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. 1985 Jan;53(1):340–342. doi: 10.1128/jvi.53.1.340-342.1985

Mapping of transcription terminators of bacteriophages phi X174 and G4 by sequence analysis.

V Brendel
PMCID: PMC255051  PMID: 3155555

Abstract

An algorithm to locate transcription terminators (V. Brendel and E. N. Trifonov, Nucleic Acids Res. 12:4411-4427, 1984) was applied to the genomes of bacteriophages phi x174 and G4. The proposed sites are similarly located in phiX and G4 and fit with transcript lengths previously observed in vivo and in vitro.

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Selected References

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  1. Axelrod N. Transcription of bacteriophage phi-X174 in vitro: selective initiation with oligonucleotides. J Mol Biol. 1976 Dec 25;108(4):753–770. doi: 10.1016/s0022-2836(76)80115-5. [DOI] [PubMed] [Google Scholar]
  2. Axelrod N. Transcription of bacteriophage phiX174 in vitro: analysis with restriction enzymes. J Mol Biol. 1976 Dec 25;108(4):771–779. doi: 10.1016/s0022-2836(76)80116-7. [DOI] [PubMed] [Google Scholar]
  3. Brendel V., Trifonov E. N. A computer algorithm for testing potential prokaryotic terminators. Nucleic Acids Res. 1984 May 25;12(10):4411–4427. doi: 10.1093/nar/12.10.4411. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Brosius J., Dull T. J., Sleeter D. D., Noller H. F. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol. 1981 May 15;148(2):107–127. doi: 10.1016/0022-2836(81)90508-8. [DOI] [PubMed] [Google Scholar]
  5. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Godson G. N., Barrell B. G., Staden R., Fiddes J. C. Nucleotide sequence of bacteriophage G4 DNA. Nature. 1978 Nov 16;276(5685):236–247. doi: 10.1038/276236a0. [DOI] [PubMed] [Google Scholar]
  7. Grohmann K/Smith L. H., Sinsheimer R. L. New method for isolation and sequence determination of 5'-terminal regions of bacteriophage phiX174 in vitro mRNAs. Biochemistry. 1975 May 6;14(9):1951–1955. doi: 10.1021/bi00680a023. [DOI] [PubMed] [Google Scholar]
  8. Hayashi M. N., Hayashi M., Imai M. Bacteriophage phi X174-specific mRNA synthesis in cells deficient in termination factor rho activity. J Virol. 1981 Apr;38(1):198–207. doi: 10.1128/jvi.38.1.198-207.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Hayashi M. N., Hayashi M., Müller U. R. Role for the J-F intercistronic region of bacteriophages phi X174 and G4 in stability of mRNA. J Virol. 1983 Oct;48(1):186–196. doi: 10.1128/jvi.48.1.186-196.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Hayashi M., Fujimura F. K., Hayashi M. Mapping of in vivo messenger RNAs for bacteriophage phiX-174. Proc Natl Acad Sci U S A. 1976 Oct;73(10):3519–3523. doi: 10.1073/pnas.73.10.3519. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Kapitza E. L., Stuckacheva E. A., Shemyakin M. F. The effect of the termination rho factor and ribonuclease III on the transcription of bacteriophage phi X174 DNA in vitro. FEBS Lett. 1976 Apr 15;64(1):81–84. doi: 10.1016/0014-5793(76)80254-2. [DOI] [PubMed] [Google Scholar]
  12. Kapitza E. L., Stukacheva E. A., Shemyakin M. F. Effect of Escherichia coli rho factor and RNase III on the formation of phi X174 RNA in vitro. FEBS Lett. 1979 Feb 1;98(1):123–127. doi: 10.1016/0014-5793(79)80167-2. [DOI] [PubMed] [Google Scholar]
  13. Lau L. F., Roberts J. W., Wu R. Transcription terminates at lambda tR1 in three clusters. Proc Natl Acad Sci U S A. 1982 Oct;79(20):6171–6175. doi: 10.1073/pnas.79.20.6171. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Luk K. C., Szybalski W. A cluster of leftward, rho-dependent t'J terminators in the J gene of coliphage lambda. Gene. 1983 Mar;21(3):175–191. doi: 10.1016/0378-1119(83)90001-x. [DOI] [PubMed] [Google Scholar]
  15. Luk K. C., Szybalski W. Tandem transcription-termination sites in the late rightward operon of bacteriophage lambda. Mol Gen Genet. 1983;189(2):289–297. doi: 10.1007/BF00337819. [DOI] [PubMed] [Google Scholar]
  16. Luk K. C., Szybalski W. The tL2 cluster of transcription termination sites between genes bet and ral of coliphage lambda. Virology. 1983 Mar;125(2):403–418. doi: 10.1016/0042-6822(83)90212-x. [DOI] [PubMed] [Google Scholar]
  17. McMahon J. E., Tinoco I., Jr Sequences and efficiencies of proposed mRNA terminators. Nature. 1978 Jan 19;271(5642):275–277. doi: 10.1038/271275a0. [DOI] [PubMed] [Google Scholar]
  18. Otsuka J., Kunisawa T. Characteristic base sequence patterns of promoter and terminator sites in phi X174 and fd phage DNAs. J Theor Biol. 1982 Aug 7;97(3):415–436. doi: 10.1016/0022-5193(82)90374-5. [DOI] [PubMed] [Google Scholar]
  19. Sanger F., Coulson A. R., Friedmann T., Air G. M., Barrell B. G., Brown N. L., Fiddes J. C., Hutchison C. A., 3rd, Slocombe P. M., Smith M. The nucleotide sequence of bacteriophage phiX174. J Mol Biol. 1978 Oct 25;125(2):225–246. doi: 10.1016/0022-2836(78)90346-7. [DOI] [PubMed] [Google Scholar]
  20. Smith L. H., Sinsheimer R. L. The in vitro transcription units of bacteriophage phiX174. III. Initiation with specific 5' end oligonucleotides of in vitro phiX174 RNA. J Mol Biol. 1976 Jun 5;103(4):711–735. doi: 10.1016/0022-2836(76)90205-9. [DOI] [PubMed] [Google Scholar]
  21. Staden R. Computer methods to locate signals in nucleic acid sequences. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):505–519. doi: 10.1093/nar/12.1part2.505. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Trifonov E. N. Sequence-dependent variations of B-DNA structure and protein-DNA recognition. Cold Spring Harb Symp Quant Biol. 1983;47(Pt 1):271–278. doi: 10.1101/sqb.1983.047.01.032. [DOI] [PubMed] [Google Scholar]
  23. Van der Avoort H. G., Teertstra R., Versteeg R., Weisbeek P. J. Genes and regulatory sequences of bacteriophage phi X174. Biochim Biophys Acta. 1983 Oct 13;741(1):94–102. doi: 10.1016/0167-4781(83)90014-3. [DOI] [PubMed] [Google Scholar]
  24. Wu A. M., Christie G. E., Platt T. Tandem termination sites in the tryptophan operon of Escherichia coli. Proc Natl Acad Sci U S A. 1981 May;78(5):2913–2917. doi: 10.1073/pnas.78.5.2913. [DOI] [PMC free article] [PubMed] [Google Scholar]

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