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. Author manuscript; available in PMC: 2008 Sep 2.
Published in final edited form as: Biochemistry. 2006 May 30;45(21):6644–6655. doi: 10.1021/bi0601757

Figure 7.

Figure 7

Hydrogen bonds (black lines) between NI and partner base. The low energy structures of Table 3 are shown. The base pairs are obtained from the trajectory average structures of the selected simulation window. Hydrogen bonds shown have occupancy greater than 50%. Major and minor groove sides for all structures are designated in the first pair.