Abstract
G-protein-coupled receptors are generally thought to be organized as dimers; whether they form higher order oligomers is a topic of much controversy. We combined bioluminescence/fluorescence complementation and energy transfer to demonstrate that at least four dopamine D2 receptors are located in close molecular proximity in living mammalian cells, consistent with their organization as higher order oligomers at the plasma membrane. This implies the existence of multiple receptor interfaces. In addition to the symmetrical interface in the fourth transmembrane segment (TM4) we identified previously by cysteine (Cys) crosslinking, we now show that a patch of residues at the extracellular end of TM1 forms a second symmetrical interface. Crosslinking of D2 receptor with Cys substituted simultaneously into both TM1 and TM4 led to higher order species, consistent with our novel biophysical results. Remarkably, the rate and extent of crosslinking at both interfaces were unaltered over a 100-fold range of receptor expression. Thus, at physiological levels of expression, the receptor is organized in the plasma membrane into a higher order oligomeric structure.
Keywords: BRET, crosslinking, dopamine, GPCR, higher order
Introduction
G-protein-coupled receptors (GPCRs) comprise a diverse, well-studied system for transducing signals from the extracellular milieu to a variety of intracellular signalling molecules (Bartfai et al, 2004). GPCRs have been inferred to be dimers in the plasma membrane (Pin et al, 2007; but see Chabre et al, 2003; Chabre and le Maire, 2005; James et al, 2006; Meyer et al, 2006). Class C receptors form homo- and heterodimers but have been inferred not to be organized as higher order oligomers (Brock et al, 2007). In contrast, several lines of evidence have suggested that class A receptors might exist as higher order oligomers, although this remains controversial (Chabre et al, 2003).
Despite an explosion of recent interest, our understanding of the structural details and functional role of GPCR oligomerization is still limited. Most importantly, it has not been established whether activation of class A rhodopsin-like GPCRs is affected by their organization in a particular quaternary structure. Recently, both rhodopsin (Bayburt et al, 2007) and β2-adrenergic receptor (B2AR) (Whorton et al, 2007) have been shown to signal efficiently to G proteins when reconstituted into lipid nanodiscs containing only a single receptor. Thus, after solubilization and reconstitution, these GPCRs can function alone. However, whether in fact they do function alone in vivo cannot be addressed by such studies and requires an exploration of their native organization.
Much evidence indicates that class C receptors exist and function as homo- or heterodimers (reviewed in Pin et al, 2003). Findings in class A glycoprotein hormone receptors support the existence of trans- as well as cis-activation (Ji et al, 2002), which requires them to be organized at least as dimers. In addition, ligand binding to one protomer in a GPCR dimer appears to be sufficient to cause an activation-like conformational change in the unoccupied protomer (Damian et al, 2006; Brock et al, 2007), consistent with transfer of information between the protomers and thus with a functional role of dimerization.
An understanding of the structural basis of crosstalk between receptors must include their interfaces, but information about these interactions is still limited. In various class A receptors, cysteine (Cys) crosslinking studies have supported a contribution of transmembrane 4 (TM4) (Guo et al, 2003, 2005; Klco et al, 2003; Kota et al, 2006) or TM1 and TM2 (Klco et al, 2003) to a symmetrical interface. FRET studies performed in the alpha-factor yeast GPCR supported a contribution of TM1 to the dimer interface (Overton and Blumer, 2002). Work with peptides and receptor fragments has supported a contribution of TM1, TM4 and/or TM6 to interaction surfaces (Hebert et al, 1996; Ng et al, 1996; Baneres and Parello, 2003; Carrillo et al, 2004). Recently, a role for TM4 as part of a dimerization interface has been extended to the class B secretin-like class of GPCRs (Harikumar et al, 2007).
Given the placement of TM1 and TM4 in the high-resolution structures of rhodopsin (Palczewski et al, 2000) and the B2AR (Cherezov et al, 2007), it is not possible for these segments to contribute to the same dimer interface. Although not without substantial controversy (Chabre et al, 2003), higher order packing of native rhodopsin into rows of well-organized protomers has been visualized by atomic force microscopy (AFM) (Fotiadis et al, 2003), and biochemical and biophysical findings in other GPCRs also suggest the possibility of higher order organization (Park and Wells, 2004; Lopez-Gimenez et al, 2007; Philip et al, 2007). A higher order organization of GPCRs could simultaneously provide for symmetrical TM1 and TM4 interfaces (Liang et al, 2003).
Here, we use protein complementation assays combined with resonance energy transfer to demonstrate that in living mammalian cells, the dopamine D2 receptor (D2R) is organized in a unit comprised of at least four protomers. In addition to the symmetrical interface in TM4 we established previously by Cys crosslinking, in the present work, we identified a patch of residues at a second symmetrical interface at the extracellular end of TM1. As predicted by our biophysical data, crosslinking of receptors with Cys substituted simultaneously into both TM1 and TM4 led to higher order species, consistent with a higher order organization of D2R in the plasma membrane of intact cells. The rate and extent of crosslinking were unaltered over a 100-fold range of receptor expression, suggesting that the receptor is organized into a higher order structure at physiological levels of expression.
Results
Higher order oligomerization: resonance energy transfer evidence
Given the controversy regarding the possibility that class A GPCRs are organized as higher order oligomers, we developed a biophysical approach using a combination of luminescence and fluorescence complementation and energy transfer approaches to explore the higher order structure of the D2R in living cells. First, we used bimolecular fluorescence (BiFC) (Hu et al, 2002) and luminescence (BiLC) (Paulmurugan et al, 2004) complementation assays to study the D2R dimer. Split fluorescent (or luminescent) proteins are not fluorescent (or luminescent) when expressed alone, but when fused to proteins that are located in close proximity, they can be assembled early in biosynthesis and thereby complement fluorescence (or luminescence) and report on molecular proximity (Kerppola, 2006).
Coexpression of C-terminally tagged D2R with either split monomeric Venus (mVenus) (Zacharias et al, 2002) (D2–V1 and D2–V2) or split Renilla luciferase 8 (RLuc8) (Loening et al, 2006) (D2–L1 and D2–L2) resulted in efficient complementation of fluorescence or luminescence, respectively (Figure 1A and C). Evidence for specificity of the interactions came from experiments using the thyrotropin receptor (TSHr) fused at its C terminus to split Venus or RLuc8. TSHr readily complemented with TSHr (data not shown), but much lower levels of heterocomplementation were observed between D2R and TSHr with either combination of constructs (Figure 1B and D).
Homogeneous time-resolved fluorescence (HTRF) experiments using probes directed against distinct N-terminal epitope tags in the split D2R constructs confirmed their interaction at the cell surface. Complementation of the split probes did not affect energy transfer (Figure 1A inset), indicating that complementation does not enhance D2R–D2R interactions. Thus, the proximity of receptors in a dimeric or oligomeric complex early in biosynthesis (Kerppola, 2006) is maintained on the plasma membrane, with or without complementation. To confirm that complementation is without impact on plasma membrane expression, we performed confocal microscopy analysis of various combinations of the transfected receptor constructs. As expected, Venus complemented by D2–V1 and D2–V2 is almost exclusively on the plasma membrane (Supplementary Figure 1c). In striking contrast, the lower levels of complementation of TSHr and D2R originate exclusively from receptor complexes that are retained intracellularly (Supplementary Figure 1c). Similar intracellular retention was observed upon coexpression of D2R–V1 and the single membrane-spanning protein CD8 fused to V2, which was tested as an additional control (Supplementary Figure 1c). We also carried out cell surface fluorescence-activated cell sorting (FACS) analysis, which indicated that any combination of TSHr and D2R that can complement (V1–V2 or L1–L2 in both orientations) leads to complete intracellular retention of TSHr (Supplementary Figure 1d inset). Thus, the low nonspecific complementation appears to result from receptors that become inappropriately attached by cotranslational folding of Venus or RLuc8, but the quality control mechanism of the cell does not allow these species to reach the cell surface.
In parallel, we also used bioluminescence resonance energy transfer (BRET) (Xu et al, 1999) to study receptor interactions. We performed BRET titration experiments with cells coexpressing constant amounts of D2–RLuc8 and increasing concentrations of D2–Venus (full-length versions of the previously split proteins). A specific and saturable BRET signal was observed for D2R–D2R (Figure 2A), as well as for the TSHr–TSHr (data not shown), which is known to homodimerize (Urizar et al, 2005). The level of BRET between D2R–RLuc8 and TSHr–Venus was low, but the expression levels of the TSHr–Venus were not sufficient to titrate fully the D2–RLuc8. To insure that the direction and the orientation of the BRET between the receptors did not affect the results and to allow full titration between TSHr and D2R, we swapped the probes and still observed very low and right-shifted BRET, which in this case was titrated fully (Figure 2A). In contrast to the hetero-complementation studies described above, TSHr–RLuc8 was seen on the plasma membrane in the presence of D2–Venus (data not shown).
To confirm the specificity of these interactions, to rule out a role of the biosensor orientation and to avoid biased comparisons between different BRET couples, we performed BRET experiments in the presence of different concentrations of untagged receptor, which would be expected to inhibit the BRET signal by competing for dimerization with the receptors fused to the probes. To ensure that the signal was consistent over the entire range of coexpression, we performed these experiments over a wide range of donor concentrations. Coexpression of untagged D2R decreased the BRET signal, whereas coexpression of TSHr or CXCR4 was without effect (Figure 2B). Competition over the entire titration range rules out changes in the absolute or relative levels of expression of the BRET probes as the cause of the decreased BRET signal (Figure 2B and C). The decrease in maximal BRET, without an associated increase in BRET50, suggests caution in the use of BRET50 analysis in studying receptor interactions that might be stable.
Thus, BiFC, BiLC, HTRF and BRET assays all were consistent with the robust formation of D2R ‘dimers', although, one can only infer from these parallel approaches that the receptor forms at least a dimer. Once we established the basic ‘dimeric' unit, we combined the different constructs to probe the existence of higher order oligomeric complexes in living cells. Complementing RLuc8 with coexpression of D2–L1 and D2–L2 resulted in a very efficient donor for the full-length D2–Venus but not for the TSHr–Venus (Figure 2D). As for the full-length BRET (see above), only the complemented RLuc8 generated by coexpressing D2–L1 and D2–L2 was a donor for D2–Venus and none of the other combinations assayed substituting L1, L2 or both with TSHr–splits gave significant BRET signals (Supplementary Figure 2a and b).
Similar results were obtained expressing constant amounts of D2–RLuc8 full-length construct as donor with the split acceptor constructs, mVenus (D2–V1 and D2–V2) (Figure 2E; Supplementary Figure 2c). All the tested probes were expressed and functional (Supplementary Figure 1a and b) and transfections were adapted so that the relative expression levels would be comparable. Although the TSHr constructs could not be combined with the D2R constructs to produce ‘three-protomer' BRET, under similar conditions, BRET was readily observed when all the probes were attached to TSHr (Supplementary Figure 2b). In summary, when the three probes were all from D2R or all from TSHr, regardless of which reporter was split, BRET was most efficient, whereas the titration curves were right shifted dramatically when one of the protomers was substituted by the other receptor. This set of experiments confirms that D2R can form higher order complexes containing at least three receptors.
To establish that the minimum oligomeric unit is formed by at least four receptors, we carried out experiments in which both the donor and the acceptor were split and complemented. We coexpressed constant amounts of split RLuc8 (D2–L1 and D2–L2) with increasing amounts of split mVenus (D2–V1 and D2–V2), and we detected specific and saturable energy transfer between the complemented probes used as donor and acceptor, respectively (Figure 2F). Again, when any of the four probes was substituted by a homologous TSHr probe, the BRET curves were dramatically right shifted. It is important to note that complementation of either luminescence or fluorescence requires that the RLuc8 or Venus be assembled early in biosynthesis. Therefore, given the enormous number of ‘non-productive' receptor combinations that would fail to show fluorescence or luminescence, or would show luminescence and/or fluorescence but not BRET (Supplementary Figure 5), our observation of a substantial ‘four-protomer BRET' signal is remarkable. Our demonstration of resonance energy transfer between the complemented RLuc8 and the complemented Venus shows that at least four receptors are located in close molecular proximity in living cells.
A patch of residues at the extracellular end of TM1 forms a second symmetric dimerization interface
We had previously identified a site of symmetrical interaction in TM4 of D2R (Guo et al, 2003, 2005), but the energy transfer data described above imply the existence of another interface. A molecular model proposed based on the AFM data of native murine rhodopsin (Fotiadis et al, 2003; Liang et al, 2003) placed a second symmetrical interface in TM1, and we therefore first focused on this region. In our background D2R construct (see Methods), the endogenous Cys1684.58 at the TM4 interface is mutated to Ser to eliminate crosslinking (Guo et al, 2003). In this background, we mutated each residue in TM1 to Cys, one at a time, from the extracellular end (P321.30) to the beginning of the putative first intracellular loop (R611.59) and stably expressed these mutants in HEK 293 cells. On the basis of immunoblotting, 28 of the mutant receptors were well expressed and maturely glycosylated, whereas mutation to Cys of the highly conserved residue N521.50 led to loss of immunoreactivity (Figure 3A and B). Of the 28 Cys mutants that were expressed, treatment with 1 mM copper phenanthroline (CuP) led to oxidative crosslinking of four mutants (Y361.34C, Y371.35C, L401.38C and L431.41C) to a species with a mobility on SDS–PAGE consistent with that of a D2R dimer (Figure 3A and B), as we observed previously with selected Cys in TM4 (Guo et al, 2005). To estimate the susceptibilities to crosslinking, we treated the mutants with a range of CuP concentrations. As shown in Figure 3, the crosslinking was saturable at all four positions, with different susceptibilities to crosslinking and different maximal crosslinking (Figure 3C–J). The mutant Y371.35C was the most susceptible to crosslinking (Figure 3E and F).
To explore the potential effect of ligand binding on the TM1 interface, we treated each of the four mutants with a non-saturating concentration of CuP in the presence and absence of either agonist or antagonist. In contrast to our findings in TM4 (Guo et al, 2005), we did not see a significant effect of these ligands on crosslinking of any of the TM1 Cys mutants (Figure 3K and L).
These data suggest that a patch of residues near the extracellular end of TM1 contributes to a symmetrical interface that does not appear to undergo major conformational changes upon ligand binding. Consistent with our predictions (Shi et al, 2001), the recent high-resolution structure of the B2AR (Cherezov et al, 2007), which has much greater sequence similarity with the D2R, showed that the greatest divergence between rhodopsin and the B2AR structure is the presence of a much straighter TM1 in B2AR. We built a homology model of the D2R based on the B2AR structure (see Materials and methods), and packed the TM1 interface to satisfy our crosslinking data (Figure 4). The same packing is not possible in the rhodopsin model, as the TM1 helices would clash in such a configuration (Figure 4D and E).
The configuration that was most compatible with our observed TM1 crosslinking places helix 8 (H8) in direct interaction with H8 from the adjacent protomer (see Discussion). In an attempt to validate this prediction, we created a series of Cys mutations (F4377.64C, L4387.65C and K4397.66C) in H8 and stably expressed these in HEK 293 cells. In intact cells, no crosslinking of the H8 Cys mutants was observed with CuP treatment (data not shown). In contrast, treatment with the membrane permeant crosslinker HgCl2 led to crosslinking of L4387.65C, consistent with the prediction of our model of the TM1 interface (Figures 4A–C and 5C). Thus, based on the biochemical and computational data, we infer that H8 is part of the symmetrical TM1 interface.
Higher order oligomerization: crosslinking evidence
Our biophysical data supporting a complex of at least four receptors and our findings of symmetrical interfaces both in TM4 and in TM1 are not compatible with a simple dimeric configuration. Moreover, the TM1 and TM4 interfaces cannot participate in forming the same symmetric interface given their distinctly different positions in the helix bundle (Figure 4F). We hypothesized, therefore, that they represented two different interfaces and that a higher order oligomeric species would be revealed by crosslinking of both TM1 and TM4 when substituted Cys were combined in the same polypeptide. To test this prediction, we stably expressed a double Cys mutant D2R that contained Y371.35C in TM1 and the endogenous C1684.58 in TM4. Increasing concentrations of CuP resulted in the formation of higher order species (Figure 5A and B). As expected, in the presence of increasing CuP, the fraction of the receptor crosslinked to dimer decreased, whereas trimeric, tetrameric and higher order oligomeric structures increased. These data further support the existence of a higher order oligomeric organization of the D2R. Such a higher order organization is reminiscent of the arrays of rhodopsin visualized by AFM (Fotiadis et al, 2003; Liang et al, 2003), but the differences we observed in the TM1–TM1 interface suggest a somewhat different organization of the oligomeric array (Figure 4F) (see Discussion).
D2R crosslinking is independent of the level of expression
Most of the data in the literature supporting GPCR dimerization come from high-level expression in heterologous cells, although there are a limited number of cases where receptor interactions have been shown in native tissue (reviewed in Pin et al, 2007). To establish that our results are not specific to HEK 293 cells and that D2R oligomerization also occurs in cells that natively express D2R, we expressed the TM1–TM4 double Cys construct Y371.35C–C1684.58 in CAD cells, a catecholaminergic cell line that natively expresses D2R (Pasuit et al, 2004). Crosslinking experiments led to higher order species (Supplementary Figure 3), just as we observed in the HEK 293 studies described above. One potential caveat of our findings and of nearly all studies of GPCR dimerization/oligomerization is that high-level expression might increase receptor interactions through molecular crowding. Importantly, ‘type 2 BRET experiments' (James et al, 2006) in a number of GPCRs including D2R (Salahpour and Masri, 2007) support the specificity and non-collisional nature of our BRET results and a similar analysis of our BRET data leads to the same conclusion. We also observed no effect of crosslinking C1684.58 on either the BRET50 or maximal BRET signal (Supplementary Figure 1e), which also argues for the non-collisional nature of the BRET results. Nonetheless, to address further this potential caveat, we expressed three different receptor mutants, Y371.35C in TM1, C1684.58 in TM4 and the TM1–TM4 double Cys construct Y371.35C–C1684.58, in the Flp-In T-REx system (Materials and methods). This system facilitates the rapid and reproducible creation of highly consistent pools of stable HEK 293 cells expressing different D2R mutants under the control of tetracycline (tet). This allowed us to vary the level of D2R surface expression by controlling the time of tet induction (see Materials and methods). The level of expression of the mutant receptors increased significantly with increasing tet induction time ((in femtomole per milligram membrane protein) from 81±45 to 11 406±1 (141-fold increase) for C1684.58 (Figure 6A–C), from 106±30 to 10 863±1591 (102-fold increase) for Y371.35C (Figure 6D–F) and from 106±21 to 13 085±646 (123-fold increase) for Y371.35C/C1684.58 (Figure 6G–I)) (see Materials and methods). In mouse brain, the density of D2R in striatum is approximately 500 fmol/mg membrane protein (Kellendonk et al, 2006), well within the range explored here. Crosslinking of the individual TM1 and TM4 interfaces with saturating concentrations of CuP resulted in a constant fraction of crosslinking (Figure 6A–F) over the entire range of receptor expression studied. To examine further the impact of expression level, we performed crosslinking experiments with increasing concentrations of CuP in intact cells expressing the single TM1 or TM4 mutants 4 and 21 h after tet induction (Figure 6J–Q). For the TM1 Cys mutant, the apparent rate of crosslinking was similar at these extremely different levels of expression (Figure 6N–Q). For the TM4 Cys mutant, crosslinking was slightly more efficient for the cells expressing lower D2R amounts (4 h tet induction) (Figure 6J–M). Thus, the rates and extents of crosslinking of Cys at the TM1 and TM4 interfaces are very similar over approximately a 100-fold level of expression.
To determine the effect of expression level on the formation of higher order D2R species, we determined maximal crosslinking in the TM1–TM4 double Cys mutant Y371.35C–C1684.58 expressing cells with varying tet induction times leading to a greater than 120-fold range of receptor expression (Figure 6G–I). Consistent with our findings at the individual TM1 and TM4 interface described above, in the double mutant the fraction of dimer, trimer, tetramer and higher order species was similar over the entire range of receptor expression (Figure 6I). In addition, the rate of crosslinking to higher order species was very similar at the two different levels of expression (Supplementary Figure 4).
If crosslinking between receptors resulted from random collisions, then the rate of crosslinking should be dependent on the level of expression. In contrast, we observed that the rate of crosslinking of the TM1 and TM4 interfaces was independent of the expression level (Figure 6; Supplementary Figure 4). This requires that the protomers be preorganized in the plasma membrane at physiologically relevant concentrations.
Discussion
By combining luminescence and fluorescence complementation with energy transfer studies, we have established that the minimal unit for receptor organization in the plasma membrane is four protomers. In addition, by placing Cys simultaneously at TM1 and TM4 we detect crosslinking of four or possibly more receptors in a complex. Moreover, we have been able to delineate the TM segments that participate in two symmetric interfaces in these receptor complexes in the membrane environment.
Several reports suggest that GPCRs not only dimerize but also form higher order complexes or oligomers (Park and Wells, 2004; Lopez-Gimenez et al, 2007; Philip et al, 2007). AFM of native rhodopsin has directly supported such an organization (Fotiadis et al, 2003; Liang et al, 2003), although these observations have been the subject of substantial controversy (Chabre et al, 2003). Our results indicate that the D2R and by implication other related GPCRs do indeed form higher order complexes and most importantly that these interactions are observed at physiological levels of expression. Higher order complexes were not detected in some class C receptors but were detected in others (Brock et al, 2007; Maurel et al, 2008), and further research will be necessary to clarify which GPCRs are organized in higher order complexes. It will also be important to explore the potential role of microdomain localization, such as cholesterol-rich regions, on the organization of GPCRs into higher order oligomers (Meyer et al, 2006).
That we could activate D2R receptor by disulphide trapping of appropriately placed Cys substitutions in TM4 (Guo et al, 2005) suggests an important role of the interface in activation and a coupling between ligand binding and the conformation of the TM4 interface. In the inactive inverse agonist-bound state, crosslinking occurs at the TM4–TM5 interface, whereas, in the active state, crosslinking occurs through a different face of TM4 (Guo et al, 2005). Crosslinking of these different faces may reflect rotation or translation of TM4 at the interface, although such an extensive movement seems unlikely (Guo et al, 2005). Another potential mechanism we proposed to explain these findings was that a more subtle reorganization of an oligomeric array could alter the protomers that are crosslinked, and thereby alter the face of TM4 involved in forming the identified interface (Guo et al, 2005). Our current data support the existence of such a higher order organization, with symmetrical interfaces at both TM4 and TM1. Curiously, the receptor protomers can be packed into an oligomeric arrangement that is consistent with formation of an interface involving TM1, the ‘active' interface in TM4, and the ‘inactive' TM4–TM5 interface (Figure 4F). How accurately this model depicts the exact packing and whether these interfaces can be formed simultaneously or exist only in particular conformational states remain to be determined. Interestingly, as predicted by the model (Figure 4F), a D2R with Cys substituted for 1.35 in TM1 and 5.41 in TM5 also led to crosslinking to higher order species (data not shown) that were indistinguishable from those crosslinked in the 1.35C–4.58C construct (Figure 5A and B).
Structural studies of the receptor–G–protein interface have led to the identification of several points of contact between the G protein and the receptor on both α- and βγ-subunits (Hamm, 2001), and in the native membrane, some of these contacts have been proposed to be contributed by a second GPCR protomer (Krzysko et al, 2007). Consistent with this proposal, mass analysis of crosslinked LBT4 receptor reconstituted with G protein suggested that the signalling unit is comprised of two receptors and one heterotrimeric G protein (Baneres and Parello, 2003). The nanodisc experiments (Introduction) show clearly that a second protomer is not essential for a single GPCR to activate G protein efficiently. However, when a second protomer is present in vivo, it could modulate G protein activation. This is particularly important for heterooligomeric signalling in which ligand binding to one protomer alters signalling through the other protomer. Indeed, ligand binding to one protomer in a GPCR dimer appears to be sufficient to cause an activation-like conformational change in the unbound protomer (Damian et al, 2006; Brock et al, 2007), consistent with transfer of information between the protomers and thus with a functional role of dimerization.
Our previous crosslinking findings established the contribution of TM4 of the D2R to a symmetric ‘dimer' interface (Guo et al, 2003, 2005). Here, we show the existence of a second symmetrical interface in TM1, consistent with indications that TM1 may have a function in ‘dimerization' in a number of other GPCRs (Overton and Blumer, 2002; Carrillo et al, 2004; Ruprecht et al, 2004; Kota et al, 2006; Salom et al, 2006). Modelling a TM1–TM1 interface of D2R homodimers based on the rhodopsin template is complex given the relatively low sequence identity in this region. Indeed, we had previously inferred that the structure of TM1 and its position within the TM bundle is likely to be quite different in the biogenic amine receptors than in rhodopsin (Shi et al, 2001). The recent availability of the high-resolution structure of the B2AR confirmed this hypothesis (Palczewski et al, 2000; Cherezov et al, 2007). TM1 of B2R is considerably straighter than in rhodopsin, which leads to a displacement of the extracellular end of TM1 by ∼7 Å when the Cα's of residues 1.48–1.59 in the intracellular regions are superimposed. Modelling the D2R–TM1 interface using the B2AR as a structural template, the extracellular patch of crosslinked residues in D2R is compatible with a TM1–TM1 packing interface that is not possible in a rhodopsin-based model, as the TM1 helices would clash (Figure 4D and E). This configuration also places H8 at the TM1–TM1 interface (Figure 4A and C). We tested our model with several new Cys substitutions in H8, and the crosslinking of L4387.65C was consistent with our predictions.
Although consistent with a higher order structure with symmetric interfaces involving TM4 and TM1, in the model based on inferences from AFM of native rhodopsin (Liang et al, 2003; Supplementary Figure 6), different TM1 residues participate and H8 does not contribute to the interface. Moreover, the ‘active' TM4 interface in this array does not appear to be sufficiently close to explain our crosslinking results. Other symmetric TM1 interfaces have been observed in crystal structures, but as both rhodopsin and B2AR are monomers in detergent, the interfaces formed upon crystallization are of uncertain relevance to native interfaces in the plasma membrane. Nonetheless, our TM1 interface is most similar to that of metarhodopsin I (Ruprecht et al, 2004; Supplementary Figure 6), which also places H8 at the interface, but the molecular details differ due to the more extensive kink in TM1 of metarhodopsin (Supplementary Figure 6).
In summary, we have provided evidence using independent biochemical and biophysical approaches that D2R forms higher order oligomers in living cells. We have demonstrated that this higher order organization appears to be independent of expression level over greater than a 100 fold range that includes physiological levels of expression. Furthermore, we have gained insight into the oligomer by demonstrating that TM1 and H8 form a second symmetric interface in addition to the TM4 interface that we identified previously, and we have interpreted our data in a structural context by building a model of the TM1 interface based on the recently available high-resolution structure of the B2AR. Our results are consistent with mounting evidence that in the native membrane the functional unit of a GPCR involves more than a single receptor protomer.
Materials and methods
Numbering of residues, receptor constructs and transfection
Residues are numbered both according to their positions in the human D2short receptor (D2R) sequence and also relative to the most conserved residue in the TM in which they are located (Ballesteros and Weinstein, 1995). The most conserved residue in each TM is assigned the position index ‘50', for example, in TM1, Asn-521.50, and therefore Gly-511.49 and Val-531.51. TM1 Cys mutations in pCIN4 were generated and confirmed as described (Guo et al, 2003). Each mutation was generated in an N-terminally Flag-tagged background D2R construct in which Cys-1183.36, Cys-1684.58, Cys-3706.61 and Cys-3726.63 were mutated to Ser, and stably expressing pools of HEK 293 cells were created as described (Guo et al, 2003). Note that the binding properties and accessibility of these Cys substitutions in a slightly different background have been characterized in detail (Shi et al, 2001), and a representative set of the mutants used here was shown to be activated similarly by dopamine (Supplementary Figure 1b), confirming that their folding and overall structure are expected to represent that of wild-type receptor.
Selected D2R constructs were subcloned into pcDNA5/FRT (Invitrogen) and co-transfected with the recombinase expression plasmid pOG44 in a 1:9 ratio, to make tet-inducible Flp-In T-REx-293 stable cells, through selection with 500 μg/ml hygromycin, according to the manufacturer's instructions.
For the transient expression experiments, different sensors or split sensors were subcloned into the wild-type Flag–D2R in the pcDNA 3.1 expression vector, sequenced and expressed in HEK 293T cells using polyethylenimine in a 1:3 ratio (Polysciences Inc.). The experiments were performed 48 h post-transfection. The probes (full length or splits of mVenus and RLuc8) were fused to the C terminus of the D2R with a 24 amino-acid linker between the two proteins. mVenus and RLuc8 were kindly provided by D Piston and S Gambhir, respectively. D2–V1 encodes the N-terminal split of mVenus (aa 1–155) fused to the D2R, D2–V2 expresses the D2R fused to C-terminal mVenus (156–240), D2–L1 expresses the N terminus of RLuc8 fusion (aa 1–229) and D2–L2 expresses the RLuc8 C-terminal fusion (aa 230–311). Unless otherwise specified, the D2R was N-terminally Flag tagged for cytometry experiments, to determine the receptor level of expression in the cell surface. TSHr constructs were subcloned into the TSHr–RLuc pcDNA 3.1 template kindly provided by S Costagliola. 3HA-CXCR4 in pcDNA 3.1 was from the Missouri cDNA Resource Center (www.cdna.org).
Complementation, HTRF, BRET and FACS
BiFC or BiLC complementation was performed in HEK 293T cells coexpressing the different receptor–split fusions. The cells were harvested 48 h post-transfection, washed and resuspended in PBS. Approximately 200 000 cells per well were distributed in 96-well plates and the fluorescence (excitation at 510 nm and emission at 540 nm, 1 s recording) and luminescence in the presence of 5 μM coelenterazine H (no filters, 5 min post-coelenterazine addition and 1 s recording) were quantified (Polarstar and Pherastar; BMG). In parallel, FACS was performed to determine surface expression of each receptor construct, as described (Costagliola et al, 1998) with the Guava Easy Cite cytometer (Guava Techonologies). Briefly, a fraction of the same cells used for complementation were harvested and incubated with anti-Flag (Sigma), anti-Myc (Hybridoma Facility, Mount Sinai, New York) or BA8 (anti-TSHr-specific monoclonal antibody kindly provided by S Costagliola, IRIBHM, Brussels, Belgium), washed and incubated with the secondary anti-mouse antibody labelled either with phycoerythrin (PE) (Invitrogen) or with double PE-AF647 (to avoid cross-contamination with Venus in the yellow channel; Invitrogen). The BRET experiments were performed as described (Urizar et al, 2005) with cells in suspension and were quantified with a Polastar (for full-length probes) or a Pherastar (for the experiments with the different trimers and tetramers because of its higher sensitivity) (BMG). Similar results were obtained when BRET with the full-length probes was measured using the Pherastar (data not shown). HTRF was performed as described (Urizar et al, 2005) with anti-Flag and anti-Myc antibodies labelled with Europium Kryptate and AF647, respectively (Cis Bio, France).
Crosslinking, drug treatment and immunoblotting
The crosslinking reagents CuSO4 and 1,10-phenanthroline in a 1:2 molar ratio (CuP) or HgCl2 were applied to intact adherent HEK 293 cells stably expressing the indicated Cys mutants as previously detailed (Guo et al, 2003, 2005). For Cys mutants inducibly expressed in Flp-In T-REx-293 cells, CuP crosslinking was carried out in the same way after inducing the receptor expression with 1 μg/ml tet for the indicated time. When indicated, the inverse agonist sulpiride (10 μM) was incubated with the cells at 37°C for 60 min before crosslinking and maintained in the buffer during crosslinking. Quinpirole (10 μM) was added for 15 s and then removed immediately before the addition of CuP as described previously for dopamine application (Guo et al, 2005). The crosslinking reaction was stopped by washing twice with PBS buffer and addition of 10 mM N-ethylmaleimide (NEM). The cells were harvested and extracted, 20 μg of protein was loaded per sample and SDS–PAGE and immunoblotting using the anti-Flag polyclonal antibody (1:10 000; Sigma) were performed as described (Guo et al, 2005). Crosslinking rates were calculated using GraphPad Prism 4.0 software and one-phase exponential association fits.
Quantification of induced D2R expression
Expression of the mutants in Flp-In T-REx 293 cells was modulated by increasing 1 μg/ml tet induction time. The amount of receptor in the standard D2R samples was determined by measuring the Bmax (femtomoles per milligram membrane protein) from saturation binding with [3H]N-methylspiperone as described (Guo et al, 2003). D2R samples spanning the entire expression range of induced Cys mutants were loaded for SDS–PAGE and immunoblotting and a standard curve was created relating the blot densities to standard samples of known receptor concentration using GraphPad Prism 4. The expression levels of the Cys mutants were calculated from the standard curve using the measured mutant OD loaded on the same immunoblot with the standard samples.
Homology modelling of the D2DR dimer
A three-dimensional (3D) molecular model of the TM domain of the human D2R was built using the recent crystal structure of B2AR at 2.4 Å resolution as a structural template (Cherezov et al, 2007). An oligomeric model of the B2AR was used as a template to build a homology model of a corresponding D2R oligomer. This oligomeric arrangement is represented in cartoon form in Figure 4F. We first built a symmetric TM4–TM5 dimeric arrangement of the B2AR (green and purple protomers) based on our crosslinking results (Guo et al, 2005) and the oligomeric model of rhodopsin derived from AFM (Liang et al, 2003). Using the Insight II User Graphical Interface (Accelrys Inc.), we translated copies of the green (becomes grey) and purple (becomes blue) protomers in opposite directions along the x axis to generate two symmetric TM1 interfaces, indicated in Figure 4F by the black Cβ's connected by black lines. Finally, this linear array was replicated and placed in a second row to create a symmetric TM4 ‘active' interface, indicated in Figure 4F by the red Cβ's connected by red lines.
A sequence alignment of 37% identity over the TM regions was used to generate 100 models of D2R oligomers using the B2AR oligomeric template described above and the MODELLER 8v2 (Sali and Blundell, 1993) molecular probability density function, which employs methods of conjugate gradients and molecular dynamics with simulated annealing at the end of the modelling routine. The structural accuracy of the best three models as determined by the lowest MODELLER objective function value was assessed by their 3D profiles calculated with the VERIFY-3D program (Luthy et al, 1992).The most accurate model as judged by the highest 3D–1D averaged score was selected.
Supplementary Material
Acknowledgments
We are very grateful to S Gambhir for providing cDNA coding for RLuc8, D Piston for mVenus, S Costagliola for TSHr and mAb recognizing the TSHr, D Chikaraishi for the CAD cells, to I Migeotte for assistance with the confocal microscopy, to A Karlin, N Lambert and H Weinstein for helpful discussion and comments on the paper, and to G Schertler for providing us with the modelled coordinates of the metarhodopsin I structure. This study was supported by NIH grants DA022413 and MH54137 (JAJ) and DA017976 (MF), by NARSAD and the Lieber Center for Schizophrenia Research and Treatment, and by an EMBO Long-term Fellowship (EU).
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