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. 1983 Apr;46(1):196–203. doi: 10.1128/jvi.46.1.196-203.1983

Transcriptional regulation of three double-stranded RNA segments of bacteriophage phi 6 in vitro.

Y Emori, H Iba, Y Okada
PMCID: PMC255108  PMID: 6827650

Abstract

Three double-stranded RNA segments of bacteriophage phi 6 (L, M, and S) were transcribed in vitro by a virion-associated RNA polymerase. Regulation of L transcription was distinct from regulation of M and S transcription. Transcription of the L segment, which codes for early proteins, required manganous ion and high concentrations of all four ribonucleoside triphosphates and was inhibited by polyamines such as spermine. Transcription of the M and S segments, which code for late proteins, required manganous or magnesium ion and relatively low concentrations of all ribonucleoside triphosphates except GTP and was enhanced by polyamines. Optimal conditions for L transcription were more stringent than those for M and S transcription. These two apparently different patterns produced in in vitro transcription presumably reflect the two distinct in vivo transcription patterns; i.e., (i) similar amounts of three single-stranded RNA species were transcribed from the three corresponding segments of double-stranded RNA (early pattern) and (ii) a much larger amount of single-stranded RNA species was transcribed from M and S segments than from the L segment (late pattern). The early transcription pattern may be changed into the late pattern by a change of environment, such as substrate concentration. This suggests that the different enzymatic properties under the different environmental conditions of the virion-associated transcriptase are responsible for the transcriptional regulation throughout the infection cycle of bacteriophage phi 6.

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Selected References

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  1. Cuppels D. A., Van Etten J. L., Burbank D. E., Lane L. C., Vidaver A. K. In vitro translation of the three bacteriophage phi 6 RNAs. J Virol. 1980 Jul;35(1):249–251. doi: 10.1128/jvi.35.1.249-251.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Emori Y., Iba H., Okada Y. Assignment of viral proteins to the three double-stranded RNA segments of bacteriophage phi 6 genome: translation of phi 6 messenger RNAs transcribed in vitro. Mol Gen Genet. 1980;180(2):385–389. doi: 10.1007/BF00425852. [DOI] [PubMed] [Google Scholar]
  3. Emori Y., Iba H., Okada Y. Morphogenetic pathway of bacteriophage phi 6. A flow analysis of subviral and viral particles in infected cells. J Mol Biol. 1982 Jan 15;154(2):287–310. doi: 10.1016/0022-2836(82)90065-1. [DOI] [PubMed] [Google Scholar]
  4. Emori Y., Iba H., Okada Y. Semi-conservative transcription of double-stranded RNA catalyzed by bacteriophage phi 6 RNA polymerase. J Biochem. 1980 Dec;88(6):1569–1575. doi: 10.1093/oxfordjournals.jbchem.a133131. [DOI] [PubMed] [Google Scholar]
  5. Etten J. V., Lane L., Gonzalez C., Partridge J., Vidaver A. Comparative properties of bacteriophage phi6 and phi6 nucleocapsid. J Virol. 1976 May;18(2):652–658. doi: 10.1128/jvi.18.2.652-658.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Iba H., Nanno M., Okada Y. Identification and partial purification of a lytic enzyme in the bacteriophage phi 6 virion. FEBS Lett. 1979 Jul 15;103(2):234–237. doi: 10.1016/0014-5793(79)81334-4. [DOI] [PubMed] [Google Scholar]
  7. Iba H., Watanabe T., Emori Y., Okada Y. Three double-stranded RNA genome segments of bacteriophage phi 6 have homologous terminal sequences. FEBS Lett. 1982 May 3;141(1):111–115. doi: 10.1016/0014-5793(82)80027-6. [DOI] [PubMed] [Google Scholar]
  8. Kakitani H., Iba H., Okada Y. Penetration and partial uncoating of bacteriophage phi 6 particle. Virology. 1980 Mar;101(2):475–483. doi: 10.1016/0042-6822(80)90461-4. [DOI] [PubMed] [Google Scholar]
  9. Laskey R. A., Mills A. D. Quantitative film detection of 3H and 14C in polyacrylamide gels by fluorography. Eur J Biochem. 1975 Aug 15;56(2):335–341. doi: 10.1111/j.1432-1033.1975.tb02238.x. [DOI] [PubMed] [Google Scholar]
  10. Loening U. E. The fractionation of high-molecular-weight ribonucleic acid by polyacrylamide-gel electrophoresis. Biochem J. 1967 Jan;102(1):251–257. doi: 10.1042/bj1020251. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Semancik J. S., Vidaver A. K., Van Etten J. L. Characterization of segmented double-helical RNA from bacteriophage phi6. J Mol Biol. 1973 Aug 25;78(4):617–625. doi: 10.1016/0022-2836(73)90283-0. [DOI] [PubMed] [Google Scholar]
  12. Smith R. E., Furuichi Y. A unique class of compound, guanosine-nucleoside tetraphosphate G(5')pppp(5')N, synthesized during the in vitro transcription of cytoplasmic polyhedrosis virus of Bombyx mori. Structural determination and mechanism of formation. J Biol Chem. 1982 Jan 10;257(1):485–494. [PubMed] [Google Scholar]
  13. Ulmanen I., Broni B. A., Krug R. M. Role of two of the influenza virus core P proteins in recognizing cap 1 structures (m7GpppNm) on RNAs and in initiating viral RNA transcription. Proc Natl Acad Sci U S A. 1981 Dec;78(12):7355–7359. doi: 10.1073/pnas.78.12.7355. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Usala S. J., Brownstein B. H., Haselkorn R. Displacement of parental RNA strands during in vitro transcription by bacteriophage phi 6 nucleocapsids. Cell. 1980 Apr;19(4):855–862. doi: 10.1016/0092-8674(80)90076-8. [DOI] [PubMed] [Google Scholar]
  15. Van Etten J. L., Burbank D. E., Cuppels D. A., Lane L. C., Vidaver A. K. Semiconservative synthesis of single-stranded RNA by bacteriophage phi 6 RNA polymerase. J Virol. 1980 Feb;33(2):769–773. doi: 10.1128/jvi.33.2.769-773.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Van Etten J. L., Vidaver A. K., Koski R. K., Burnett J. P. Base composition and hybridization studies of the three double-stranded RNA segments of bacteriophage phi 6. J Virol. 1974 Jun;13(6):1254–1262. doi: 10.1128/jvi.13.6.1254-1262.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Yamakawa M., Furuichi Y., Nakashima K., LaFiandra A. J., Shatkin A. J. Excess synthesis of viral mRNA 5-terminal oligonucleotides by reovirus transcriptase. J Biol Chem. 1981 Jun 25;256(12):6507–6514. [PubMed] [Google Scholar]

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