125 (Figure 7B) and were chosen for further characterization. Using an EcoRI–BglII digest, Southern blots of AX2 and mutants were analyzed with the F1 probe that hybridized to a 2.8-kb fragment of AX2 DNA (Figure 7C). At the DNA level the labeled fragment of GRP125 mutants showed a shift up to 3.8 kb (Figure 7C). This increase reflected the loss of the second EcoRI site in the replacement construct, which added to the genomic 3′ EcoRI fragment a 1-kb part of the Bsr cassette. A hybridization experiment using the Bsr coding region as a probe labeled the same bands as the GRP125-specific probe and proved the integration of the construct into the GRP125 gene. Solitary bands in Southern blot analysis demonstrated single insertions of the construct into the GRP125 gene for mutants GRP125−/18 and GRP125−/C. An additional band in the restricted GRP125−/17 DNA indicated another, random insertion of the construct into the Dictyostelium genome; however, all three mutants were indistinguishable in respect to their phenotypical characteristics.
Growth of GRP125− Cells and Progression through the Developmental Cycle
Growth of Dictyostelium mutants on lawns of bacteria or axenically in shaken suspension is a complex process that requires a number of cellular functions such as cell division, phagocytosis, adhesion, locomotion, pinocytosis, and tolerance against shearing stress. To assess growth characteristics of GRP125− cells, AX2 and mutant cells were inoculated on a lawn of E. coli B/2, and the increase in colony diameter was taken as a relative measure of the growth rate (Figure 8A). GRP125−-colonies had growth rates that correlated with those measured for AX2 cells. Furthermore, axenically grown GRP125− cells were indistinguishable from AX2 cells with respect to generation times and maximal cell densities (Figure 8B). These data suggest that the cellular functions described above appear intact in vegetative GRP125-deficient cells. GRP125− cells are able to complete the developmental cycle and passed through all stages of development without macroscopically evident disorders (compare developmental stages of GRP125− and AX2 cells depicted in Figure 9C). Mutant cells develop a regular feeding fringe; they are able to form aggregates, slugs, and morphologically normal fruiting bodies with functional spores. The timing of progression through development is not altered by GRP125 deficiency.
The Pseudoplasmodium Stage of GRP125− Mutants Exhibits a Defect in Phototactic Orientation
The expression profile of GRP125 during development suggests it exerts its function late during aggregation or in the slug (compare Figure 6). In the natural habitat of D. discoideum, an important survival task for the slug is to migrate to the soil surface to ensure its progeny will be dispersed to more favorable environments. The orientation of slugs toward a light source is a critical prerequisite for this function (reviewed in Fisher, 1997). The ability of slugs of the GRP125-deficient mutant to perform a phototactic response was analyzed in a phototaxis assay (Wallraff, 1997). Figure 9A shows the migration paths of GRP125− slugs compared with AX2 slugs. “Wild-type” AX2 slugs approached the light source starting from their point of application in a straightforward manner, whereas the mutant slugs had severe problems in their orientation. Initially, the mutant slugs moved in the right direction, although they often made slight detours during this maneuver. However, shortly after this first phase, GRP125-deficient slugs appeared to lose complete control of their direction, most likely because they failed to readjust their “homing” and progressively acquired a random walk behavior. After 3 d in the chamber, GRP125− slugs were found at random locations with respect to the light source. In most cases they made repeated turns in this final phase and crawled in small circles. Circle paths were also found with wild-type AX2 slugs after 3 d of random walk in complete darkness. An evaluation of 109 trails (≥1 cm) of GRP125− slugs did not produce a single successful approach toward the light source. Most of the GRP125− mutant slugs sporulated immediately at the point of application on the plate, and in most cases less than four trails were observed per plate. This corresponded to only a third of the number of trails that AX2 slugs formed in this experimental setup. GRP125 might therefore also be involved in the signal pathway that controls a slug’s decision to start migration or culminate immediately (Schindler and Sussman, 1977; Williams et al., 1984).
Significantly, GRP125− slugs were not impaired in their ability to migrate over the agar plate. Control experiments without light revealed no difference of the random walk behavior of GRP125− slugs compared with AX2 slugs (Figure 9B). GRP125− slugs were able to migrate for long distances in darkness, and similar numbers of trails were observed for AX2 and GRP125−. The evident defect of GRP125− slugs in the phototaxis assay is therefore a true phototaxis defect. To further investigate the phototaxis defect, fruiting bodies of mutant cells were analyzed for their photodetection and orientation toward a light source. As seen in Figure 9C, GRP125-deficient fruiting bodies were able to sense the direction of incident light, and they turned toward the light source just as well as the fruiting bodies of AX2 cells.
Further Representatives of the GRP125 Type in Cells from Different Sources, Ranging from Lower to Higher Eukaryotes
Western blot analysis was performed on homogenates of cells from different sources using the affinity-purified polyclonal anti-GRP125/S3S4 antibody (Figure 5C). This antibody specifically labeled distinct protein bands with different molecular masses in lysates of Schizosaccharomyces pombe, SF9 cells, mouse brain tissue, macrophages, mouse and rat muscle tissue, and of NIH/3T3 fibroblasts. Because the antibody was directed against gelsolin-like segments 3 and 4 of GRP125, these proteins should belong to the gelsolin family of actin-binding proteins. Most of the proteins detected in the immunoblot shown in Figure 5C could not be attributed to sizes of known gelsolin-related proteins, and furthermore, the antibody did not recognize bona fide gelsolin-related proteins present in these lysates. For example, the anti-GRP125/S3S4 antibody did not recognize the 82-kDa gelsolin in mammalian cell lysates. Similarly the antibody did not cross-react with the 38-kDa CapG in the NIH/3T3 fibroblast lysate or with the gelsolin-like proteins severin (40 kDa) or protovillin (109 kDa) in the Dictyostelium lysate.
Immunofluorescence analysis of NIH/3T3 fibroblasts or human kidney cells (293 cells; our unpublished results) using the anti-GRP125/S3S4 antibody exhibited a similar punctate labeling pattern as was observed in Dictyostelium cells. A similar distribution was found by microinjection of the polypeptide spanning residues Asp-60 to Leu-308 of GRP125 (corresponding to S2 and S3) into NIH/3T3 fibroblasts. This peptide was found to be specifically incorporated into vesicle-like structures that were previously observed in the immunofluorescence analysis (Figure 3, L and M). The punctate label of GRP125 in Dictyostelium parallels that of supervillin in Madin–Darby bovine kidney cells (Pestonjamasp et al., 1997); however, the proteins reveal different distributions. The identical localization of a rhodamine-labeled GRP125/S2S3 peptide to vesicular compartments in mouse fibroblasts suggests the homologous proteins in mouse and Dictyostelium might share a related function.
DISCUSSION
Gelsolin, severin, and several of their relatives control microfilament length, number, and availability of barbed ends on actin filaments for polymerization (Weeds and Maciver, 1993; Eddy et al., 1997; Han et al., 1997). These proteins are generally active at cellular sites that continually require dynamic regulation of actin filament length, such as lamellipodia and the cell cortex. The difference in the subcellular distribution of GRP125 in D. discoideum compared with other gelsolin-like proteins suggests it is not involved in the protrusion of filopodia or lamellipodia or the organization of cell shape. Rather, the localization of GRP125 to structures that appear punctate in the immunofluorescence experiments suggests a role more related to the structure or function of intracellular vesicles.
We have argued on the basis of significant sequence similarity and critical differences of GRP125 to members of the gelsolin family of actin-binding proteins that GRP125 represents a new type of a gelsolin-related protein. Fundamental differences in the microfilament-directed activities of GRP125 compared with other gelsolin-related proteins are anticipated by analyses of their primary structures. Gelsolin-like proteins contain six different segments schematized in Figure 1A. The S1 domain is completely absent in GRP125, and furthermore, significant deviations from consensus sequences exist in the S1S2 linker region and in the first part of S2. According to models of gelsolin domain structure–activity relationships, these deletions should result in a loss of several gelsolin-related protein functions: high-affinity capping of actin filaments depends on activities that reside in S1 (Weber et al., 1991; McLaughlin et al., 1993), whereas an efficient severing activity also requires sites at the beginning of S2 (Kwiatkowski et al., 1985; Way et al., 1989; McGough et al., 1998). Critical differences in the S2 domain would also suggest that GRP125 lacks actin nucleation activity. A corresponding stretch deleted in the S2 segment of protovillin is considered responsible for the inability of protovillin to nucleate filaments (Hofmann, 1994).
Similar to GRP125 in D. discoideum, gelsolin in mammalian cells is solubilized to a large extent by treatment with Triton X-100 under Ca2+-free conditions at neutral pH (platelets [Barkalow et al., 1996], nonadherent neutrophils [Wang et al., 1997], myoblasts [Scholz and Hinssen, 1995], and polymorphonuclear leukocytes [Watts et al., 1995]). However, in Dictyostelium Ca2+ treatment coelutes GRP125 along with a specific set of microfilament proteins from the Triton X-100–insoluble fraction (Jungbluth et al., 1995; Prassler et al., 1997, 1998), suggesting that GRP125 associates with the actin cytoskeleton. Actin is known to be involved in anchoring and transport of vesicles (Kuznetsov et al., 1992; Muallem et al., 1995; van Deurs et al., 1995). Defaque et al. demonstrated a crucial role of the actin-binding protein ezrin and phosphoinositides for actin nucleation on phagosomal membranes (Defacque, Habermann, Egeberg, Diakonova, Roy, Mangeat, Voelter, Marriott, Pfannstiel, Faulstich, and Griffiths, unpublished data), and other actin-binding proteins are known to associate directly or indirectly with actin on the surface of the phagosome (Desjardins et al., 1994). Based on data presented herein, it is not unreasonable to speculate that GRP125 acts, directly or indirectly, at the interface of actin and intracellular vesicles.
Experiments with bacterially expressed GRP125 fragments did not reveal direct binding of GRP125 segments 2 and 4 to F- or G-actin (our unpublished results), as has been observed for other gelsolin relatives (Way et al., 1989; Eichinger and Schleicher, 1992; Pope et al., 1995). These data do not necessarily rule out a microfilament association of GRP125, because it might involve both GRP125’s gelsolin core and its additional N- and C-terminal domains that constitute approximately half of GRP125’s residues. The long actin-binding helix of S2 is conserved in GRP125, whereas the C-terminus of GRP125 reveals basic patches that might resemble potential cryptic actin-binding sites (e.g., KDKRK and KKNKNKNKKKHNR). Furthermore, because the function of GRP125 apparently does not involve modulation of actin filament dynamics, a direct interaction with actin itself is not obligatory. One or more actin-binding proteins could mediate the association of GRP125 with the actin cytoskeleton, for example, through its presumptive coiled-coil regions (Lupas, 1996). Interestingly, the computed coiled-coil region originating in the poly-glutamate run of GRP125 represents an extension on the exposed S5S6 linker described in horse plasma gelsolin (Burtnick et al., 1997). Our sequence analysis predicted that the EEVK repeats are evidently not required to stabilize coiled-coil formation, and these repeat motifs may be involved in the recognition of a target protein.
A search for genes or gene products related to GRP125 using DNA and protein probes directed against segments 3 and 4 of GRP125 failed to label known members of the gelsolin family, such as gelsolin, capG, adseverin, severin, and protovillin. On the other hand, several proteins were specifically detected in Dictyostelium samples or heterologous homogenates of lower and higher eukaryotes. We therefore suggest that these putative gelsolin-like genes and their products show a closer similarity to GRP125 than to prototypical gelsolin. The different molecular weight of the proteins detected by the anti-GRP125/S3S4 antibody is of particular interest, because recent publications have described gelsolin-related proteins with unusual segment organizations. Twinfilin from yeast exhibits two cofilin-like domains (Van Troys et al., 1997; Goode et al., 1998), and murine adseverin (D5) misses the fifth gelsolin segment (Robbens et al., 1998). Gelsolin-related proteins of the GRP125 type are well represented in the D. discoideum genome, because in addition to a GRP125 homologue at least two other GRP125-like proteins were identified by Southern blot analysis. Although GRP125 and its homologue share similar molecular masses, pIs, and subcellular localization, they have distinct expression patterns during development, and the gene products differ in their Ca2+-dependent association with the Triton X-100–insoluble cellular fraction.
In Dictyostelium, different stages during development require particular activities of the actin cytoskeleton, which are governed by expression of specific actin-binding proteins. Within 6 h of starvation, individual cells become polarized and highly motile, whereas at 12–16 h a tissue-like pseudoplasmodium must achieve the concerted movement of its ∼100,000 cells in its search for light and a favorable temperature (reviewed by Gerisch, 1987; Fisher, 1997; Fisher et al., 1997). GRP125 is barely present in vegetative cells, and accordingly, GRP125-deficient cells grow normally. In general, GRP125-null cells were only marginally perturbed during most of the different developmental stages. However, a clear-cut primary defect of the knock-out mutant was observed at the multicellular pseudoplasmodial stage. Lack of GRP125 causes a progressive degeneration of the ability of slugs to readjust their orientation toward the light. The initial phototactic reaction of GRP125-null slugs suggests that GRP125 itself is not responsible for the detection of light. This is confirmed by the fact that GRP125-deficient fruiting bodies are able to detect light and to respond by turning toward the source. Thus, the orientation toward a light source may be another instance of similar signaling pathways operating in slugs and fruiting bodies (Bonner et al., 1985, 1988; Feit et al., 1987). Because the same type of cells, the (pre)stalk cells, control photodetection and phototactic behavior, identical components and mechanisms appear to be engaged for light detection both in slugs (Fisher, 1997) and in fruiting bodies, and evidently this process is not affected in fruiting bodies lacking GRP125. Moreover, GRP125-null slugs are perfectly able to migrate without GRP125. Apparently, it is the sustained readjustment of the orientation to light that is impaired in the absence of GRP125. We have argued that features of its primary structure predispose GRP125 to having an adapter function (see above), and this might couple photodetection to the locomotory apparatus of cells in the slug. In this context it is interesting that the association of a fraction of GRP125 with the Triton X-100–insoluble cellular material is determined by the presence of Ca2+, which is a central signal transduction component in phototaxis (Fisher, 1997).
Both the molecular and the functional characterization introduce GRP125 as a new type of a gelsolin-related molecule. This new type of a gelsolin-related molecule may be involved in providing a functional connection between intracellular vesicles and the microfilament cytoskeleton. GRP125 is evidently indispensable during phototactic migration of Dictyostelium pseudoplasmodia: in the natural habitat of D. discoideum, GRP125-deficient slugs would most often fail to approach the soil surface. Without access to the surface, fruiting bodies produced in the course of development would not be able to disperse their spores to locations with a sufficient supply of bacteria. We conclude therefore that GRP125 is essential for propagation and thus viability of Dictyostelium cells.
ACKNOWLEDGMENTS
We thank S.A. Smith and A. Baskaya for assistance in the preparation of mAbs and G. Rahn for iodination of antibodies. We are grateful to Drs. J. Faix, I. Hangen-Mordi, M. Maniak, J. Prassler, and E. Wallraff for stimulating discussions and experimental advice. This work was supported by a grant from the Max-Planck Society (MA 215) to G.M. The DNA sequence described in this paper has been assigned GenBank accession number U95159.
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