Summary
Recent studies in the human visual cortex using diffusion weighted fMRI have suggested that the apparent water diffusion coefficient (ADC) decreases in contrast to earlier studies which consistently reported ADC increases during neuronal activation. The changes, in either case, are hypothesized to provide the ability to improve the spatial specificity of fMRI over conventional BOLD methods. Most recently, the ADC decreases have been suggested as originating from transient cell swelling caused by either shrinkage of the extracellular space or by some intracellular neuronal process which precedes the hemodynamic response. All of these studies have been conducted in humans and at lower magnetic fields, which can be limited by signal to noise ratios (SNR). The low SNR can lead to significant partial volume effects because of the lower spatial resolutions required to attain sufficient SNR in diffusion weighted images. Human studies also have the potential confound of motion. At high magnetic fields, and in animal model studies, these limitations are alleviated. At high fields, SNR increases, tissue signals are enhanced, and signal changes inside the blood are significantly reduced compared to lower fields. In this work, we were able to measure a small but significant ADC decrease in tissue areas in conjunction with brain activation in the cat visual cortex at 9.4 T when using highly diffusion weighted images (b > 1200 s/mm2) where the intravascular effects are minimal. When using low b-values, delayed increases in the tissue ADC during activation were observed. No significant changes in ADC were observed in surface areas containing mostly large vessels for any diffusion weighting. We did not observe any temporal differences in the highly diffusion weighted data compared to BOLD, however, in any case, although the changes may likely be vascular in nature, they are highly localized to the tissue areas.
Keywords: BOLD, Diffusion, fMRI, functional mapping, ADC
Introduction
Functional MRI BOLD (Blood oxygenation level dependent) signal monitors changes in neural activity in the brain via alterations in cerebral blood flow (CBF), blood volume (CBV) and oxygen consumption (CMRO2) 1–5. This is made possible because the BOLD contrast is sensitive to changes in the tissue concentration and the amount of paramagnetic deoxyhemoglobin which, in turn, reflects perturbations in CBF, CBV and/or CMRO2. It is well known that in most fMRI studies (especially at field’s ≤ 3T), the source of these signal changes are dominated by large draining veins, which can be up to several millimeters away from the actual site of neural activity 6–12. Recently, much attention has been given to diffusion weighted fMRI because of its potential to better localize with neuronal activity and to reflect changes of a non-vascular origin.
The apparent diffusion coefficient (ADC) 13 has been proposed to monitor water molecular motion using varying magnetic field gradients. Diffusion or intravoxel incoherent motion (IVIM) weighting 14 in MR images imposed by the application of bipolar gradients 15 can selectively attenuate signals from different flowing blood pools, as well as from extra-and intracellular tissue water undergoing diffusion. After changing the amount of diffusion weighting (b-value), the resulting MR signals can be fit to an exponential or multiple exponential functions resulting in an estimation of the ADC. Early studies 16,17 using diffusion weighted fMRI have suggested that ADC changes during neuronal activation. Furthermore, these changes were predicted to be more spatially correlated with neuronal activation due to the earlier onset of these changes relative to the vascular based BOLD signal 18 as well as distinctive spatial characteristics 19 relative to BOLD. These studies demonstrated repeatedly that the ADC increases during neuronal activation 18–24, and were ascribed mainly to the IVIM effect associated with the higher blood flow attained during the activated state. However, more recent studies, conducted in a much higher diffusion weighting regime, reported decreases 25,26 in apparent ADC with neuronal stimulation. Le Bihan and colleagues have attributed ADC changes observed with high diffusion sensitization to transient cell swelling caused by either a shrinking of the extracellular space or by some intracellular neuronal process which precedes the hemodynamic response 26. More recently, this result has been investigated by others 27,28, resulting in different findings and subsequent interpretations. Thus, the mechanism of diffusion changes and its polarity (increase or decrease) during activation, as observed via fMRI, is not well understood. The previous human studies, unlike animal studies, can be limited by: signal to noise ratios (SNR) (especially at lower magnetic fields), motion, and significant partial volume effects because of the lower spatial resolutions required for sufficient SNR in diffusion weighted images. Furthermore, signal changes in and around large veins are known to dominate the BOLD signal changes at lower fields. Because of these reasons, the replication, reliability, and general utility of these findings in human studies at lower fields (≤ 3T) are limited. At high magnetic fields, signal to noise ratios increase, tissue signals are enhanced, and signal changes inside the blood are significantly reduced compared to lower fields. Higher magnetic fields and/or animal models can allow for more reliable and spatially accurate investigations of the fundamental physiological mechanisms associated with neuronal activation. Signal changes in the diffusion weighted BOLD fMRI time course can result from either non-specific intravascular signals (i.e. when the blood T2 reduces in the presence of deoxyhemoglobin or because of a phase change between tissue and blood when blood occupies a large fraction of a voxel) or more localized extravascular effects, which at high fields using spin echoes reflects dynamic averaging of spins near “tissue” (i.e. small and capillary size vessels (see 29)), as a result of oxygenation, flow, or possibly diffusion related effects. In this work, we attempt to shed light on the apparent discrepancies in the literature on the origin of signal changes in the diffusion weighted fMRI time course using a high resolution cat model at 9.4 T.
Methods
Animal setup
Cats (n=3) were prepared as described previously 30,31. Briefly, the animals were initially anesthetized intramuscularly with a ketamine (10–25 mg/kg) and xylazine (2.5 mg/kg) cocktail. The animals were intubated and artificially ventilated with isoflurane anesthesia throughout the experiment (1% in a N2O:O2 mixture of 70:30). Blood pressure, end-tidal CO2 and body temperature were maintained at normal conditions. The animal’s eyes were refracted and focused on the stimulus using corrective contact lenses. The animal was placed in a cradle and restrained in a normal postural position using a custom-designed stereotaxic frame. Visual stimuli consisted of binocular high-contrast square-wave drifting and rotating gratings (0.15 cyc/deg, 2 cyc/s) for 20 s. In order to achieve a maximum amount of activity the drift direction of the gratings was reversed every second and every 2 s the orientation of the gratings was changed in increments of 36° so that a total of 360° of rotation was achieved by the end of a stimulation period.
MRI Methods
All MRI experiments were performed on a 9.4T/31cm (Oxford, UK) magnet equipped with a Varian console (Palo Alto, CA). A 1.4-cm diameter transmit and receive surface coil was used. A coronal slice perpendicular to area 18 (crossing at Horsley-Clark AP2) was used for the functional study (see Fig. 1a). Anatomic images were obtained using a T1-weighted 2D TurboFLASH 32 sequence. Functional images were obtained using diffusion weighted Hahn-spin-echo (HSE) BOLD sequences. For the HSE BOLD sequence a reduced FOV along the phase encode direction was applied using a selective refocusing pulse 33–37. This allowed us to reduce the number of segments needed for the high resolution images. HSE BOLD images were acquired with different amounts of diffusion weighting using Stejskal-Tanner (S-T) 15 gradients applied either simultaneously or separately along the 3 axes. Functional scans were acquired using b-values of: 1, 600, 1200, and 2400 s/mm2. Image parameters were: Data matrix = 32 × 128, single shot EPI, field of view (FOV) = 0.8 × 3.20 cm2. Slice thickness = 2 mm and TE/TR = 44ms /2 s. The in plane resolution was 250 × 250 µm2.
Figure 1.
Regions of interest of (ROIs) were selected in the tissue and surface vessel areas (green-vessel ROI, red-tissue ROI)) in a representative cat. Data analyses were done using all voxels included in these ROIs (scale bar = 1 mm).
Data Analysis
The MRI data were Fourier transformed and analyzed using the Stimulate software 38 and Matlab codes (The MathWorks, Inc.). A low pass (temporal) filter was used to remove high frequency noise; no spatial smoothing was applied. Functional time courses were generated by selecting all pixels (i.e. pixels were not excluded based on statistical thresholds of activation) within regions of interest (ROI) in the tissue areas as well as in the surface vessel areas in each cat (see Fig.1). Tissue ROIs were centered over the middle cortical layers and expected to primarily contain small vessel or capillary signals 31. Surface vessel ROIs were dominated by pial surface vessels. The stimulus evoked signal changes were calculated at each of the different diffusion weightings in each of the cats for the respective tissue and vessel ROIs. The measured changes were evaluated as a function of b-value.
Calculation of ADC
ADC can be determined by altering the amount of diffusion weighting, and thus the amount of signal attenuation in a spin echo image. The resulting signals can then be fit according to a mono- or bi-exponential decay function. Depending on the amount of diffusion weighting (i.e. b-value), the images would be sensitive to different parts of the vascular system. Increasing the b-value will result in a suppression of flowing spins beginning with the fastest moving (arterial & venous side) to, when extremely high b-values are reached, slower moving spins in smaller and smaller vessels possibly even near the tissue 39,40. In addition to selectively suppressing different pools of flowing spins, signals throughout the vascular system are modulated by phase shifts consequential to intravoxel incoherent motion 14. ADC and ADC changes were computed using the intravoxel incoherent motion model. The signal intensity for a given echo time in a diffusion weighted image can be described according to the Steskal-Tanner equation:
| [1] |
Where S is the signal intensity in the spin echo image, So is the intensity with no diffusion weighting, and diffusion weighting is referred to as the b-value described by: b (sec/mm2) = γ2g2δ2(Δ-δ/3). Where γ is the gyromagnetic ratio, g is the pulsed gradient amplitude, δ is the pulsed gradient duration, and Δ is the time between the leading edge of the applied gradients. ADC can be calculated from a minimum of 2 b-values according to equation 2:
| [2] |
Where b1 and b2 are different diffusion weightings and S (b1) or S (b2) represent the MR signal at the respective b-values. Initially, ADC changes were measured using data acquired from all of the different diffusion weightings; subsequently, ADC changes were calculated using only the high b-values (1200 & 2400 s/mm2) or the low b-values (1 & 600 s/mm2) in order to assess differences in observed ADC changes as they might depend on diffusion weighting.
Results
Statistically significant signal changes (ΔS/S) were observed in all 3 cats for spin echo BOLD weighted images at each of the different diffusion weightings as well as with minimal diffusion weighting (b=1 s/mm2). A representative series of activation maps from a single cat at the respective diffusion weightings is shown in figure 2. The corresponding background image is the actual diffusion weighted spin echo EPI image from each of the different diffusion weightings. The spatial nature of the functional maps changes as a function of b-value due to both the progressive loss in signal from increased diffusion weightings as well as the different sensitivities of the vascular tree to the applied diffusion gradients. At extremely high b-values the signals tend to be more localized to the gray matter. Note that fMRI activation detection or contrast to noise is reliable even at extremely high b-values of 2400 s/mm2.
Figure 2.
BOLD activation maps from different b-values overlaid on diffusion weighted spin echo EPI images from a representative cat.
As mentioned, the analysis of the temporal features of the activation was done using anatomically defined ROIs (see Figure 1) without any spatial biasing. Spatial biasing is routinely done by assuming hemodynamic models and imposing statistical thresholds to selectively choose voxels which behave according to this expected hemodynamic model. This is typically done to reduce the noise in the fMRI time series which is to be analyzed. We found in each cat, using an ROI analysis, a monotonic (~ 20%) decrease in stimulus evoked BOLD percent changes (ΔS/S) in the tissue areas when increasing the b-value from 1 to 1200 s/mm2 (see Fig.3b). This decrease is in good agreement with previous work 36,41. However, at the highest b-value (2400 s/mm2) an increase in the BOLD tissue signal changes (ΔS/S) is observed in all of the cats, to levels approaching that of the b=1 s/mm2 data. This finding is in agreement with the data reported previously by Le Bihan et al 26. In contrast, signal changes in the surface vessel ROI did not show any significant dependence on b-value; however, the mean signal change did tend to decrease (p < 0.2) monotonically with increasing b-values (see Fig 3c). It should be noted that the data from the surface vessel ROI were noisy due to the intrinsically low signal (due to the short T2 36, 41–43) inside the blood at this high magnetic field.
Figure 3.
Averaged BOLD time courses in the tissue at each of the b-values (a), and plotted on the right (b–c) are the normalized BOLD changes at each of the b-values for each of the cats (cat 1 (red), cat 2 (blue), and cat 3 (green); average (dashed)) for the tissue and surface vessel ROIs, respectively. In all 3 cats the BOLD signal in the tissue decreases as a function of b-value until the highest b-value is reached (2400 s/mm2) where the BOLD signal change recovers to a value similar to the lowest b-value (1 s/mm2). No significant changes as a function of b-value were observed in the vessel ROIs. (Green box in (a) indicates the stimulus)
Functional ADC (ΔADC/ADC) time courses in the tissue and vessel areas were calculated based on the signal levels (using equations 1–2) and changes from the different diffusion weighted images (Fig. 2) from each of the cats. In the tissue areas, when using a low b-value pair (1 & 600 s/mm2), small and delayed increases in the average ADC time course of all cats were observed (~0.30 %) (see Fig 4 - red). When using the high b-value pair (1200 & 2400 s/mm2) to calculate ADC, earlier and significant decreases (~−0.45 %) were observed following activation in the average ADC time courses (see Fig 4- blue). If all b-values are used, very small, insignificant changes in ADC were observed during activation (Fig. 4b). In the surface vessel ROIs, while noisy, the ADC changes (with either low or high b–values) were small, but did tend to increase during activation (p < 0.2). We did not observe any significant differences in the onset time between any of the diffusion weighted data compared to the BOLD (b=1 s/mm2) data. Note, however, that subtle differences in the onset time may be difficult to detect with limited temporal resolution (2 s) as used in this study. However, on average, there was a shift in the time to peak between the low b-value (peaking later) and the highest b-value (peaking earlier), resulting in differences in the total duration of the response.
Figure 4.
a) ADC calculated changes for low (1–600 s/mm2) and high (1200–2400 s/mm2) b-values, in the parenchyma, averaged over 3 cats, according to equations 1&2. b) ADC changes calculated for all b-values (1– 2400 s/mm2) (Green box indicates the stimulus).
Discussion
In this work, we investigated the dependence of stimulus evoked signal changes under the presence of low and high Stejskal-Tanner gradients (i.e., diffusion weighting) in a HSE BOLD sequence in the cat visual cortex during visual stimulation at 9.4 T. The study was conducted with high spatial resolution and allowed for a clear distinction between tissue regions, areas containing mainly capillary size vessels, versus the cortical surface, areas containing mainly large pial vessels. We found that the polarity of the observed ADC changes depend on the amount of diffusion weighting that is used. In the tissue ROI, during activation, an increase in ADC is observed if relatively low b-values (1– 600 s/mm2) are used to calculate ADC. In contrast, if higher (1200 – 2400 s/mm2) b-values are used to calculate ADC, the exact same pixels exhibit a decrease in ADC during activation.
In the literature, there are conflicting observations regarding changes associated with diffusion weighted fMRI following neuronal stimulation, which are accompanied by conflicting explanations regarding the physiological origin of these changes. We attempted to address some of these discrepancies in this study.
ADC changes during activation: Vascular or Neuronal
It has been reported that ADC changes exist and can be observed following sensory stimulation using diffusion weighted fMRI techniques 16,17. Initial reports 18–23 demonstrated increases (as high as 15%) in the ADC that correlated with an increase in brain activity. These studies were done using relatively low diffusion weightings (b < 500 s/ mm2) at magnetic fields ≤ 4T. The significance and utility of the observed ADC changes were investigated extensively and it was found that the spatial and temporal nature of the ADC changes during activation were significantly distinct from conventional BOLD signals 18–20. The ADC changes would consistently precede BOLD changes on the order of about 1 second. This is important because the BOLD signal at these field strengths originates mostly from the venous side and thus ADC changes, similar to arterial spin labeling methods (ASL), might increase the relative contribution of signals originating from arteries (or even capillaries), and ultimately provide an fMRI contrast mechanism with improved spatial localization of brain activation over conventional BOLD signals. More recently 25, 26, operating in a different, much higher, diffusion regime (maximum b-value of 2400 s/mm2 applied simultaneously in x, y, z directions), small decreases (~ 1%) in the ADC during brain activation were observed. At these high b-values it would be expected that signal changes originate solely from the extravascular space as the intravascular signal would be eliminated. The ADC decreases, similar to the increases, were found to precede the BOLD signals on the order of seconds. Le Bihan and colleagues attributed this finding to being cellular in nature. The changes were hypothesized to reflect neuronal activation induced cell swelling or membrane expansion. More specifically, it was recently suggested 26 that there was a small dilation of the slow water diffusing pool and with that a decrease in volume of the fast water diffusion pool.
In our data, more pronounced when averaging across cats (See Fig.3a), a difference in the time to peak of the response, not the onset time as demonstrated in the human studies, and a subsequent difference in the duration (width) of the response was observed (with the high b-value data being narrower and peaking sooner). Also, in contrast to the mentioned human studies, Miller et al 27 (a human study) did not observe any temporal differences between the diffusion weighted functional signal changes and the BOLD signal changes. In human studies (i.e.25,26), the signal to noise of the fMRI data is limited especially when employing high b-values and the observed changes/temporal differences are generally only visible when averaging across subjects and not in single studies as demonstrated here, making it difficult to quantify such subtle effects. Furthermore, statistical biasing/isolation of voxels is normally used in the analysis to identify pixels behaving similar to a predicted hemodynamic response model, which reduces the noise in the fMRI time series but also likely introduces spatial biases. In this work, no statistical thresholding was imposed, but rather ROI-based analyses were done which did not show any significant differences in onset times. An absence of temporal differences is important because it would suggest that 1) the observed signal changes might be vascular (not cellular) in nature and 2) if the temporal dynamics are similar to BOLD, the potentially vascular changes would originate from the capillaries or small vessels. However, whether the high diffusion response is regulated by neuronal or vascular processes, the change in diffusion weighting inherently changes the vascular contributions to the signal 14,15 (i.e. selectively reducing the signals from flowing blood) and likely introduces differences in the temporal features. In our data, when averaging across cats (See Fig.3a), a difference in the time to peak of the response, not the onset time, and therefore a subsequent difference in the duration (width) of the response was observed (with the high b-value data being narrower and peaking sooner). We do not believe that this finding is evidence for a neuronal nature to the response, as we do not see any significant differences in the onset time, while the differences in the evolution of the response could be explained by the different vascular sources present at the respective diffusion weightings and the subsequent temporal evolution of the different vascular components.
A more straightforward way to test the vascular nature of the signal changes, while avoiding the constraining SNR limited task of detecting significant subtle differences in timing, was done by Miller et al 27 using a hypercapnia model. Hypercapnia disentangles the vascular response from neuronal activity: it induces increases in blood flow while having a minor effect on neuronal activity. For that reason, if the observed diffusion weighted functional changes were neuronal in nature (i.e. not vascular), one would not expect to see ADC changes under hypercapnia conditions. Miller et al. found that the increases in signal changes with increasing diffusion weighting persisted under hypercapnia conditions, implicating a significant vascular nature to the response. However, the nature of a potential vascular response is unclear, considering there is likely to be a minimal amount of blood signal remaining at these extremely high b values. Finally, another study using the cat model at 9.4 T 28, did not observe any tissue related ADC changes during activation. The discrepancy could be easily explained by the parameters used; the maximum b-value used in that study was 800 s/mm2; here, the observed decreases in ADC in tissue areas were significant only when the high b-value pair (1200 & 2400 s/mm2) was used to calculate ADC. Also, a consistent finding between our study and 28 was that when the relative intravascular component increased either with shorter echo times 28 or lower b-values (this study) the subsequent observed ADC changes were increases, not decreases.
ADC increases versus decreases
Several studies25–27, in addition to this work (see Fig 3b), have reported similar findings of an increasing BOLD (ΔS/S) signal when monitoring functional signal changes under the presence of high diffusion weightings. The finding of a possible phase change in the diffusion weighted signal changes (i.e. ADC increase versus no change or decrease) appears to have some consistency between all the studies mentioned above as well as with this work. That is, at lower fields, shorter echo times1 or smaller diffusion weightings, where the intravascular component or the blood signal is expected to be larger, the observed changes in ADC, which correlate with brain activation, are increases; however, when the relative contribution of the intravascular signal is decreased either by going to higher fields and/or longer echo times or increasing the b-value, these ADC signal changes become minimal and subsequently exhibit (earlier) decreases during brain activation (see cartoon in Fig 5).
Figure 5.
Graphical illustration of the observed ADC changes consistent with our findings as well as previous reports on ADC changes during activation. Green represents the relative amount of extravascular compared to intravascular (red) signal contributing to the BOLD signal for a given TE, b-value and magnetic field. If the TE, diffusion weighting (b), or magnetic field (B0) (because of blood T2 changes) are changed, the relative amount of intravascular versus extravascular signal also changes and with that the observed ADC changes and the sign of those changes (vertical axis) also change.
This relative difference in the intravascular contributions to the data may explain why some studies reported increases, while yet others reported decreases, and why even some report no changes in the ADC during activation.
Our data indicate that the origin of this relative signal change increase at the high b-value and subsequent decrease in ADC during activation must be extravascular in nature as the intravascular component of the BOLD signal at 9.4 T coupled with such strong diffusion gradients, is negligible, while the increases at lower b-values may be the result of residual intravascular or blood related effects. Furthermore, to account for non-optimal directions of blood flow, where application of simultaneous S-T gradients may not suffice, we in addition ran experiments with S-T gradients applied non-simultaneously on each axis. These experiments resulted in similar findings. The finding at high b-values was observed in the tissue areas and absent in the vessel areas. Although originating in the tissue, we believe that a strong vascular contribution to this effect is more likely based on the lack of significant temporal differences coupled with the recent hypercapnia data 27. Such a mechanism, however, for example a CBV increase which might constrain tissue ADC, changing the extravascular BOLD signal, is not obvious and would be difficult to investigate. Irrespective of the physiological mechanism associated with the ADC decreases linked to brain activation, we observed this response only in the tissue areas, using a high field, high resolution cat model coupled with extremely high b-values - implicating a highly spatially specific nature to the signal changes. This high specificity, however, may not necessarily remain when relatively larger intravascular signal persist and ADC increases are observed.
Our study was not well suited to address small (< 2s) temporal differences between diffusion weighted fMRI and BOLD time courses. This would require higher temporal resolution while maintaining a sufficient amount of sensitivity to detect such subtle changes in timing without imposing statistical biases. Therefore, we cannot say per se whether the origin of the ADC decreases are vascular or neuronal in nature, only that if they are vascular they are extravascular and they are likely localized to the tissue areas while the observed ADC increases appear to be correlated with the relative amount of intravascular signal present and likely less localized to the tissue areas.
Finally, one other scenario, which we have not discussed as a possible explanation for the observed ADC changes, is the interaction of 2 gradient fields. That is, the susceptibility induced gradient field during activation interacting with the diffusion gradients. This effect may be significant only when the diffusion gradients are extremely large as they are at high b-values. Further studies are needed to investigate whether these effects are responsible for the observed ADC changes at high b-values.
Conclusions
In this work, we were able to measure a small but significant ADC decrease in tissue areas in conjunction with brain activation in the cat visual cortex at 9.4 T when using highly diffusion weighted images (b > 1200 s/mm2) where the intravascular effects are minimal. When using low b-values, where the intravascular effects are small (10 – 20 %) but persist, small delayed increases in the ADC during activation were observed.
Acknowledgements
The Authors would like to thank Drs. Peter Andersen and Gregor Adriany for hardware support. Work supported in part by the National Institutes of Health National Institutes of Health (grants P41RR08079, R01 MH070800, R01 EB000331, P30 NS057091), the W.M. Keck Foundation, and MIND institute.
Footnotes
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Shorter echo times will in general reduce the relative amount of intravascular signal (see simulation in Duong et al., 2003) except at 1.5 T where the tissue T2 is shorter than the blood T2
References
- 1.Ogawa S, Lee T-M. Magnetic resonance imaging of blood vessels at high fields: In vivo and in vitro measurements and image simulation. Magn Reson Med. 1990;16:9–18. doi: 10.1002/mrm.1910160103. [DOI] [PubMed] [Google Scholar]
- 2.Ogawa S, Lee T-M, Kay AR, Tank DW. Brain magnetic resonance imaging with contrast dependent on blood oxygenation. Proc Natl Acad Sci USA. 1990;87:9868–9872. doi: 10.1073/pnas.87.24.9868. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Ogawa S, Lee T-M, Nayak AS, Glynn P. Oxygenation-sensitive contrast in magnetic resonance image of rodent brain at high magnetic fields. Magn Reson Med. 1990;14:68–78. doi: 10.1002/mrm.1910140108. [DOI] [PubMed] [Google Scholar]
- 4.Ogawa S, Tank DW, Menon R, et al. Intrinsic signal changes accompanying sensory stimulation: Functional brain mapping with magnetic resonance imaging. Proc Natl Acad Sci USA. 1992;89:5951–5955. doi: 10.1073/pnas.89.13.5951. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Kwong KK, Belliveau JW, Chesler DA, et al. Dynamic magnetic resonance imaging of human brain activity during primary sensory stimulation. Proc Natl Acad Sci USA. 1992;89:5675–5679. doi: 10.1073/pnas.89.12.5675. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Duyn JH, Moonen CTW, Yperen GH, Boer RW, Luyten PR. Inflow versus deoxyhemoglobin effects in BOLD functional MRI using gradient echoes at 1.5T. NMR in Biomed. 1994;7:83–88. doi: 10.1002/nbm.1940070113. [DOI] [PubMed] [Google Scholar]
- 7.Frahm J, Merboldt KD, Hanicke W, Kleinschmidt A, Boecker H. Brain or vein-oxygenation or flow? On signal physiology in functional MRI of human brain activation. NMR in Biomed. 1994;7:45–53. doi: 10.1002/nbm.1940070108. [DOI] [PubMed] [Google Scholar]
- 8.Kim S-G, Hendrich K, Hu X, Merkle H, Ugurbil K. Potential pitfalls of functional MRI using conventional gradient-recalled echo techniques. NMR in Biomed. 1994;7(12):69–74. doi: 10.1002/nbm.1940070111. [DOI] [PubMed] [Google Scholar]
- 9.Lai S, Hopkins AL, Haacke EM, et al. Identification of vascular structures as a major source of signal contrast in high resolution 2D and 3D functional activation imaging of the motor cortex at 1.5 T: Preliminary results. Magn Reson Med. 1993;30:387–392. doi: 10.1002/mrm.1910300318. [DOI] [PubMed] [Google Scholar]
- 10.Lee AT, Glover GH, Meyer GH. Discrimination of large venous vessels in time-course spiral blood-oxygen-level-dependent magnetic resonance functional neuroimaging. Magn Reson Med. 1995;33:745–754. doi: 10.1002/mrm.1910330602. [DOI] [PubMed] [Google Scholar]
- 11.Menon RS, Ogawa S, Tank DW, Ugurbil K. 4 Tesla gradient recalled echo characteristics of photic stimulation-induced signal changes in the human primary visual cortex. Magn Reson Med. 1993;30:380–386. doi: 10.1002/mrm.1910300317. [DOI] [PubMed] [Google Scholar]
- 12.Segebarth C, Belle V, Delon C, et al. Functional MRI of the human brain: Predominance of signals from extracerebral veins. NeuroReport. 1994;5:813–816. doi: 10.1097/00001756-199403000-00019. [DOI] [PubMed] [Google Scholar]
- 13.Le Bihan D, Breton E, Lallemand D, Grenier P, Cabanis E, Laval-Jeantet M. MR imaging of intravoxel incoherent motions: application to diffusion and perfusion in neurologic disorders. Radiology. 1986;161(2):401–407. doi: 10.1148/radiology.161.2.3763909. [DOI] [PubMed] [Google Scholar]
- 14.Le Bihan D, Breton E, Lallemand D, Aubin ML, Vignaud J, Laval-Jeantet M. Separation of diffusion and perfusion in intravoxel incoherent motion MR imaging. Radiology. 1988;168(2):497–505. doi: 10.1148/radiology.168.2.3393671. [DOI] [PubMed] [Google Scholar]
- 15.Stejskal E, Tanner J. Spin Diffusion Measurments: Spin Echoes in the presence of a time-dependent field gradient. J Chem Phys. 1965;42:288–292. [Google Scholar]
- 16.Darquie A, Clark CA, Van de Moortele PF, Le Bihan D. Comparison of BOLD and IVIM event-related fMRI. Philadelphia: 1999. p. 447. [Google Scholar]
- 17.Song AW, Popp CA. fMRI using ADC contrast. Sydney: 1998. p. 1438. [Google Scholar]
- 18.Gangstead SL, Song AW. On the timing characteristics of the apparent diffusion coefficient contrast in fMRI. Magn Reson Med. 2002;48(2):385–388. doi: 10.1002/mrm.10189. [DOI] [PubMed] [Google Scholar]
- 19.Song AW, Gangstead SL. The spatial and temporal characteristics of the apparent-diffusion-coefficient-dependent fMRI signal changes during visual stimulation. J Neural Eng. 2004;1(1):32–38. doi: 10.1088/1741-2560/1/1/005. [DOI] [PubMed] [Google Scholar]
- 20.Harshbarger TB, Song AW. B factor dependence of the temporal characteristics of brain activation using dynamic apparent diffusion coefficient contrast. Magn Reson Med. 2004;52(6):1432–1437. doi: 10.1002/mrm.20293. [DOI] [PubMed] [Google Scholar]
- 21.Song AW, Harshbarger T, Li T, et al. Functional activation using apparent diffusion coefficient-dependent contrast allows better spatial localization to the neuronal activity: evidence using diffusion tensor imaging and fiber tracking. Neuroimage. 2003;20(2):955–961. doi: 10.1016/S1053-8119(03)00292-1. [DOI] [PubMed] [Google Scholar]
- 22.Song AW, Li T. Improved spatial localization based on flow-moment-nulled and intra-voxel incoherent motion-weighted fMRI. NMR Biomed. 2003;16(3):137–143. doi: 10.1002/nbm.819. [DOI] [PubMed] [Google Scholar]
- 23.Song AW, Woldorff MG, Gangstead S, Mangun GR, McCarthy G. Enhanced spatial localization of neuronal activation using simultaneous apparent-diffusioncoefficient and blood-oxygenation functional magnetic resonance imaging. Neuroimage. 2002;17(2):742–750. [PubMed] [Google Scholar]
- 24.Turner R. How much cortex can a vein drain? Downstream dilution of activationrelated cerebral blood oxygenation changes. Neuroimage. 2002;16(4):1062–1067. doi: 10.1006/nimg.2002.1082. [DOI] [PubMed] [Google Scholar]
- 25.Darquie A, Poline JB, Poupon C, Saint-Jalmes H, Le Bihan D. Transient decrease in water diffusion observed in human occipital cortex during visual stimulation. Proc Natl Acad Sci U S A. 2001;98(16):9391–9395. doi: 10.1073/pnas.151125698. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Le Bihan D, Urayama S, Aso T, Hanakawa T, Fukuyama H. Direct and fast detection of neuronal activation in the human brain with diffusion MRI. Proc Natl Acad Sci U S A. 2006;103(21):8263–8268. doi: 10.1073/pnas.0600644103. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Miller KL, Bulte DP, Devlin H, et al. Evidence for a vascular component in the diffusion fMRI signal: a hypercapnia study. Berlin: 2007. p. 24. [Google Scholar]
- 28.Jin T, Zhao F, Kim SG. Sources of functional apparent diffusion coefficient changes investigated by diffusion-weighted spin-echo fMRI. Magn Reson Med. 2006;56(6):1283–1292. doi: 10.1002/mrm.21074. [DOI] [PubMed] [Google Scholar]
- 29.Ugurbil K, Chen W, Harel N, et al. Brain Function, Magnetic Resonance Imaging of. In: Akay M, editor. Wiley Encyclopedia of Biomedical Engineering. Volume 1. Hoboken: Hoboken: John Wiley & Sons, Inc; 2006. pp. 647–668. [Google Scholar]
- 30.Harel N, Lee SP, Nagaoka T, Kim DS, Kim S-G. Origin of negative blood oxygenation level-dependent fMRI signals. J Cereb Blood Flow Metab. 2002;22(8):908–917. doi: 10.1097/00004647-200208000-00002. [DOI] [PubMed] [Google Scholar]
- 31.Harel N, Lin J, Moeller S, Ugurbil K, Yacoub E. Combined imaging-histological study of cortical laminar specificity of fMRI signals. Neuroimage. 2006;29(3):879–887. doi: 10.1016/j.neuroimage.2005.08.016. [DOI] [PubMed] [Google Scholar]
- 32.Haase A, Frahm J, Matthaei D, Hanicke W, Merboldt K-D. FLASH Imaging: Rapid NMR Imaging Using Low Flip Angle Pulses. J Magn Reson. 1986;67:258–266. doi: 10.1016/j.jmr.2011.09.021. [DOI] [PubMed] [Google Scholar]
- 33.Duong TQ, Yacoub E, Adriany G, et al. High-resolution, spin-echo BOLD, and CBF fMRI at 4 and 7 T. Magn Reson Med. 2002;48(4):589–593. doi: 10.1002/mrm.10252. [DOI] [PubMed] [Google Scholar]
- 34.Feinberg D, Hoenninger J, Crooks L, Kaufman L, Watts J, Arakawa M. Inner volume MR imaging: technical concepts and their application. Radiology. 1985;156:743–747. doi: 10.1148/radiology.156.3.4023236. [DOI] [PubMed] [Google Scholar]
- 35.Turner R, von Kienlin M, Moonen C, van Zijl P. Single-shot Localized echo-planar imaging (STEAM-EPI) at 4.7 Tesla. Magn Reson Med. 1990;14:401–408. doi: 10.1002/mrm.1910140225. [DOI] [PubMed] [Google Scholar]
- 36.Yacoub E, Duong TQ, Van De Moortele PF, et al. Spin-echo fMRI in humans using high spatial resolutions and high magnetic fields. Magn Reson Med. 2003;49(4):655–664. doi: 10.1002/mrm.10433. [DOI] [PubMed] [Google Scholar]
- 37.Yang Y, Mattay V, Weinberger D, Frank J. Localized Echo-volume Imaging-Methods for functional MRI. J Magn Reson Imag. 1997;7:371–375. doi: 10.1002/jmri.1880070220. [DOI] [PubMed] [Google Scholar]
- 38.Strupp JP. Stimulate: A GUI based fMRI analysis software package. NeuroImage. 1996;3:S607. [Google Scholar]
- 39.Boxerman JL, Bandettini PA, Kwong KK, et al. The Intravascular contribution to fMRI signal changes: Monte Carlo modeling and diffusion-weighted studies in vivo. Magn Reson Med. 1995;34(1):4–10. doi: 10.1002/mrm.1910340103. [DOI] [PubMed] [Google Scholar]
- 40.Song AW, Wong EC, Tan SG, Hyde JS. Diffusion weighted fMRI at 1.5 T. Magn Reson Med. 1996;35(2):155–158. doi: 10.1002/mrm.1910350204. [DOI] [PubMed] [Google Scholar]
- 41.Duong TQ, Yacoub E, Adriany G, Hu X, Ugurbil K, Kim SG. Microvascular BOLD contribution at 4 and 7 T in the human brain: gradient-echo and spin-echo fMRI with suppression of blood effects. Magn Reson Med. 2003;49(6):1019–1027. doi: 10.1002/mrm.10472. [DOI] [PubMed] [Google Scholar]
- 42.Lee S-P, Silva A, Ugurbil K, Kim S-G. Diffusion-Weighted Spin-Echo fMRI at 9.4T: Microvascular/Tissue Contribution to BOLD signal changes. Magn Reson Med. 1999;42:919–928. doi: 10.1002/(sici)1522-2594(199911)42:5<919::aid-mrm12>3.0.co;2-8. [DOI] [PubMed] [Google Scholar]
- 43.Yacoub E, Shmuel A, Pfeuffer J, et al. Imaging brain function in humans at 7 Tesla. Magn Reson Med. 2001;45(4):588–594. doi: 10.1002/mrm.1080. [DOI] [PubMed] [Google Scholar]





