Table 2.
Contact pair prediction accuracy of direct prediction and two-level models on the independent test set
| Methods | Contact pair prediction |
δ-analysis (|δ| = 4) |
|||
|---|---|---|---|---|---|
| Accuracy (%) |
IMP | P-value | Accuracy (%) | ||
| Direct prediction | |||||
| TMhitL2 onlyPred | 9.8 (±4.0) | 47/480 | 26.4 | 1.2e-57 | 30.6 (±7.8) |
| TMhitL2 onlyObs | 12.7 (±4.9) | 61/480 | 34.2 | 1.6e-72 | 38.5 (±7.3) |
| Two-level model | |||||
| TMhit Pred | 12.5 (±4.8) | 60/481 | 33.7 | 5.4e-80 | 34.8 (±6.5) |
| TMhit Obs | 16.0 (±4.5) | 77/481 | 43.1 | 1.1e-99 | 41.2 (±7.2) |
The standard error (SEboot) estimated by bootstrapping follows the ‘±’ sign.