Summary
The BimEL tumor suppressor is a potent pro-apoptotic BH3-only protein. We found that in response to survival signals BimEL was rapidly phosphorylated on three serine residues in a conserved degron, facilitating binding and degradation via the F-box protein βTrCP. Phosphorylation of the BimEL degron was executed by Rsk1/2 and promoted by the Erk1/2-mediated phosphorylation of BimEL on Ser69. Compared to wild type BimEL, a BimEL phosphorylation mutant unable to bind βTrCP was stabilized and consequently potent at inducing apoptosis by the intrinsic mitochondrial pathway. Moreover, although non-small cell lung cancer (NSCLC) cells often become resistant to gefitinib (a clinically relevant tyrosine kinase inhibitor that induces apoptosis through BimEL), silencing of either βTrCP or Rsk1/2 resulted in BimEL-mediated apoptosis of both gefitinib-sensitive and gefitinib-insensitive NSCLC cells. Our findings reveal that βTrCP promotes cell survival in cooperation with the ERK-RSK pathway, by targeting BimEL for degradation.
Introduction
Bim (Bcl-2 Interacting Mediator of cell death) is a powerful, proapoptotic member of the Bcl-2 protein family expressed mainly in hematopoietic, epithelial, neuronal, and germ cells (O’Reilly et al., 2000). Alternative mRNA splicing generates three major isoforms: short (BimS), long (BimL), and extra long (BimEL), with BimEL the predominant isoform in most tissues (O’Connor et al., 1998; O’Reilly et al., 2000). Bim plays a key role in linking stress-induced signals to the intrinsic (mitochondrial) apoptotic pathway. Upon exposure to stress, such as growth factor deprivation, Bim activates proapoptotic Bak and Bax that, in turn, permeabilize the mitochondrial membrane, causing the release of cytochrome C and the consequent activation of caspases to cause programmed cell death. Mechanistically, Bim is thought to activate Bax and Bak by direct binding and/or by binding and inhibiting anti-apoptotic members of the Bcl2 family (Mcl1 and Bcl-XL), which restrain Bak and Bax (Fletcher and Huang, 2008).
Several studies suggest that Bim functions as a tumor suppressor. In mice, inactivation of one allele of Bim accelerates Myc-induced B cell leukemia (Egle et al., 2004). In human cancers, Bim is eliminated via various mechanisms to provide a growth advantage to the tumor cells. Homozygous deletions of the Bim locus have been reported in mantle cell lymphomas, and methylation of the Bim promoter is found in certain Burkitt’s lymphomas and diffuse large B-cell lymphomas (Mestre-Escorihuela et al., 2007; Tagawa et al., 2005). Moreover, in a manner similar to other tumor suppressor proteins, such as p27 and p53, Bim levels are decreased in transformed cells via enhanced protein degradation, particularly when the ERK pathway is constitutively activated. For example, in transformed epithelial cells (both in culture and in animals), paclitaxel-induced apoptosis is mediated by Bim (Tan et al., 2005). When the H-Ras/ERK pathway is activated in tumor cells, BimEL is eliminated by proteasomal degradation, and cells become refractory to paclitaxel. Treatment with bortezomib, a proteasome inhibitor, restores BimEL levels, thereby re-sensitizing cells to paclitaxel.
Bim levels are also low in non-small cell lung cancer (NSCLC) cells harboring activating EGFR mutations (Costa et al., 2007; Cragg et al., 2007; Deng et al., 2007a; Gong et al., 2007). Inhibition of EGFR tyrosine kinase activity using drugs such as gefitinib results in BimEL accumulation and, consequently, induction of apoptosis. Similarly, BimEL accumulation mediates imatinib-induced cell death of Bcr/Abl+ leukemic cells (Belloc et al., 2007; Kuroda et al., 2006).
The proteasomal degradation of BimEL is dependent on phosphorylation by Erk1/2 on a specific serine (Ser69 in human) (Hubner et al., 2008; Ley et al., 2003; Ley et al., 2004; Ley et al., 2005; Luciano et al., 2003). However, despite the importance of BimEL in determining cell fate and the fact that its degradation enables tumor cells to escape chemotherapy-induced apoptosis, the cellular machinery responsible for BimEL degradation has not yet been identified. The study described herein identifies the ubiquitin ligase and kinases that target BimEL for proteasomal degradation, elucidating a critical control mechanism for the apoptotic response.
Results
Degradation of BimEL is promoted by ERK-dependent phosphorylation on Ser69. As phosphorylation often targets proteins to SCF (Skp1-Cullin1-F-box protein) ubiquitin ligase complexes, we asked whether BimEL binds to Cul1 in HEK293 cells. We found that in the presence of PMA, an activator of the ERK pathway, Cul1, but not Cul2, was able to co-immunoprecipitate endogenous BimEL (Fig. S1). We then investigated which F-box protein specifically targets BimEL to the SCF. Screening of the FBXW (F-box, WD repeat) family proteins revealed that endogenous BimEL specifically interacts with βTrCP1 and βTrCP2 (Fig. 1A), two paralogous F-box proteins that (to date) share identical biochemical properties and substrates (Frescas and Pagano, 2008). (The term βTrCP will refer to both, unless specified.) The interaction of endogenous BimEL and βTrCP1 was also observed (Fig. S2). Addition of PMA to HEK293 cells promoted the binding of endogenous BimEL to βTrCP1 and binding was enhanced when the proteasome inhibitor MG132 blocked BimEL degradation (Fig. 1B). However, the binding of BimEL to βTrCP1 in the presence of PMA and MG132 was strongly reduced when PMA-induced ERK activation was inhibited with UO126, a MEK inhibitor.
These results indicated that the binding of BimEL to βTrCP is stimulated by the activation of Erk1/2, suggesting (consistent with previous evidence that Erk1/2 induce BimEL degradation) that βTrCP controls the phosphorylation-dependent degradation of BimEL. We therefore investigated this hypothesis by reducing the expression of both βTrCP1 and βTrCP2 in HEK293 cells using a previously validated siRNA. Fig. 1C shows that βTrCP silencing counteracted the effect of PMA on BimEL degradation, stabilizing BimEL. Finally, immunopurified βTrCP1, but not an inactive βTrCP1(ΔF-box) mutant, induced the in vitro ubiquitylation of BimEL (Fig. 1D), supporting the hypothesis that the effect of βTrCP on BimEL is direct.
βTrCP binds its substrates via phosphorylated residues in a conserved degron, typically the consensus sequence DpSGXXpS. In searching for a βTrCP degron in human BimEL, we found the conserved motif 91RSSSGYFSFD100 (Fig. S3A), in which the charge on the aspartic acid is potentially substituted by phosphorylated Ser93. This sequence fits into the three-dimensional structural space of the βTrCP1 substrate-binding surface, similar to the phospho-degron of βcatenin, a known substrate of βTrCP (Figs. S3C-E). To test whether BimEL binds βTrCP via this motif, we generated a number of serine to alanine mutants (Fig. S3B) and tested their binding to endogenous βTrCP1. Single mutations of Ser93, Ser94, and Ser98 to Ala or a double Ser94/98Ala mutation (S94/98A) abrogated the interaction between BimEL and endogenous βTrCP1, although they did not abolish BimEL binding to endogenous Mcl1 (Fig. 2A). Mutation of Ser92 did not inhibit BimEL binding to either βTrCP1 or Mcl1.
To investigate whether phosphorylation plays a role in the interaction with βTrCP, we used immobilized, synthetic peptides spanning the candidate phospho-degron (aa 88-100). While a peptide containing phosphorylated Ser93, Ser94, and Ser98 efficiently bound βTrCP1 (but not FBXW2 and FBXW4), a corresponding, non-phosphorylated peptide was unable to bind βTrCP1 (Fig. 2B), in agreement with the idea that phosphorylation of Ser93, Ser94, and Ser98 directly mediates the interaction with βTrCP. Furthermore, only in vitro phosphorylated BimEL binds βTrCP2 (see later, Fig. 3F).
To further investigate the role of BimEL phosphorylation, we generated a phospho-specific antibody against the 88CLSRSpSpSGYFpSFD100 peptide with phospho-serines at positions 93, 94, and 98. This antibody recognized wild type BimEL but not a BimEL(S93/94/98A) mutant, while single and double amino acid BimEL mutants displayed decreasing levels of detection (Fig. S4A), indicating that all three serine residues are phosphorylated and contribute to recognition by this antibody. In addition, λ-phosphatase treatment of immunopurified BimEL abolished BimEL recognition by the phospho-specific antibody (Fig. S4B). Using this reagent, we tested BimEL phosphorylation under different conditions in vivo. We found that both endogenous and exogenous BimEL were rapidly phosphorylated in HEK293 cells in response to mitogenic stimulation (serum or PMA), which correlated with ERK activation (Figs. 2C,D). In contrast, BimEL was not phosphorylated in serum-starved cells or UO126-treated cells. Similarly, cytokines also promoted phosphorylation of BimEL on its degron, as shown with IL2 in primary mouse T cells or IL3 in FL5.12 and BaF/3 cell lines (Fig. 2E).
Interestingly, mutation of Ser69 to Ala strongly inhibited phosphorylation of the BimEL degron despite PMA treatment (Fig. 2D). Accordingly, the BimEL(S69A) mutant bound less efficiently to endogenous βTrCP1 (Fig. 2A). These results indicate that phosphorylation on Ser69 promotes the phosphorylation of Ser93, Ser94, and Ser98 (see also later, Figs. 3E and S7A). Such bimodal activation has been previously demonstrated for other substrates of βTrCP that require combinatorial phosphorylation by two cooperative kinases (Hunter, 2007).
Erk1/2-mediated phosphorylation of Ser69 is well-established, so we pursued the identification of the kinase that phosphorylates the BimEL degron. GPS (Group Based Prediction System), a kinase prediction program (Xue et al., 2008), detected consensus sites for Rsk1/2 and S6k1/2 in the BimEL degron. To gain insight into the kinase involved in BimEL phosphorylation, we used pharmacological inhibitors and found that FMK [an RSK inhibitor (Cohen et al., 2005)], but not LY294002 (a PI-3K inhibitor, which, consequently, inhibits also S6k1/2), strongly reduced both the phosphorylation of BimEL on Ser93/Ser94/Ser98 and the binding of BimEL to βTrCP1 (Figs. 3A,B). Similarly, another RSK inhibitor, BI-D1870 (Sapkota et al., 2007) reduced BimEL-βTrCP1 interaction too (not shown). We also found that Rsk1, but not S6k1, was co-immunoprecipitated with BimEL in vivo (Fig. S5). All these results suggest that Rsk1/2 phosphorylate the BimEL degron. Accordingly, knockdown of both Rsk1 and Rsk2 with two validated siRNAs inhibited the PMA-induced phosphorylation of Ser93/Ser94/Ser98 in both endogenous and exogenous BimEL (Figs. 3C and S6A). Importantly, downregulation of Rsk1/2 inhibited BimEL degradation (Fig. 3D) and BI-D1870 treatment induced BimEL accumulation (Fig. S6B).
To test whether Rsk1 can directly phosphorylate the BimEL degron, we performed an in vitro kinase assay using recombinant, bacterially-expressed, purified BimEL and kinases. Rsk1 phosphorylated the degron of BimEL, as shown by the appearance of a slow migrating band and recognition by our phospho-specific antibody, and this event was promoted by Erk1 (Fig. 3E). In contrast, neither Erk1 nor S6k1 alone was able to induce phosphorylation of BimEL on Ser93/Ser94/Ser98. Addition of Erk1 did not increase the activating phosphorylation of Rsk1 (bottom panel of Fig. 3E), and when Erk1 was first used to phosphorylate BimEL (and washed away prior to Rsk1 addition), the stimulation by ERK was observed for wild type BimEL but not for BimEL(S69A) (Fig. S7A). Thus, the enhancement of the Rsk1-dependent phosphorylation of BimEL is not due to the activation of Rsk1 by Erk1; instead it is promoted by the phosphorylation of BimEL on Ser69 by Erk1. We also used single serine mutants and found that Rsk1 was able to phosphorylate (in a ERK-dependent manner) each of the three serines in the BimEL degron (Figs. S7B-D), suggesting that, like other established substrates (Anjum and Blenis, 2008), Rsk1/2 target multiple residues in BimEL. Finally, in agreement with the phosphorylation results, the in vitro binding of βTrCP2 to phosphorylated BimEL was dependent on Rsk1 and stimulated by Erk1 (Fig. 3F).
The above data strongly support a model in which phosphorylation of BimEL on Ser93/Ser94/Ser98 mediates binding to βTrCP and degradation via SCFβTrCP. Therefore, failure to bind βTrCP should result in stabilization of BimEL. To test this hypothesis, we transfected wild type BimEL or BimEL(S94/98A) into HEK293 cells and subsequently treated with PMA and cycloheximide. As predicted, in contrast to wild type BimEL, BimEL(S94/98A), which does not bind βTrCP (Fig. 2A), was not degraded upon PMA treatment (Fig. 4A). Importantly, expression of BimEL(S94/98A) in immortalized Bim-/- mouse embryo fibroblasts (MEFs) triggered a much more robust apoptotic response than that obtained by expressing wild type BimEL or even BimEL(S69A) (Fig. 4B). Neither wild type BimEL or BimEL mutants induced apoptosis in immortalized Bak-/-;Bax-/- MEFs, confirming that BimEL(S94/98A)-dependent cell death occurs via the intrinsic mitochondrial pathway.
We also asked whether RSK and βTrCP mediate survival of primary human CD4+ T cells. Fig. 4C shows that the silencing of either Rsk1/2 or βTrCP in these cells resulted in BimEL accumulation and BimEL-mediated apoptosis (as demonstrated by the return of cell death to background levels when BimEL was downregulated together with Rsk1/2 or βTrCP). Accordingly, primary mouse T cells from wild type mice, but not from Bim-/- mice, died in response to pharmacologic inhibition of RSK (Fig. S8).
To further study the biological significance of the βTrCP- and Rsk1/2-mediated degradation of BimEL, we used non-small cell lung cancer (NSCLC) cells that harbor activating mutations in the Epidermal Growth Factor Receptor (EGFR). Initially, clinically-relevant inhibitors of EGFR tyrosine kinase activity, such as gefitinib, trigger a BimEL-dependent apoptotic response in NSCLCs with EGFR mutations (Costa et al., 2007; Cragg et al., 2007; Deng et al., 2007b; Gong et al., 2007). However, these tumors eventually become resistant to tyrosine kinase inhibitors and lose their ability to die via BimEL upregulation. We examined two EGFR mutant NSCLC cell lines, HCC827 (which are known to be sensitive to gefitinib) and H1650 (which are not) (see also Fig. 4E). Significantly, in the absence of gefitinib, apoptosis was promoted in both HCC827 and H1650 cells when either Rsk1/2 or βTrCP were downregulated (Figs. 4D-F). When BimEL was also silenced, cell death returned to background levels (Figs. 4E,F). Notably, up-regulation of BimEL correlated with the induction of apoptosis in H1650 and HCC827 cells. These experiments showed that restoration of BimEL levels in cells harboring activating mutations in EGFR promotes apoptosis in both gefitinib-sensitive and gefitinib-insensitive NSCLC cells.
Discussion
Despite the importance of BimEL in controlling apoptotic responses, the ubiquitin ligase responsible for its degradation had remained elusive. Two ligases, c-Cbl and a Cul2 complex, have been proposed to target BimEL (Akiyama et al., 2003; Zhang et al., 2008) but these findings have not been confirmed by others (El Chami et al., 2005; Wiggins et al., 2007; Fig. S1). Indeed, we show here that in response to survival signals SCFβTrCP promotes the degradation of BimEL in cooperation with Erk1/2 and Rsk1/2.
Degradation of BimEL enables tumor cells to escape chemotherapy-induced apoptosis. We found that silencing of either βTrCP or Rsk1/2 induces Bim-dependent apoptosis in NSCLC cells harboring activating mutations in EGFR, irrespective of their sensitivity to gefitinib. In a clinical setting, such an increase in cell death could positively affect long-term outcomes, so our findings suggest that inhibition of RSK or βTrCP should be pursued as a rational and valid therapeutic strategy to induce apoptosis of tumor cells in NSCLC and, possibly, other malignancies. Furthermore, since BimEL degradation is dependent on Rsk1/2, but only stimulated by Erk1/2, it is expected that tumor cells that undergo BimEL-dependent death (e.g., in NSCLCs, Bcr/Abl+ leukemia’s, and certain breast cancers) may be more sensitive to RSK inhibitors than to ERK inhibitors.
In summary, we describe the biochemical and molecular details of the mechanisms controlling the degradation of BimEL in both normal and cancer cells. When cells are stimulated with mitogens, βTrCP directs the degradation of BimEL in cooperation with the ERK-RSK pathway, resulting in the inhibition of cell death. At the same time, in cooperation with the PI3K-S6K pathway, βTrCP targets Pdcd4 for degradation, allowing efficient protein synthesis and, consequently, cell growth (Dorrello et al., 2006). Thus, βTrCP coordinates cell survival and cell growth in response to mitogenic stimuli (Fig. S9).
Experimental Procedures
Biochemical methods
Extract preparation, immunoprecipitation, and immunoblotting were previously described (Dorrello et al., 2006). In vitro ubiquitylation was previously described (Busino et al., 2007).
Antibodies
Mouse monoclonal antibodies were from Invitrogen (Cul1, Erk1/2, Rsk1, Rsk2, βTrCP1), Sigma (anti-FLAG), Santa Cruz Biotechnology (Cdc25A), BD Biosciences (βcatenin) and Covance (anti-HA). Rabbit polyclonal antibodies were from Invitrogen (Cul1, Bim, Skp2), Biosource [phospho-Bim(Ser69), phospho-Erk1/2(Thr185/Tyr187)], Cell Signaling [phosho-RSK(Ser380), Bim, Caspase 3, cleaved Caspase 3], Bethyl (βTrCP1), and Santa Cruz (Mcl1). For IP of endogenous Bim we used a rat monoclonal antibody from Millipore. The phospho-specific antibody to BimEL was generated using the phosphopeptide CLSRSpSpSGYFpSFD.
Plasmids
BimEL mutants were generated using QuickChange Site-directed Mutagenesis (Stratagene). Both wild type BimEL and BimEL mutants were subcloned into the pBabe retroviral vector. All cDNAs were completely sequenced.
Transient transfections and retrovirus-mediated gene transfer
Transfections using the calcium phosphate and retrovirus-mediated gene transfer were previously described (Dorrello et al., 2006).
Apoptosis Assay
Apoptosis was assessed using AnnexinV-FITC and propidium iodide staining (BD Pharmigen).
Supplementary Material
Acknowledgments
We thank M. McMahon, D. Ryoo, and J. Skaar for suggestions and critically reading the manuscript; E. McIntush and Bethyl Laboratories for providing βTrCP1 (BL726b) antibody, and I. Aifantis, J. Blenis, S. Buonamici, T. Cardozo, C. Lee, S. Fuchs, K. Kinnally, S. Korsmeyer L. Liebes, J. Maller, W. Pao, S. Valvo, and H.G. Wang for reagents and/or suggestions. M.P. is grateful to T. M. Thor for continuous support. This work was supported by a DOD fellowship to ED, an AACR fellowship to FB, a fellowship from the America Italian Cancer Foundation and from Provincia di Benevento to DG, grants from the National Institutes of Health to M.P. (R01-GM57587, R37-CA76584, and R21-CA125173), M.L.D. (R01-AI43542), and J.T. (GM071434), and an Australian NHMRC Fellowship, an Australian NHMRC Program Grant, and an Leukemia and Lymphoma Society SCOR grant to D.C.S.H. J.T. and M.P. are Investigators with the Howard Hughes Medical Institute.
Footnotes
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