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Journal of Nematology logoLink to Journal of Nematology
. 2008 Jun;40(2):127–137.

Molecular Phylogeny of Geographical Isolates of Bursaphelenchus xylophilus: Implications on the Origin and Spread of this Species in China and Worldwide

Keyun Zhang 1,2, Hui Liu 1,2, Jie Sun 1, Jingrui Liu 1,2, Kan Fei 1,2, Chongxing Zhang 1, Mingxu Xu 1, Jing Sun 1, Xiyuan Ma 1, Ren Lai 1,3, Yidong Wu 2, Maosong Lin 2
PMCID: PMC2586533  PMID: 19259529

Abstract

The genetic diversity and phylogeny of 26 isolates of Bursaphelenchus xylophilus from China, Japan, Portugal and North America were investigated based on the D2/3 domain of 28S rDNA, nuclear ribosomal Internal Transcribed Spacer (ITS) sequences, and random amplified polymorphic DNA (RAPD) analysis. The genetic diversity analysis showed that the D2/3 domain of 28S rDNA of isolates of B. xylophilus from China, Portugal, Japan and the US were identical and differed at one to three nucleotides compared to those from Canada. ITS sequences of isolates from China and Portugal were the same; they differed at one or two nucleotides compared to those of Japanese isolates and at four and 23 nucleotides compared to those from the US and Canada, respectively. The phylogenetic analysis indicated that Chinese isolates share a common ancestor with one of the two Japanese clades and that the Canadian isolates form a sister group of the clade comprised of isolates from China, Portugal, Japan, and the US. The relationship between Japanese isolates and those from China was closer than with the American isolates. The Canadian isolates were the basal group of B. xylophilus. This suggests that B. xylophilus originated in North America and that the B. xylophilus that occurs in China could have been first introduced from Japan. Further analysis based on RAPD analysis revealed that the relationship among isolates from Guangdong, Zhejiang, Shandong, Anhui provinces and Nanjing was the closest, which suggests that pine wilt disease in these Chinese locales was probably dispersed from Nanjing, where this disease first occurred in China.

Keywords: Bursaphelenchus xylophilus, ITS, phylogeny, pinewood nematode, RAPD, systematics, D2/3 regions of 28S rDNA


Bursaphelenchus xylophilus (Steiner & Buhrer, 1934) Nickle, 1970, the causal agent of pine wilt disease (PWD) (Mamiya, 1984), is one of the most important invasive organisms worldwide and has devastated pine forests in Eastern Asia (Kiyohara and Tokushige, 1971; Yang and Wang, 1988; Chio et al., 2006). It is believed that B. xylophilus is the greatest threat to pine forests of some countries in Europe and the southern hemisphere (Dwinell, 1997; Webster, 1998; Mota et al., 1999; Matsunaga and Togashi, 2004). Bursaphelenchus xylophilus was first recorded in Japan in 1905 and was thought to be native to North America (Yano, 1913; Dropkin and Foudin, 1979; Knowles et al., 1983; Dwinell, 1993; Kanzaki and Futai, 2002). The dispersal of this nematode from one continent to another is thought to occur by transportation of infested logs, packing boards and wood chips (Evans et al., 1996; Dwinell, 1997). To date, B. xylophilus has been reported in Japan, the US, Canada, China, Mexico, South Korea and Portugal (Yano, 1913; Dropkin and Foudin, 1979; Cheng et al., 1983; Knowles et al., 1983; Yi et al., 1989; Dwinell, 1993; Mota et al., 1999). The first occurrence of B. xylophilus in China was reported in 1982 in the Sun-Yat-Sen Mausoleum Landscapes of Nanjing (Cheng et al., 1983). Later, extensive surveys revealed the widespread occurrence of the pine wood nematode throughout the county of Nanjing. Currently, this nematode has been found in 94 areas of nine provinces in China (China National Forestry Department Announcement, 2006). Since B. xylophilus was placed on the list of quarantined organisms of China, this nematode has been often detected by Chinese inspectors in imported wooden packing boxes from Japan, Canada, the US and other epidemic-stricken areas (Xu et al., 1995; Du et al., 1999; Li, 2005). Bursaphelenchus xylophilus has been also detected in native Chinese wooden packing boxes (Yang et al., 2004). Phylogenetic and biogeographic investigation of these isolates of B. xylophilus is therefore important to understand the origin and spread of this species in China and worldwide.

It has been demonstrated that the 28S rRNA gene and nuclear ribosomal DNA containing the first internal-transcribed spacer (ITS1), 5.8S rRNA and second internal transcribed spacer (ITS2) regions are informative for molecular diagnostics of nematodes and in the phylogenetic relationship analyses between nema-todes from population to class level (Adams et al., 1998; Kampfer et al., 1998; Iwahori et al., 1998; Beckenbach et al., 1999; De Giorgi et al., 2002; Wang et al., 2005; Nadler et al., 2006). As a fast and sensitive molecular marker, random amplified polymorphic DNA (RAPD) has been widely used to explore nematode relationships at inter and intra-specific levels (Williams et al., 1990; Guirao et al., 1995; Da Conceição et al., 2003; Wu et al., 2005; Vieira et al., 2007). These three molecular markers have been used to study the genetic variability within and among species of the genus Bursaphelenchus or as a molecular identification tool for B. xylophilus (Mota et al., 1999; Beckenbach et al., 1999; Kanzaki and Futai, 2002; Zheng et al., 2003; Metge and Burger-meister, 2005; Wu et al., 2005; Wang et al., 2005; Zhang et al., 2006; Vieira et al., 2007). However, there is no report that combines the use of the three markers for the phylogenetic analysis of geographical isolates of B. xylophilus from different countries. In this study, the D2/3 region of 28S rRNA gene, ITS region sequences and RAPD data were used to investigate the genetic diversity and phylogenetic affinities of different geographical isolates of B. xylophilus from China, Japan, the US, Canada and Portugal in order to provide molecular evidence to understand the origin and spread of this nematode in China and worldwide.

Materials and Methods

Sampling: A total of 26 isolates of B. xylophilus were studied, including nine from five provinces of China, eight from Japan, four from Portugal, two from the US and three from Canada. Three isolates of B. mucronatus were used as out-group. Twenty-five new sequences were generated in this study. The material from which these new sequences were obtained is stored as voucher specimens in Prof. Maosong Lin's lab in Nanjing Agricultural University. All other sequences used in this study were obtained from GenBank. Nematode isolate codes, sources and GenBank accession numbers appear in Table 1.

Table 1.

Codes, sources, and accession numbers for the taxa used in this study.

graphic file with name 127tbl1.jpg

DNA extraction: DNA from mixed life stages was extracted according to the method described by Harmey and Harmey (1993) and used as template for RAPD amplification. Nematode pellets were ground in liquid nitrogen to a fine powder. Six volumes of extraction buffer (200 mM NaCl, 5% SDS, 2 mg/ml Proteinase K, 50 mM EDTA, 100 mM Tris-Cl, pH 8.0) were added, and the mixture was incubated at 55°C for 60 min with occasional mixing. The DNA was extracted once with an equal volume of phenol and twice with an equal volume of chloroform:isoamyl alcohol (24:1). The DNA was precipitated by adding 2.5 volumes of absolute ethanol followed by centrifugation, then resuspended in TE (10 mM Tris, 1mM EDTA, pH8.0) and stored at −70°C.

DNA extracted from one individual nematode was used for 28S rDNA and ITS amplification (Joyce et al., 1994). A single nematode was placed on a 70% ethanol swabbed microscope slide in 10 μl of worm lysis buffer (50 mM KCl, 10 mM Tris pH 8.3, 2.5 mM MgCl2, 0.45% NP40, 0.45 Tween 20, 0.01% gelatin and 60 μg/ml proteinase K). NP40 and Tween 20 (Amresco) detergents were used to aid in the degradation of the nematode proteins. The nematode was cut in half, and the pieces in the lysis buffer were transferred to a sterile 0.5 ml microcentrifuge tube on ice. The tubes containing worm lysates were frozen at −80°C for 10 min and then incubated at 65°C for 1 hr, followed by 10 min at 95°C to inactivate the proteinase K. The lysates were cooled on ice and centrifuged at 12,000g for 2 min, and 2.5 μl of the supernatant was used in the PCR reaction. It was important not to add too much of the debris at the bottom of the tube after centrifugation as this could inhibit the Taq polymerase (Hominick et al., 1997).

PCR amplification and sequencing: Sequences of the partial 28S rDNA, the ITS region of the ribosomal DNA and RAPD data of pinewood nematode were used for the genetic diversity and phylogenetic analyses in this study. The primers used for amplification of the 28S rRNA gene fragment were designed by Qiu et al. (2005), corresponding to nucleotide positions 2,987–3,528 of the rDNA tandem repeat of C. elegans (Ellis et al., 1986). The 28S rDNA primers were 5′-CGA TAG CGA ACA AGT ACC GAG AG-3′ (forward primer) and 5′-CCT GCT CAG GCA TAG TTC ACC ATC-3′ (reverse primer). The forward primer is located upstream of the D2 region, and the reverse primer is located downstream of the D3 region, based on the secondary structure model of C. elegans 28S rRNA (Ellis et al., 1986). PCR amplification was conducted in a 50 μl PCR mixture containing 3 μl of 25 mM MgCl2, 4 μl of 2.5 mM dNTPs, 1 μl of 5 mM forward and reverse primers, respectively, 0.5 μl of Taq polymerase, 33 μl of double-distilled water and 2.5 μl DNA. All PCR reactions were conducted in a Px2 Thermal Cycler (Thermo Electron Co.), and the following cycling profile was used: 1 cycle at 94°C for 3 min, followed by 40 cycles of 94°C for 1 min, 48°C for 1 min, and 72°C for 2 min; the last step was 72°C for 10 min. Two 5′ primers for the amplification of ITS were designed by our lab based on reported ITS sequences of B. xylophilus and related nematodes from GenBank. The sequences are 5′-TTG ATT ACG TCCC TGC CCT TT-3′ and 5′-TTT CAC TCG CCG TTA CTA AGG -3′. The reverse primer was reported by Vrain et al. (1992). The PCR reaction parameters are the same as described above for 28S rDNA amplification. The PCR products were sequenced by Invitrogen Corporation (Shanghai, China).

Forty oligonucleotide decamer primers were used for RAPD amplification, 11 of which amplified distinct and reproducible DNA bands (Table 2). PCR amplifica-tion was performed using 25 ng of genomic DNA in a standard 10 μl PCR mixture (500 mM KCl, 100 mM Tris-HCl, 3.0 mM MgCl2, 0.1% gelatin (w/v), 1% Triton x-100, 200–400 μM dNTP and 10 nM primer) under the following thermal cycling program: 95°C for 4 min, 35 cycles of 94°C for 30 sec, 37°C for 50 sec and 72°C for 2 min, with a final extension step of 72°C for 10 min.

Table 2.

RAPD-PCR primer sequences and amplified bands among Bursaphelenchus xylophilus isolates.

graphic file with name 127tbl2.jpg

Phylogenetic analysis: Sequences were assembled with Sequencing Analysis 3.0 and aligned with CLUSTAL X (Thompson et al., 1997), initially under the default alignment parameters. Molecular phylogenetic relationships between isolates were reconstructed by Bayesian inference (BI), maximum parsimony (MP) and neighbor-joining methods (NJ). Bayesian phylogenetic reconstruction was performed by using MrBayes 3.0b4 (Huelsenbeck and Ronquist, 2001). The model that best fitted the data was identified by GTR + G model test using the program MrModeltest 2.0 (Nylander, 2004). Four cold Metropolis-coupled Markov chains Monte Carlo (MCMCMC) for 10,000,000 generations were run, and one tree was retained every 100 generations and a burn-in of 2,000 generations (Huelsenbeck and Ronquist, 2001). Parsimony analysis was performed via the close-neighbor-interchange (CNI) searching algorithm of MEGA 4 (Tamura et al., 2007) with uniform (standard parsimony) weighing methods, using all sites, and random addition trees. Character states (nucleotides) were specified as unordered. MEGA 4 was also used for NJ analysis. Relative support of clades in the analyses was assessed in a bootstrap analysis (Felsenstein, 1985) with 1,000 replicates. Bursaphelenchus mucronatus was used as out-group.

The distinct RAPD products of each primer were amplified and run electrophoretically twice to make sure that no bands were artifacts. For RAPD data analysis, the presence or absence of DNA fragments was visually scored for all isolates. A data matrix of “1” and “0” was constructed based on the presence or absence of each RAPD marker. The resulting matrix was used as input data to MEGA 4 and NTSYSpc 2.1 (Rohlf, 2000) to conduct phylogenetic trees by UPGMA with P-distance model and with similarity model in the two kinds of software packages, respectively.

Genetic diversity and isolate differentiation analysis were calculated using Software MEGA 4. Genetic differentiation between different geographical isolates was assessed by comparing the number of pairwise differences among those isolates.

Results

Sequence statistics: 28S rDNA sequences of 12 isolates of B. xylophilus and closely related species B. mucronatus were new to this study. ITS sequences of 10 isolates of B. xylophilus from China, Japan, the US and Canada were newly determined. The other sequences were obtained from GenBank. The GenBank accession numbers of those sequences are listed in Table 1. All the 28S rDNA sequences and ITS regions of the ribosomal DNA obtained were 519 to 638 bp and 784 to 785 bp long, respectively. Alignment of partial 28S rDNA sequences yielded a consensus length of 519 bp, of which 20 were variable and eight were parsimony-informative. The ITS region of the ribosomal DNA of B. xylophilus was 784 bp in length, of which 308 bp was ITS1 and 316bp was ITS2. The alignments of ITS regions were 813 bp, of which 106 sites were variable and six sites were parsimony-informative.

RAPD: Of 40 random primers, 11 primers producing clear and reproducible banding patterns with all isolates were selected as RAPD molecular markers. These markers generated a unique set of products ranging from 200 bp to 1,600 bp. Statistical data showed a total of 122 fragments were produced by the 11 primers, and 73 segments showed polymorphism (Table 2).

Genetic diversity: The D2/3 domain and ITS region nucleotide sequences of the isolates from China were identical (Table 3). The nucleotide sequences of the D2/3 domain of 28S rDNA of isolates from Japan and the US were the same as those of isolates from China, and isolates from these countries are termed GroupCPJU. The D2/3 domain of GroupCPJU was one base different from those of isolates from Canada (Table 3). ITS region sequence analysis showed that genetic diversity was significant among geographical isolates from different countries, but not significant among Chinese isolates (Table 4). ITS sequences of isolates from China and Portugal were identical and composed GroupCP. Japanese isolates of B. xylophilus were divided into two groups, JapancladI and JapancladII, based on ITS sequences. JapancladI comprised BxJIW (Japan isolate from Iwate) and BxJ1, a Japanese isolate detected by Customs of Nanjing Entry-Exit Inspection and Quarantine Bureau in packing boards from Japan. The other Japanese isolates formed JapancladII. GroupCP was one and two bases different from JapancladI and JapancladII, respectively, in ITS sequences, while they were four and 23 bases different from US and Canadian isolates, respectively, in ITS sequences (Table 4). RAPD analysis revealed that genetic distances among Chinese isolates ranged from 0.066 to 0.262, and no correlation with geographical origin was found (Table 5).

Table 3.

Genetic distances among Bursaphelenchus xylophilus and B. mucronatus groups based on 28S rDNA sequence data.

graphic file with name 127tbl3.jpg

Table 4.

Genetic distances among Bursaphelenchus xylophilus and B. mucronatus groups based on ITS sequence data.

graphic file with name 127tbl4.jpg

Table 5.

Genetic distances among Bursaphelenchus xylophilus and B. mucronatus groups based on RAPD-PCR analysis.

graphic file with name 127tbl5.jpg

Phylogenetic relationships among isolates of B. xylophilus: 28S rDNA phylogenetic trees were constructed using MP and NJ methods. The two phylogenetic trees based on the D2/3 domain of 28S rDNA showed that all the isolates of B. xylophilus formed a well supported monophyletic clade (≥97% bootstrap values), in which the B. xylophilus isolate BxCA188 collected from Quebec, Canada, was the basal clade of B. xylophilus (Fig. 1A,B). The two US isolates clustered together with the Asian and Portuguese isolates sharing the same D2/3 domain sequences and comprised GroupCPJU, which was the sister group of one of the other two Canadian isolates (Fig. 1). Three BI, MP and NJ phylogenetic trees based on ITS sequences support that Chinese and Portuguese (GroupCP) and Japanese and US isolates composed a monophyletic clade with high bayesian posterior probability and bootstrap values (0.98, 98% and 96%, respectively) and that the isolate BxCanada from Canada was the basal isolate of B. xylophilus (Fig. 2). Japanese isolates were split into two non-sister groups, JapancladI and JapancladII. The closer relationship between GroupCP (Chinese and Portuguese isolates) and JapancladI was suggested with high bayesian posterior probability and bootstrap values (1.00, 83% and 80%, respectively) (Fig. 2). The two US isolates formed the sister group ([GroupCP + JapancladI] + JapancladII), which was strongly supported with high bootstrap values and bayesian posterior probability (0.98, 98% and 96%, respectively) (Fig. 2). The results were in accordance with those based on 28S rDNA, both supporting a closer relationship between isolates of B. xylophilus from China, Japan and the US, which provides significant hints to the origin and spread of the pine wilt disease caused by B. xylophilus worldwide (Fig. 3).

Fig. 1.

Fig. 1

Phylogenetic trees based on D2/3 of 28S rDNA sequences of Bursaphelenchus xylophilus. The numbers above nodes denote bootstrap values. A: Neighbor-joining tree, B: Maximum Parsimony tree.

Fig. 2.

Fig. 2

Phylogenetic trees based on ITS sequences of Bursaphelenchus xylophilus. The numbers in the figure denote bootstrap values. A: Bayes interference tree, B: Maximum Parsimony/Neighbor-joining tree.

Fig. 3.

Fig. 3

Possible routes for spread of Bursaphelenchus xylophilus based on D2/3 of 28S rDNA and ITS sequence data analysis. The arrows denote possible dispersal directions.

Data analysis based on RAPD: To overcome the disadvantage of reproducibility of RAPD, only the 11 primers that produced consistent amplification products were selected from the 40 random primers by the optimal RAPD-PCR system developed in our previous study (Zhang et al., 2006). The 11 primers produced a total of 122 fragments, 73 of which were polymorphic. RAPD analysis revealed that genetic diversity was distinct among different isolates of B. xylophilus (Tables 5,6). The average genetic variation between Chinese and Japanese isolates was significantly higher than the average genetic distance among Chinese isolates (Table 6). The genetic distance among isolates of B. xylophilus from China was variable (from 0.066 to 0.262, Table 5). The smallest genetic distances were between isolate BxCNJ1 from Sun Yat-sen's tomb of Nanjing and BxCZD from Daishan, Zhejiang province, and between BxCNJ2 from Sun Yat-sen's tomb of Nanjing and BxCAS from south of Anhui province. The greatest genetic distance was between isolate BxCAJ from Mingguang, Anhui province, and BxCGD from Dongguan, Guangdong province, and BxCNJ3 from Nanjing Jiangning Forest. The genetic diversity among isolates from Nanjing was richer than that among other Chinese isolates (except for isolate BxCAJ) (Table 6). Two UPGMA trees showed the same topology and indicated that B. xylophilus was a monophyletic group. The isolate BxJ1 from Japan was the basal clade of B. xylophilus (Fig. 4). Bootstrap analysis (bootstrap values >50%) significantly suggested that Chinese isolates were monophyletic and divided into two clades: Mingguang (BxCAJ) and Nanjing groups, in which one Nanjing isolate (BxCNJ3) was the basal subclade, and all the other Chinese isolates, including three Nanjing isolates form the other subclade (Fig. 4A). RAPD analysis confirmed the closer relationship between Nanjing isolates and some other isolates of B. xylophilus from China, which provides significant evidence to the origin of the pine wilt disease caused by B. xylophilus in some locales of China (Fig. 5).

Table 6.

Average genetic distances among Bursaphelenchus xylophilus isolates based on RAPD-PCR data.

graphic file with name 127tbl6.jpg

Fig. 4.

Fig. 4

UPGMA trees of Chinese isolates of Bursaphelenchus xylophilus based on RAPD-PCR data. A: UPGMA tree using MEGA 4 with P-distance model and bootstrap analysis. The numbers above each node are bootstrap values. The scale denotes branch length value. B: UPGMA tree constructed using NTSYSpc 2.1 with similarity model.

Fig. 5.

Fig. 5

Possible routes for spread of Bursaphelenchus xylophilus in China based on RAPD-PCR and ITS data analysis. The arrows in the figure denote possible directions. The Δ symbol indicates collection sites for the Bursaphelenchus xylophilus isolates.

Discussion

We selected representative geographical isolates from five provinces of China and from other countries where pine wilt disease occurs in order to investigate the possible origins of B. xylophilus in China and worldwide. Kanzaki and Futai (2002) studied the relationship among Bursaphelenchus species based on ITS regions and COI gene sequences and found that B. xylophilus probably originated in North America from an isolate of B. mucronatus from Canada. Thereafter, B. mucronatus was used as out-group to reveal the systematic relationships among different geographical isolates of B. xylophilus from China and other countries.

Several molecular markers, such as homologous DNA probes, ITS-RFLP and RAPD, have been used to demonstrate the variability of different geographical isolates of B. xylophilus. By using homologous DNA probes, Tares et al. (1992) divided B. xylophilus into US, Canadian and Japanese subtypes. The US and Japanese subtypes shared a common ancestor. Iwahori et al. (1998) found that the ITS-RFLP map of Japanese, Chinese and US isolates were highly homologous. Lu et al. (2001) reported that the restriction enzyme map of ITS regions of B. xylophilus isolates from China and Japan were the same, but different from the Canadian. We used two molecular markers with different evolutionary rates to discuss the variability of geographical isolates of B. xylophilus and obtained results similar to those of previous studies. Genetic diversity analysis revealed that B. xylophilus isolates from China, Japan and the US share identical sequences in the D2/3 region of 28S rDNA and similar nucleotide sequences in the ITS region, which suggests that isolates from these countries probably share a common ancestor. The low genetic diversity among Chinese, Japanese and US isolates of B. xylophilus suggests that B. xylophilus in those countries originated from a single introduction of the pest.

Further phylogenetic analysis also showed that isolates from China, Japan and the US formed a monophyletic group which was the sister group of the clade composed by Canadian isolates. Our results confirm the hypothesis that B. xylophilus originated in North America (Knowles et al., 1983; Dwinell, 1993; Mota et al., 1999; Kanzaki and Futai, 2002). The sequences of the ITS region of six Chinese isolates of B. xylophilus are identical to those of three Portuguese isolates. This is consistent with the lower genetic variability observed by Vieira et al. (2007) in isolates from the two countries relative to an isolate from the US, as revealed by RAPD, and suggests an East Asian origin of the Portuguese B. xylophilus. Japanese isolates of B. xylophilus were paraphyletic groups with one clade more closely related to the Chinese and Portuguses groups. The two clades together form a sister group with another Japanese clade. This suggests that the B. xylophilus present in China may have spread from Japan.

The D2/3 region of 28S rDNA and ITS regions provided some useful evidence for understanding the origin and spread of B. xylophilus among different countries, but no useful data for the spread of B. xylophilus within China. For this reason, RAPD was utilized to investigate the genetic diversity of B. xylophilus isolates from China. The average genetic variation of B. xylophilus in China was 0.150, which is higher than that of B. xylophilus in Portugal (<0.1) as revealed by RAPD. This was consistent with the occurrence history of B. xylophilus in the two countries. The genetic variation between Chinese isolate BxCAJ and other Chinese isolates was higher than the average genetic variation among all Chinese isolates. RAPD data also showed that BxCAJ, an isolate from Mingguang, Anhui, forms a group distinct from the main Chinese isolates. Surprisingly, although Mingguang is adjacent to Nanjing, the relationships between isolates of B. xylophilus collected from these two places was farther apart than those between Nanjing isolates and all the other Chinese isolates. This may imply that the isolate of B. xylophilus in Mingguang was introduced from abroad independently. The average genetic diversity among Nanjing isolates (0.138) was higher than that (0.129) among other Chinese isolates (not including BxCAJ), which could indicate that Nanjing was the first occurrence place of B. xylophilus in China. Phylogenetic analysis based on RAPD showed that B. xylophilus isolates from South of Anhui, Shandong, Zhejiang and Guangdong provinces were closely related to Nanjing isolates. This suggests that pine wilt disease caused by B. xylophilus in some locales of China was probably dispersed from Nanjing.

Three molecular markers revealed that the relationship between Chinese isolates of B. xylophilus and those from Japan are closest, suggesting that B. xylophilus could have been first introduced to China from Japan (Fig. 3). Canadian isolates are in the basal branch of B. xylophilus, which confirms that B. xylophilus probably originated in North America (Fig. 3). Further RAPD phylogenetic analysis revealing the closer relationship between Nanjing isolates of B. xylophilus and other Chinese isolates suggests that pine wilt disease in those parts of China was probably dispersed from Nanjing, where pine wilt disease first occurred in China (Fig. 5).

Footnotes

This research was supported by the China Post-doctoral Science Foundation (20060390292), Jiangsu Province Natural Science Foundation (BK2006560) and Jiangsu Province Post-doctoral Science Foundation (0601030B). We thank Prof. John M. Webster (Simon Fraser University, Canada), Prof. Yang Baojun (Chinese Academy of Forestry, China), Prof. Yang Rongzheng (Anhui Agricultural University, China), Dr. Gao Xuebiao (South China Agricultural University, China), Mr. Shen Peiyin (Nanjing Entry-Exit Inspection and Quarantine Bureau, China) and Mr. Zhang Zhiyu (Qingdao Entry-Exit Inspection and Quarantine Bureau, China) for providing samples.

This paper was edited by Paula Agudelo.

Literature Cited

  1. Adams BJ, Burnell AM, Powers TO. A phylogenetic analysis of the genus Herterohabditis (Nemata: Rhabditidae) based on internal transcribed spacer 1 DNA sequence data. Journal of Nematology. 1998;30:22–39. [PMC free article] [PubMed] [Google Scholar]
  2. Beckenbach K, Blaxter M, Webster JM. Phylogeny of Bursaphelenchus species derived from analysis of ribosomal internal transcribed spacer DNA sequences. Nematology. 1999;1:539–548. [Google Scholar]
  3. Cheng HR, Lin MS, Li WQ. The occurrence of a pine wilting disease caused by a nematode found in Nanjing. Forest Pest and Disease. 1983;(4):1–5. [Google Scholar]
  4. China National Forestry Department Announcement, 2006. No.2.
  5. Chio IH, Park JY, Shin SC, Park IK. Nematicidal activity of medicinal plant extracts and two cinnamates isolated from Kaempferia galangal L. (Proh Hom) against the pine wood nematode, Bursaphelenchus xylophilus . Nematology. 2006;8:359–365. [Google Scholar]
  6. Conceição Da, Santos Dos, Oliveira Abrantes De, Santos De Almeida. Using RAPD markers to analyse genetic diversity in Portuguese potato cyst nematode populations. Nematology. 2003;5:137–143. [Google Scholar]
  7. De Giorgi C, Veronico P, De Luca F, Natilla A, Lanave C, Pesole G. Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin. Molecular and Biochemical Parasitology. 2002;124:91–99. doi: 10.1016/s0166-6851(02)00161-5. [DOI] [PubMed] [Google Scholar]
  8. Dropkin VH, Foudin AS. Report of the occurrence of Bursaphelenchus lignicolus induced pine wilt disease in Missouri. Plant Disease Reporter. 1979;63:904–905. [Google Scholar]
  9. Du XM, Zhang WD, Yan ZF. Pine wood nematode was detected by Shenzhen, Guangzhou, and Shanghai ports. Plant Quarantine. 1999;13:223. [Google Scholar]
  10. Dwinell LD. First record of pinewood nematode (Bursaphe-lenchus xylophilus) in Mexico. Plant Disease. 1993;77:846. [Google Scholar]
  11. Dwinell LD. The pinewood nematode: Regulation and mitigation. Annual Review of Phytopathology. 1997;35:153–166. doi: 10.1146/annurev.phyto.35.1.153. [DOI] [PubMed] [Google Scholar]
  12. Ellis RE, Sulston JE, Coulson AR. The rDNA of C. elegans: Sequence and structure. Nucleic Acids Research. 1986;14:22345–2364. doi: 10.1093/nar/14.5.2345. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Evans HF, McNamara DG, Braasch H, Chadouef J, Magnusson C. Pest risk analysis (PRA) for the territories of the European Union (as PRA area) on Bursaphelenchus xylophilus and its vectors in the genus Monochamus. EPPO Bulletin. 1996;26:199–249. [Google Scholar]
  14. Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 1985;39:783–791. doi: 10.1111/j.1558-5646.1985.tb00420.x. [DOI] [PubMed] [Google Scholar]
  15. Guirao P, Moya A, Cenis JL. Optimal Use of Random Amplified Polymorphism DNA in Estimating the Genetic Relationship of Four Major Meloidogyne spp. Genetics. 1995;85(5):547–551. [Google Scholar]
  16. Harmey JH, Harmey MA. Detection and identification of Bursaphelenchus species with DNA fingerprinting and polymerase chain reaction. Journal of Nematology. 1993;25:406–415. [PMC free article] [PubMed] [Google Scholar]
  17. Hominick WM, Briscoe BR, Pino FG, Jian Heng del, Hunt DJ, Kozodoy E, Mracek Z, Nguyen KB, Reid AP, Spiridonov S, Stock SP, Sturhan D, Waturu C, Yoshida M. Biosystematics of entomopathogenic nematodes: Current status, protocols and definitions. Journal of Helminthology. 1997;71:271–298. doi: 10.1017/s0022149x00016096. [DOI] [PubMed] [Google Scholar]
  18. Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogeny. Bioinformatics. 2001;17:754–755. doi: 10.1093/bioinformatics/17.8.754. [DOI] [PubMed] [Google Scholar]
  19. Iwahori H, Kanzak N, Futai K. Phylogenetic relationship among several isolates of Bursaphelenchus xylophilus and B. mucronatus based on their ribosomal DNA sequences. In: Futai K, Togashi K, Ikeda T, editors. Sustainability of pine forests in relation to pine wilt and decline; Nakanishi Printing; 27–28 Oct., 1998; Tokyo. Tokyo, Japan: Proceedings of International Symposium; 1998. pp. 35–38. [Google Scholar]
  20. Joyce SA, Reid A, Driver F, Curran J. Application of polymerase chain reaction (PCR) methods to the identification of entomopathogenic nematodes. In: Burnell AM, Ehlers RU, Masson JP, editors. COST 812 Biotechnology: Genetics of entomopathogenic nematode-bacterium complexes, Proceedings of Symposium and Workshop, St Patrick's College, Maynooth, Co. Kildare, Ireland. DG XII, Luxembourg: European Commission; 1994. pp. 178–187. [Google Scholar]
  21. Kampfer S, Sturmbauer C, Ott CJ. Phylogenetic analysis of rDNA sequences from adenophorean nematodes and implications for the Adenophorea-Secernetea controversy. Invertebrate Biology. 1998;117:29–36. [Google Scholar]
  22. Kanzaki N, Futai K. A PCR primer set for determination of phylogenetic relationships of Bursaphelenchus species within the xylophilus group. Nematology. 2002;4:35–41. [Google Scholar]
  23. Kiyohara T, Tokushige Y. Inoculation experiments of a nematode, Bursaphelenchus sp., onto pine trees. Journal of Japanese Forestry Science. 1971;53:210–218. [Google Scholar]
  24. Knowles K, Beaubien Y, Wingfield MJ, Bark FA, French DW. The pinewood nematode new in Canada. The Forestry Chronicle. 1983;559:40. [Google Scholar]
  25. Li YH. Quarantine method should be strengthened to wood packing material from Canada. Plant Quarantine. 2005;19:83. [Google Scholar]
  26. Lu W, Chen XX, Zheng JW, Wu H, Zhang LX. A comparative study on ITS region of Bursaphelenchus xylophilus and B. mucronatus by PCR-RFLP. Journal of Agricultural Biotechnology. 2001;9:387–390. [Google Scholar]
  27. Mamiya Y. The pine wood nematode. In: Nickle WR, editor. Plant and insect nematodes. New York: Marcel Dekker; 1984. pp. 589–626. [Google Scholar]
  28. Matsunaga K, Togashi K. A simple method for discriminating Bursapelenchus xylophilus and B. mucronatus by species-specific polymerase chain reaction primer pairs. Nematology. 2004;6:273–277. [Google Scholar]
  29. Metge K, Burgermeister W. Multiple displacement amplification of DNA for ITS-RFLP analysis of individual juveniles of Bursaphelenchus . Nematology. 2005;7:539–548. [Google Scholar]
  30. Mota M, Braasch H, Bravo MA, Penas AC, Burgermeister W, Metge K, Sousa E. First report of Bursaphelenchus xylophilus in Portugal and in Europe. Nematology. 1999;1:727–734. [Google Scholar]
  31. Nadler SA, Bolotin E, Stock SP. Phylogenetic relationships of Steinernema Travassos, 1927 (Nematoda: Cephalobina: Steinernematidae) based on nuclear, mitochondrial and morphological data. Systematic Parasitology. 2006;63:161–81. doi: 10.1007/s11230-005-9009-3. [DOI] [PubMed] [Google Scholar]
  32. Nylander JAA. Evolutionary Biology Centre. Sweden: Uppsala University; 2004. MrModeltest 2.0. Program distributed by the author. [Google Scholar]
  33. Qiu L, Yan X, Zhou Y, Nguyenb KB, Pang Y. Steinernema aciari sp. n. (Nematoda: Steinernematidae), a new entomopathogenic nematode from Guangdong, China. Journal of Invertebrate Pathology. 2005;88:58–69. doi: 10.1016/j.jip.2004.09.004. [DOI] [PubMed] [Google Scholar]
  34. Rohlf JF. Setauket, NY: Exeter Software; 2000. NTSYSpc: Numerical Taxonomy and Mulitivariate Analysis System. Version 2.1, Users Guide. [Google Scholar]
  35. Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution. 2007;24:1596–1599. doi: 10.1093/molbev/msm092. [DOI] [PubMed] [Google Scholar]
  36. Tares S, Abad P, Bruguier N. Identification and evidence for relationships among geographical isolates of spp. Heredity. 1992;68:157–164. doi: 10.1038/hdy.1992.24. [DOI] [PubMed] [Google Scholar]
  37. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nuclear Acids Research. 1997;25:4876–4882. doi: 10.1093/nar/25.24.4876. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Vieira P, Burgermeister W, Mota M, Metge K, Silva G. Lack of genetic variation of Bursaphelenchus xylophilus in Portugal revealed by RAPD-PCR analyses. Journal of Nematology. 2007;39:118–126. [PMC free article] [PubMed] [Google Scholar]
  39. Vrain TC, Wakarchuk DA, Levesque AC, Hamilton RI. Intraspecific rDNA restriction fragment length polymorphism in the Xiphinema americanum group. Fundamental and Applied Nematology. 1992;15:563–573. [Google Scholar]
  40. Wang MX, Zhu SF, Luo K, Zhou LH, Zhao WJ. Studies on real- time fluorescent PCR with TaqMan probe for rDNA- ITS2 of pinewood nematode (Bursaphelenchus xylophilus) Scientia Silvae Sinicae. 2005;41:82–85. [Google Scholar]
  41. Webster JM. Pine wilt disease: A world wide survey. In: Futai K, Togashi K, Ikeda T, editors. Sustainability of pine forests in relation to pine wilt and decline; Nakanishi Printing; 27–28 Oct., 1998; Tokyo, Japan. Tokyo: Proceedings of International Symposium; 1998. pp. 254–260. [Google Scholar]
  42. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research. 1990;18:6531–6535. doi: 10.1093/nar/18.22.6531. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Wu XQ, Xiong DB, An YL. Intra- and Inter-specific genetic relationship analysis of Bursaphelenchus xylophilus and B. mucronatus by RAPD. Journal of Nanjing Forestry University (Natural Sciences Edition) 2005;29:1–4. [Google Scholar]
  44. Xu PF, Shen PY, Tai M, Jiao GY. Pine wood nematode was detected from imported wood packing material. Plant Quarantine. 1995;9:297. [Google Scholar]
  45. Yang BJ, Wang QL. Distribution of Bursaphelenchus xylophilus in our country. Research of Forestry Sciences. 1988;1:450–451. [Google Scholar]
  46. Yang ZF, Wang HY, Zhang SS. Identification of Bursaphelenchus species in the imported pine packing boards. Fujian Agriculture and Forestry University (Natural Sciences Edition) 2004;33:38–41. [Google Scholar]
  47. Yano M. Investigations on the cause of ping morality in Nagasaki prefecture. Sanrin-Koho. 1913;4:1–14. [Google Scholar]
  48. Ye W, Giblin-Davis RM, Braasch H, Morris K, Thomas WK. Phylogenetic relationships among Bursaphelenchus species (Nematoda: Parasitaphelenchidae) inferred from nuclear ribosomal and mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution. 2007;43:1185–1197. doi: 10.1016/j.ympev.2007.02.006. [DOI] [PubMed] [Google Scholar]
  49. Yi C, Byun B, Park J, Yang S, Chang K. First finding of the pine wood nematode, Bursaphelenchus xylophilus (Steiner & Buhrer) Nickle and its insect vector in Korea. Research report of the Forestry Research Institute Seoul. 1989;38:141–149. [Google Scholar]
  50. Zhang KY, Zhang CX, Lu Y, Xu CH, Wang X, Lin MS. Optimal RAPD-PCR conditions developing and molecular identification marker selecting for Bursapelenchus xylophilus . Journal of Nanjing Agricultural University. 2006;29:61–65. [Google Scholar]
  51. Zheng J, Subbotin SA, He S, Gu J, Moens M. Molecular characterization of some Asian isolates of Bursaphelenchus xylophilus and B. mucronatus using PCR-RFLPs and sequences of ribosomal DNA. Russian Journal of Nematology. 2003;11:17–22. [Google Scholar]

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