Abstract
Epstein-Barr virus (EBV) nuclear antigen 3C (EBNA3C) is one of the essential latent antigens for primary B-cell transformation. Previous studies established that EBNA3C facilitates degradation of several vital cell cycle regulators, including the retinoblastoma (pRb) and p27KIP proteins, by recruitment of the SCFSkp2 E3 ubiquitin ligase complex. EBNA3C was also shown to be ubiquitinated at its N-terminal residues. Furthermore, EBNA3C can bind to and be degraded in vitro by purified 20S proteasomes. Surprisingly, in lymphoblastoid cell lines, EBNA3C is extremely stable, and the mechanism for this stability is unknown. In this report we show that EBNA3C can function as a deubiquitination enzyme capable of deubiquitinating itself in vitro as well as in vivo. Functional mapping using deletion and point mutational analysis showed that both the N- and C-terminal domains of EBNA3C contribute to the deubiquitination activity. We also show that EBNA3C efficiently deubiquitinates Mdm2, an important cellular proto-oncogene, which is known to be overexpressed in several human cancers. The data presented here further demonstrate that the N-terminal domain of EBNA3C can bind to the acidic domain of Mdm2. Additionally, the N-terminal domain of EBNA3C strongly stabilizes Mdm2. Importantly, EBNA3C simultaneously binds to both Mdm2 and p53 and can form a stable ternary complex; however, in the presence of p53 the binding affinity of Mdm2 toward EBNA3C was significantly reduced, suggesting that p53 and Mdm2 might share a common overlapping domain of EBNA3C. We also showed that EBNA3C enhances the intrinsic ubiquitin ligase activity of Mdm2 toward p53, which in turn facilitated p53 ubiquitination and degradation. Thus, manipulation of the oncoprotein Mdm2 by EBNA3C potentially provides a favorable environment for transformation and proliferation of EBV-infected cells.
Epstein-Barr virus (EBV) is a ubiquitous human gammaherpesvirus that persists for the life of the host. EBV infects more than 90% of the adult population worldwide and efficiently immortalizes infected human primary B cells. This ability is likely to predispose the host to a variety of cancers, including endemic Burkitt's lymphoma, nasopharyngeal carcinoma, posttransplant lymphoproliferative disease, and some subtypes of Hodgkin's disease (61).
One of the biological hallmarks of EBV-cell interaction is establishment of latency. Three major types of latency have been described, each having its own distinct pattern of gene expression. Type I latency is typically reflected in Burkitt's lymphoma tumors (72). EBV nuclear antigen 1 (EBNA1) protein is the predominant viral antigen expressed in this form of latency (72). Type II latency is typically seen in nasopharyngeal carcinoma and Hodgkin's disease, where EBNA1, latent membrane protein 1 (LMP1), and LMP2A and LMP2B proteins are expressed (72). Type III latency, also referred to as the growth program (72), is seen in lymphoblastoid cell lines (LCLs) and results in the expression of nine viral latency proteins, including six nuclear proteins (EBNA1, EBNA2, EBNA3A, EBNA3B, EBNA3C, and EBNALP) and three latent membrane proteins (LMP1, LMP2A, and LMP2B), and the viral RNAs which include the EBERs and BARTs (34, 61). Four viral antigens, EBNA2, LMP1, EBNA3A, and EBNA3C, have been shown to be absolutely essential for EBV transformation of human B cells and establishment of latency in vitro (2, 32, 56, 69).
EBNA3C has been shown to play a complex regulatory role in the transcription of viral and cellular genes (27, 45, 63, 82). In addition to its transcriptional functions, EBNA3C has cell cycle-regulatory functions, mediated by direct protein-protein interactions with regulators of the cell cycle (35, 36, 37). Recently, we demonstrated that EBNA3C targets the SCFSkp2 E3 ubiquitin (Ub) ligase complex and thereby destabilizes a number of important cell cycle components such as retinoblastoma protein (Rb) and p27KIP (36, 37). EBNA3C is also ubiquitinated at its N-terminal domain through interaction with the SCFSkp2 E3 ligase complex (37). Studies have also shown that EBNA3C interacts with the α subunit of the 20S proteasome and is degraded in vitro by purified 20S proteasomes (75). Surprisingly, in actively proliferating LCLs, EBNA3C appears to be remarkably stable, with no indication of proteasome-mediated degradation (75). However, the mechanistic details of EBNA3C stabilization are yet to be elucidated.
Mdm2 was first described as one of the genes amplified on double-minute chromosomes present in the spontaneously transformed BALB/c/3T3 murine cell line 3T3DM (10). Subsequent analysis demonstrated that Mdm2 is overexpressed in 5 to 10% of human tumors (29, 53). The best-known biological function of the human version of Mdm2 (Hdm2) is to negatively regulate the activity of the tumor suppressor protein p53 (42, 54). Under conditions of cellular stress, p53 upregulates the transcription of an array of genes which are critically implicated in control of numerous cellular processes including the cell cycle, apoptosis, DNA repair, differentiation, and senescence (65). The N-terminal amino acid residues 1 to 120 of Mdm2 contain the interaction domain which binds to the transactivation domain of p53 (12, 57). The C-terminal region of Mdm2 encodes the Ub ligase activity specific for p53 (22, 39). Hence, the interaction of Mdm2 with p53 operates both to inhibit its transcriptional regulatory activity and to facilitate the degradation of p53 through ubiquitination (22, 39). Additionally, Mdm2 harbors a nuclear export signal that promotes export of the Mdm2-p53 complex from the nucleus to the cytoplasm (64). Mdm2 also regulates sumoylation (14), neddylation (80), and acetylation (38) of p53. It should be noted that in response to exposure to various types of stress, p53 is stabilized and activated. Several pathways leading to inhibition of Mdm2 action have been identified, including the phosphorylation of Mdm2 by DNA damage-induced kinases (33, 50, 51, 70) and the interaction of Mdm2 with other cellular proteins (9, 74), including ARF, which disrupts Mdm2 regulation of p53 by blocking Mdm2 Ub ligase activity (30, 58, 68, 81). Conversely, the mdm2 gene is among those that are upregulated by p53; thus, not only is Mdm2 required for keeping p53 in check under nonstress conditions and releasing it when appropriate, but it is also part of an autoregulatory feedback loop (54).
Overexpression of Mdm2 abolishes p53-mediated cell cycle arrest and apoptosis (13). These studies are consistent with clinical observations that implicate a dysfunctional p53-Mdm2 system in close to 70% of all tumor samples (53). In about 7% of all cancers, wild-type p53 is present and the problem lies in a surplus of Mdm2 (53). For example, single nucleotide polymorphism 309 in the Mdm2 promoter, which leads to high levels of Mdm2, accelerates tumor formation in both hereditary and spontaneous cancers (6). In tumors with wild-type p53, an attractive route to therapy would be to diminish the inhibitory effects of Mdm2 by blocking its interaction with p53 (83). Interestingly, Mdm2 is an unstable protein which is ubiquitinated in an autocatalytic manner (19, 25). However, Mdm2 can differentiate between self-ubiquitination and targeting p53 for ubiquitination. It has been confirmed that EBV is associated with elevated levels of Mdm2 expression (71, 77). Thus, mechanisms that regulate the respective activities of Mdm2 in the context of EBV infections and transformation should provide information as to its contribution to EBV-associated cancers.
This study provides the first evidence that EBNA3C plays a dual role in the Ub-proteasome-mediated protein degradation pathway. We demonstrate here that, in addition to recruiting the E3 Ub ligase, SCFSkp2 (37), EBNA3C can also function as a deubiquitinating enzyme, though it is unclear how these activities of EBNA3C, which have opposing effects on cell fate, are differentially regulated. The results presented here also emphasize that EBNA3C can suppress the function of the p53 tumor suppressor by stabilizing Mdm2 function through deubiquitination.
MATERIALS AND METHODS
Plasmids, antibodies, and cell lines.
pA3M or pA3F-EBNA3C constructs express either full-length EBNA3C or different truncated versions of EBNA3C with either a Myc tag or a Flag tag at the carboxy-terminal end, as described previously (3, 37). Glutathione S-transferase (GST)-EBNA3C truncation mutants have been previously described (3). The C143N point mutation in the EBNA3C gene was prepared by a standard PCR primer mutagenesis method. Constructs expressing either green fluorescent protein (GFP)-tagged full-length EBNA3C or different GFP-tagged truncated mutants were prepared by cloning PCR-amplified fragments into pEGFP-C1 vector (BD Biosciences Clontech) at EcoRI and SalI restriction sites. pCDNA3-HA-Ub was provided by George Mosialos (Alexander Fleming Biomedical Sciences Research Center, Vari, Greece) (76). pCDNA3-myc-HAUSP was provided by Aart G. Jochemsen (Leiden University Medical Center, The Netherlands) (52). pGEX-Mdm2 was a kind gift from Wafik S. El-Deiry (University of Pennsylvania). pRK5-HA-Mdm2 and pRK5-Flag-Mdm2 constructs were provided by Xiaolu Yang (University of Pennsylvania) (71). pRK5-HA-Mdm2 was used as a template for preparing constructs expressing either full-length Mdm2 or different truncated versions with a carboxy-terminal Flag tag by cloning PCR-amplified fragments into pA3F vector at EcoRI and NotI restriction sites. All constructs and mutations were verified by DNA sequencing (University of Pennsylvania DNA sequencing facility).
Mouse monoclonal antibody reactive to Mdm2 (SMP14) was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Mouse monoclonal antibody reactive to Flag epitope (M2) was purchased from Sigma-Aldrich Corp. (St. Louis, MO). The monoclonal antibodies mouse antihemagglutinin (anti-HA; 12CA5) and mouse anti-Myc (9E10) were prepared from the respective hybridoma cultures. A10 monoclonal and rabbit polyclonal antibodies reactive to EBNA3C have been previously described (16).
HEK 293 cells are human embryonic kidney cells transformed with sheared adenovirus type 5 DNA (20). HEK 293T cells are HEK 293 cells that stably express the simian virus 40 large-T antigen. Both HEK 293 and 293T cells were obtained from Jon Aster (Brigham and Women's Hospital, Boston, MA). U2OS is a human osteosarcoma cell line (59). The p53-null cell line Saos-2 is also a human osteosarcoma cell line and was obtained from Jon Aster (Brigham and Women's Hospital, Boston, MA). MEF p53−/− Mdm2−/− is a mouse embryonic fibroblast cell line null for both p53 and Mdm2 and was a kind gift from Xiaolu Yang (University of Pennsylvania) (71). HEK 293T, U2OS, Saos-2, and MEF cells were grown in Dulbecco's modified Eagle's medium (purchased from HyClone, Logan, UT) supplemented with 10% fetal bovine serum, 50 U/ml penicillin, 50 μg/ml streptomycin, and 2 mM l-glutamine. The Burkitt's lymphoma cell line BJAB is derived from an EBV-negative African Burkitt's lymphoma tumor (15) and was provided by Elliott Kieff (Harvard Medical School, Boston, MA). BJAB and the EBV-positive cell line LCL2 were maintained in RPMI 1640 medium (HyClone, Logan, UT) supplemented as described for Dulbecco's modified Eagle's medium above. EBNA3C-expressing BJAB cell lines have been described previously (62). All cultures were incubated at 37°C in a humidified environment supplemented with 5% CO2.
Transfection.
HEK 293T cells were transfected by electroporation with a Bio-Rad Gene Pulser II electroporator. Briefly, 15 × 106 cells harvested in exponential phase were collected, washed in phosphate-buffered saline (PBS), and resuspended in 400 μl of the appropriate medium without serum containing DNA for transfection (3, 35). Resuspended cells were transferred to an 0.4-cm-gap cuvette, and electroporation was performed at 975 μF and 210 V for HEK 293T cells. Transfected cells were transferred to a 100-mm petri dish containing 10 ml of complete medium and incubated at 37°C. Unless indicated, transfected cells were harvested at 36 h, and sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was performed with 5% of the total normalized protein lysate.
Immunoprecipitation and Western blotting.
Transfected cells were harvested, washed with ice-cold PBS, and lysed in 0.5 ml ice-cold radioimmunoprecipitation (RIPA) buffer (1% Nonidet P-40 [NP-40], 10 mM Tris [pH 7.5], 2 mM EDTA, 150 mM NaCl, supplemented with protease inhibitors [1 mM phenylmethylsulfonyl fluoride, 1 μg/ml aprotinin, 1 μg/ml pepstatin, and 1 μg/ml leupeptin]). Cell debris was removed by centrifugation at 21,000 × g (10 min and 4°C), and the supernatant was transferred to a fresh microcentrifuge tube. Lysates were then precleared by end-over-end rotation with normal mouse serum and 30 μl of a 1:1 mixture of protein A-protein G-conjugated Sepharose beads (1 h, 4°C). Beads were spun out, and supernatant was transferred to a fresh microcentrifuge tube. The protein of interest was captured by rotating the remaining lysate with 1 μg of appropriate antibody overnight at 4°C. Immune complexes were captured with 30 μl of a 1:1 mixture of protein A and protein G Sepharose beads, pelleted, and washed five times with ice-cold RIPA buffer.
For Western blot assays, input lysates and immunoprecipitated (IP) complexes were boiled in Laemmli buffer (41), fractionated by SDS-PAGE, and transferred to a 0.45-μm nitrocellulose membrane. The membranes were then probed with appropriate antibodies followed by incubation with appropriate infrared-tagged secondary antibodies and viewed on an Odyssey imager (LiCor Inc., Lincoln, NE).
Purification of GST fusion proteins.
Escherichia coli BL21(DE3) cells were transformed with the plasmid constructs for each GST fusion protein. Single colonies were picked and grown overnight in 3 ml of Luria broth. One milliliter of the overnight culture was used to inoculate a 500-ml culture. The larger culture was incubated until the optical density at 600 nm was approximately 0.6, at which point it was induced with 1 mM isopropyl-β-d-thiogalactopyranoside (IPTG) for 5 h. The bacteria were pelleted, washed once with STE buffer (100 mM NaCl, 10 mM Tris, and 1 mM EDTA, pH 7.5), resuspended in 3 ml NETN buffer (0.5% NP-40, 100 mM NaCl, 20 mM Tris, 1 mM EDTA, pH 8.0), supplemented with protease inhibitors, and incubated on ice for 15 min. A volume of 150 μl of 1 M dithiothreitol (DTT) and 1.8 ml of a 10% solution of Sarkosyl in STE buffer was added, and the suspension was sonicated (for 3 min on ice) to solubilize the proteins. The lysate was centrifuged (12,000 × g, 10 min, 4°C) to separate the unsolubilized fraction. The clear supernatant was transferred to a fresh tube, to which 3 ml of 10% Triton X-100 in STE buffer and 200 μl of glutathione-Sepharose beads were added. The tube was rotated overnight at 4°C, after which the purified protein bound to glutathione was collected by centrifugation (2 min, 600 × g, 4°C) and washed five times with NETN buffer supplemented with protease inhibitors. The level of purification was determined by SDS-PAGE, and purified proteins were stored at 4°C.
GST pull-down assays.
For pull-down assays from cell lysates, lysates were prepared in RIPA buffer (0.5% NP-40, 10 mM Tris [pH 7.5], 2 mM EDTA, 150 mM NaCl, supplemented with protease inhibitors). Lysates were precleared and then rotated with either GST control or the appropriate GST fusion protein bound to glutathione-Sepharose beads. For in vitro binding experiments, GST fusion proteins were incubated with 35S-labeled in vitro-translated protein in binding buffer (1× PBS, 0.1% NP-40, 0.5 mM DTT, 10% glycerol, supplemented with protease inhibitors). In vitro translation was done with the T7-TNT Quick Coupled transcription-translation system (Promega Inc., Madison, WI) according to the manufacturer's instructions.
Immunofluorescence.
HEK 293T or U2OS cells were plated on 22- by 22-mm coverslips. Cells were transfected with appropriate plasmids as mentioned elsewhere in the paper using Lipofectamine 2000 (Invitrogen, Carlsbad, CA). At 36 h posttransfection, cells were fixed using 4% buffered formalin (20 min at room temperature [RT]) and washed three times with PBS. BJAB cells or BJAB cells stably expressing EBNA3C were air dried onto slides and fixed using a 1:1 mixture of acetone and methanol at −20°C for 10 min. Fixed cells were blocked and permeabilized with 0.2% fish skin gelatin in 1× PBS containing 0.1% Triton X-100 for 30 min at RT. Flag-tagged Mdm2 was detected using M2 antibody (1:1,000 dilution; Sigma-Aldrich Corp., St. Louis, MO), and EBNA3C was detected using EBNA3C-reactive rabbit polyclonal antibody (1:150 dilution). Endogenously expressed Mdm2 was detected using Mdm2-specific monoclonal antibody SMP14 (1:500 dilution; Santa Cruz Biotechnology, Inc., Santa Cruz, CA). Primary antibodies were diluted in blocking buffer and incubated with the cells for 1 h at RT. Cells were washed three times with blocking buffer and exposed to secondary antibodies. Goat anti-rabbit antibody conjugated to Alexa Fluor 488 and goat anti-mouse antibody conjugated to Alexa Fluor 594 were used to detect EBNA3C and Mdm2, respectively. Secondary antibodies were diluted in blocking buffer at 1:2,000 and incubated for 1 h at RT, followed by three washes with blocking buffer. The last wash contained 4′,6′-diamidino-2-phenylindole (DAPI; Promega, Madison, WI) to counterstain the nuclei.
Stability assay.
Cells were transiently transfected using electroporation with appropriate plasmids expressing HA-tagged Mdm2, Myc-tagged p53, and/or different Flag-tagged EBNA3C species as indicated elsewhere in the paper. At 36 h after transfection, cells were treated with 40 μg/ml cycloheximide (CHX; CalBiochem, Gibbstown, NJ) and lysates were subjected to immunoblot analyses. Band intensities were quantitated using software provided with the Odyssey imager (LiCor Inc., Lincoln, NE).
Real-time quantitative PCR.
Total RNA was isolated by using TRIzol reagent according to the instructions of the manufacturer (Invitrogen, Inc., Carlsbad, CA). cDNA was made by using a Superscript II reverse transcriptase kit (Invitrogen, Inc., Carlsbad, CA) according to the instructions of the manufacturer. Briefly, reverse transcriptase PCR was done in a total volume of 20 μl containing 10 mM Tris-HCl (pH 8.3), 1.5 mM MgCl2, a 200 μM concentration of each deoxynucleotide triphosphate, a 2 μM concentration of each primer, 2 μl of randomly primed cDNA, and 0.5 unit of AmpliTaq (Applied Biosystems, Foster City, CA). The specific primers for mdm2 were 5′-CCGGAATTCATGAGTGTGGAATCTAGTTTGC-3′ (sense) and 5′-ATAAGAATGCGGCCGCGGGGAAATAAGTTAGC-3′ (antisense), yielding a 222-bp PCR product. The glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene was amplified by using the primers 5′-TGCACCACCAACTGCTTAG-3′ (sense) and 5′-GATGCAGGGATGATGTTC-3′ (antisense), yielding a 185-bp PCR product. The target gene was amplified from cDNA by using the SYBR green real-time master mix (MJ Research Inc., Waltham, MA), 1 μM (each) primer, and 1 μl of the cDNA product in a total volume of 20 μl. Thirty-five cycles of 1 min at 94°C, 1 min at 55°C, and 1 min at 72°C, followed by 10 min at 72°C, were performed in an Opticon II thermocycler (MJ Research Inc., Waltham, MA). Each cycle was followed by two plate readings, with the first at 72°C and the second at 85°C. A melting-curve analysis was performed to verify the specificity of the products, and the values for the relative quantitation were calculated by the threshold cycle method. All assays were performed in triplicate.
In vitro deubiquitination assays.
Myc-tagged EBNA3C proteins, either wild type or truncated, or full-length EBNA1 or HAUSP was IP from HEK 293T cell lysates prepared with NP-40 lysis buffer (25 mM Tris-HCl, pH 8.0, 150 mM NaCl, 5 mM EDTA, 10% glycerol, 0.5% NP-40, supplemented with protease inhibitors) from cells that were pretreated for 4 h with 20 μM N-acetyl-Leu-Leu-Nle-CHO (Biomol International, L.P., Plymouth Meeting, PA). IP proteins were washed three times with NP-40 lysis buffer and three times with deubiquitination enzyme (DUB) buffer (50 mM Tris-HCl, pH 7.0, 1 mM DTT), followed by incubation with 2.5 μg of tetraubiquitin (Ub4; Biomol International, L.P., Plymouth Meeting, PA) in 25 μl of DUB buffer overnight at 37°C. Supernatants were fractionated by 15% SDS-PAGE, followed by silver staining (Bio-Rad Laboratories, Hercules, CA) for Ub4 degradation products. IP products were monitored by 10% SDS-PAGE, followed by immunoblotting with a monoclonal antibody against Myc tag epitope (9E10).
In vivo ubiquitination/deubiquitination assay.
HEK 293T cells (15 × 106) were transfected by electroporation (as described above) with appropriate plasmids expressing HA-Ub (5 μg), Flag-EBNA3C 1 to 365 (10 μg), and Flag-Mdm2 (10 μg). For the deubiquitination assay, cells were additionally transfected with either Myc-tagged EBNA3C (10 μg) or other EBNA3C truncated constructs or 10 μg of pA3M-EBNA1 or 10 μg of pCDNA3-myc-HAUSP as indicated. Cells were incubated for 36 h and pretreated for an additional 6 h with 20 μM MG132 (Biomol International) before harvesting. Flag-tagged N-terminal (residues 1 to 365) EBNA3C or Flag-tagged Mdm2 was IP with M2 antibody and resolved by SDS-PAGE. The extent of ubiquitination of Flag-tagged proteins was determined by Western blot analysis using the HA-specific antibody (12CA5).
Labeling with HAUbVME probe.
Lysates (approximately 200 μg) prepared from either BJAB cells or BJAB cells stably expressing EBNA3C were incubated with HAUbVME probe (1 μg/μl) for 2 h at 37°C and subjected to immunoprecipitation with antibody against HA epitope (12CA5). Samples were resolved by SDS-PAGE and transferred to an 0.45-μm nitrocellulose membrane. The membrane was probed with anti-EBNA3C monoclonal antibody (A10). HEK 293T cells were transfected with either 15 μg of EBNA3C expression construct or empty vector. Cells were harvested at 36 h posttransfection and IP with 1.5 μg of M2 antibody against the Flag epitope. IP proteins were incubated with HAUbVME probe (1 μg/μl) for 2 h at 37°C in labeling buffer (50 mM Tris, pH 7.4, 5 mM MgCl2, 250 mM sucrose, 1 mM DTT, 2 mM ATP). Labeled samples were divided into halves, resolved by 7% SDS-PAGE, and subjected to Western blotting with anti-HA antibody for detection of labeled proteins and A10 antibody for detection of EBNA3C. HAUbVME probe was kindly provided by Hidde Ploegh (Whitehead Institute, Boston, MA) (7).
RESULTS
EBNA3C forms a complex with Mdm2 both in vivo and in vitro.
The human homologue of the mouse double-minute 2 (Mdm2, also known as Hdm2) oncogene is overexpressed in more than 40 different types of malignancies, including solid tumors, sarcomas, and leukemias (29, 53). Because of its prevalent expression and its interactions with p53 and other signaling molecules, Mdm2 plays a central role in cancer development and progression. Although there are some conflicting data, the overall evidence suggests that EBV infection can lead to an increase in Mdm2 expression (18).
In order to determine whether EBNA3C is able to form a complex with Mdm2, we performed binding assays using coimmunoprecipitation experiments. HEK 293T cells were cotransfected with expression constructs for Flag-tagged EBNA3C and Mdm2 tagged with an HA epitope. The results demonstrated that EBNA3C strongly associated with Mdm2 (Fig. 1A and B, lane 4). Empty vector was used as negative control (Fig. 1A and 1B, lane 3). To further determine whether this binding occurred under endogenous conditions, Mdm2 was IP from an EBV-negative Burkitt's lymphoma cell line, BJAB, and an EBV-transformed LCL, LCL1, expressing EBNA3C and coimmunoprecipitation of EBNA3C (∼15% of total amount of EBNA3C expression [Fig. 1C]) was monitored by Western blot analysis using A10, an EBNA3C-specific monoclonal antibody (Fig. 1C). Analysis of the data from the ectopic expression system as well as cell lines endogenously expressing Mdm2 and EBNA3C at physiological levels strongly demonstrated an association of Mdm2 with EBNA3C. To further corroborate the association in human cells, an in vitro binding experiment was conducted, where bacterially expressed GST-fused Mdm2 was incubated with cell lysates prepared from either BJAB cells or BJAB cells stably expressing EBNA3C. EBNA3C interacted strongly with GST-Mdm2 but not with the GST control (Fig. 1D). Coomassie blue staining of a parallel gel showed the amount of GST and GST-Mdm2 proteins used in the binding assay (Fig. 1D, right panel). These results indicate that EBNA3C forms a stable complex with Mdm2.
The N-terminal domain of EBNA3C binds to Mdm2.
To map the domain of EBNA3C that interacts with Mdm2, HEK 293T cells were transfected with expression constructs for HA-tagged Mdm2 and either full-length EBNA3C (residues 1 to 992), EBNA3C residues 1 to 365, EBNA3C residues 366 to 620, or EBNA3C residues 621 to 992. All EBNA3C expression constructs were fused in frame with a Flag epitope tag at the carboxy terminus of the protein. The results of these experiments showed that Mdm2 coimmunoprecipitated with full-length EBNA3C as well as the N-terminal domain of EBNA3C (residues 1 to 365) (Fig. 2A, left bottom panel, lanes 2 and 3, respectively). Importantly, the N-terminal domain of EBNA3C (residues 1 to 365) bound to Mdm2 with relatively higher affinity than did the full-length protein itself (Fig. 2A, left bottom panel, compare lanes 2 and 3). No coimmunoprecipitation was detected with vector control (Fig. 2A, left bottom panel, lane 1); the EBNA3C middle region, residues 366 to 620 (Fig. 2A, left bottom panel, lane 4); or the EBNA3C C-terminal region, residues 621 to 992 (Fig. 2A, left bottom panel, lane 5). To further corroborate the in vivo binding data, an in vitro binding experiment was performed using the same constructs expressing different domains of EBNA3C and bacterially expressed GST-Mdm2. The in vitro binding data also exhibited results similar to those of the in vivo binding data (Fig. 2B).
We have previously shown that the EBNA3C amino-terminal domain (especially residues 100 to 200) can bind to a number of important cell cycle-regulatory molecules (3, 35, 37). To further map the interacting domain within the N-terminal region of EBNA3C, in vitro-translated 35S-radiolabeled fragments of EBNA3C (residues 1 to 100, 1 to 129, 1 to 159, and 1 to 200) were tested. In vitro precipitation experiments with bacterially expressed GST-Mdm2 showed strong interaction with residues 1 to 159 and 1 to 200 of EBNA3C (Fig. 2C, bottom panel, lanes 3 and 4, respectively) but not with EBNA3C residues 1 to 100 or 1 to 129 (Fig. 2C, bottom panel, lanes 1 and 2, respectively). All fragments of EBNA3C failed to interact with the GST control, indicating that the observed binding was specific for Mdm2 (Fig. 2C, middle panel, lanes 1 to 4). Different GST-EBNA3C truncated constructs were subsequently used to further refine the association between Mdm2 and EBNA3C. In vitro-translated 35S-radiolabeled full-length Mdm2 showed strong binding with GST-EBNA3C residues 130 to 160 and 160 to 190 (Fig. 2D, top panel, lanes 4 and 5, respectively) but not with the GST control or GST-EBNA3C residues 90 to 130 (Fig. 2C, top panel, lanes 2 and 3, respectively). Coomassie blue staining of a parallel gel showed the levels of the GST proteins used in the binding assay (Fig. 2C, bottom panel). These results indicate that the domain of EBNA3C shown to interact with other cell cycle-regulatory components can also form a complex with Mdm2. This shows that this region of EBNA3C is of particular significance in deregulation of the cell cycle in EBV-infected cells.
The central acidic domain of Mdm2 binds to the N-terminal domain of EBNA3C.
While little is known about the tertiary and quaternary structure of EBNA3C, Mdm2 is well understood structurally and importantly in the context of structure-function relationships. The full-length transcript of the mdm2 gene encodes a protein of 491 amino acids with a predicted molecular mass of 56 kDa, while the SDS-PAGE molecular mass is around 95 kDa due to highly posttranslational modification of the acidic domain (12). This protein contains several conserved structural domains including an N-terminal p53 interaction domain, the structure of which has been solved using X-ray crystallography (40). The Mdm2 protein also contains a central acidic domain (residues 230 to 300). The phosphorylation of residues within this domain appears to be important for regulation of Mdm2 function (5). In addition, this region contains nuclear export and import signals that are essential for proper nuclear-cytoplasmic trafficking of Mdm2 (1). Another conserved domain within the central region of Mdm2 is a zinc finger domain, the function of which is poorly understood. Mdm2 also contains a C-terminal RING domain (residues 430 to 480), which confers E3 Ub ligase activity (60). In an attempt to gain insights into the functionality of the association between Mdm2 and EBNA3C, a number of truncated Mdm2 constructs were designed and tested for their ability to bind EBNA3C by using in vivo binding experiments. The results of the coimmunoprecipitation assay clearly showed that full-length Mdm2 and the central acidic domain strongly associate with EBNA3C (Fig. 3A, bottom panel, lanes 1 and 3, respectively), whereas no binding was observed with the other truncated versions of Mdm2 or with the vector control (Fig. 3A, bottom panel, lanes 2, 4, and 5).
EBNA3C colocalizes with Mdm2 in the same cellular compartment in vivo.
To visualize the interaction of Mdm2 and EBNA3C in an in vivo scenario, colocalization experiments were performed. Flag-tagged Mdm2 and untagged EBNA3C were ectopically expressed in HEK 293T and U2OS cell lines. The results of the immunofluorescence analysis of EBNA3C and Mdm2 showed that they were tightly nuclear and demonstrated a stippled, punctate pattern with the exclusion of nucleoli (Fig. 4A). Mdm2 colocalized with EBNA3C at a number of spots, as visualized by yellow fluorescence. This indicates that these two proteins exist in similar nuclear compartments (Fig. 4A, top and middle panels). To visualize the interaction of these proteins in a more physiological setting, an EBV-positive LCL (LCL1) was used. At these levels of expression in transformed primary B cells, EBNA3C and Mdm2 also displayed a distinct punctate pattern with various foci that colocalized as seen with yellow fluorescence (Fig. 4A, bottom panel). For additional proof, the colocalization study was extended using truncated domains of EBNA3C, the N-terminal domain (residues 1 to 365) and, as a negative control, the middle part (residues 366 to 620), which did not interact with Mdm2 in GST-binding assays or in in vivo coimmunoprecipitation assays. Unlike full-length EBNA3C, the staining for the N-terminal domain, while concentrated in the nucleus, was more diffuse (Fig. 4B, top panel). However, Mdm2 also colocalized with this domain of EBNA3C (Fig. 4B, top panel). In contrast, the central domain of EBNA3C (residue 366 to 620) localized completely in the nucleolus region and showed negligible colocalization with Mdm2 (Fig. 4B, bottom panel). These data corroborate the findings of the studies of in vivo and in vitro association between Mdm2 and EBNA3C, showing that these molecules localized in part to similar compartments in the cell nucleus.
EBNA3C expression leads to stabilization of Mdm2.
Mdm2 is known to be overexpressed in numerous human cancers (29, 53). Elevated levels of nuclear accumulation of Mdm2 protein were reported previously in EBV-induced lymphoproliferation in severe combined immunodeficient (SCID) mice (18). In an attempt to check the Mdm2 protein expression level in the context of EBV infection and its potent nuclear antigen EBNA3C, EBV-transformed B cells (LCL2) and a Burkitt lymphoma cell line, BJAB cells, stably expressing EBNA3C (two different clones, 7 and 10) were tested along with negative-control BJAB cells. As shown in Fig. 5A, the level of Mdm2 expression was significantly increased in EBV-transformed cell line LCL2 (Fig. 5A, middle panel, lane 4) as well as BJAB cells stably expressing EBNA3C (Fig. 5A, middle panel, lanes 2 and 3) compared to the BJAB control cells (Fig. 5A, middle panel, lane 1). The effect of EBNA3C on Mdm2 steady-state levels is not due to changes in transcription, as EBNA3C expression does not alter the level of mdm2 mRNAs in these cells (data not shown). Real-time PCR was used to compare the mRNA levels of mdm2 in BJAB cells, two independent clones of BJAB cells stably expressing EBNA3C (clones 7 and 10), and LCL2.
To determine whether the increase in Mdm2 level was due to stabilization by EBNA3C, transiently cotransfected cells were treated with the proteasome inhibitor MG132. The results showed that the treatment with MG132 (Fig. 5B, middle panel, compare lanes 1 and 3) or the presence of EBNA3C (Fig. 5B, middle panel, compare lanes 1 and 2) led to a significant accumulation (threefold) of Mdm2 compared to that in the lanes showing no treatment or vector control. Additionally, the Mdm2 level was dramatically increased (sevenfold) when Mdm2 was coexpressed with EBNA3C and when cells were treated with MG132 compared to the level in the vector control lane (Fig. 5B, middle panel, compare lanes 1 and 4). Therefore, the increased levels of Mdm2 observed in the presence of EBNA3C in the presence or absence of MG132 may be caused by stabilization of Mdm2 by this viral antigen (Fig. 5B, middle panel, compare lanes 1 and 2). Importantly, the level of EBNA3C in these experiments (with or without MG132) was not affected (Fig. 5B, top panel, lanes 1 and 4), which indicates that EBNA3C itself is stable.
To test directly the effect of EBNA3C expression on Mdm2 stability, HEK 293T cells expressing Mdm2 alone or with EBNA3C were treated with the protein synthesis inhibitor CHX for 1 to 3 h at 36 h posttransfection. Mdm2 levels were determined by Western blot analysis. Immunoblotting against total Mdm2 showed that the stability of Mdm2 protein was significantly enhanced by EBNA3C coexpression (Fig. 5C, right middle panel), whereas in the absence of EBNA3C, Mdm2 was almost completely degraded 2 h after addition of CHX (Fig. 5C, left middle panel). Determination of the relative percentage of Mdm2 remaining showed that the half-life of Mdm2 was increased ∼5-fold with EBNA3C expression (Fig. 5C, right middle panel). The results of these experiments suggest that expression of EBNA3C can stabilize Mdm2 possibly through regulation of its degradation.
The N-terminal domain of EBNA3C is sufficient for stabilization of Mdm2.
Coimmunoprecipitation experiments and in vitro binding assays suggested that the amino terminus of EBNA3C binds to the central acidic domain of Mdm2. To further define the domain or domains of EBNA3C important for Mdm2 stability and also to determine if the binding domain of EBNA3C is essential for Mdm2 stability, the above-mentioned experiments were extended using different truncated domains of EBNA3C. Three EBNA3C truncated mutants were tested; the N-terminal binding region of EBNA3C (residues 1 to 365) showed the strongest ability to increase Mdm2 expression, and the nonbinding middle region of EBNA3C (residues 366 to 620) was the weakest (Fig. 6A, top panel, compare lanes 3, 4, and 5). Quantitation of the Mdm2 bands showed that Mdm2 expression was induced about sixfold by the N-terminal domain of EBNA3C (Fig. 6A, top panel, compare lanes 1 and 3), similar to that seen with wild-type EBNA3C (Fig. 6A, top panel, compare lanes 1 and 2), and twofold by the C-terminally truncated mutant (Fig. 6A, compare lanes 1 and 5). The central domain of EBNA3C had no significant effect on the expression/stabilization of Mdm2 (Fig. 6A, top panel, compare lanes 1 and 4). Incubation with MG132 resulted in further accumulation of Mdm2 in all cases. Moreover, the enhancement was comparable to that seen without MG132 (compare Fig. 6A and B, top panels). GAPDH Western blot analysis (Fig. 6A and B, middle panels) suggested that the changes in Mdm2 levels were not due to differences in total protein levels.
To further confirm that the increase in Mdm2 level with either full-length EBNA3C or the N-terminal region was due to an increase in stability, the half-life of Mdm2 was determined. The Mdm2 degradation rate in the presence of various EBNA3C truncated mutants was determined by CHX treatment as stated above. In the presence of vector control and the central domain of EBNA3C, Mdm2 was rapidly degraded after CHX treatment (Fig. 6C, I and IV, middle panels, respectively). Mdm2 induced by the C-terminal domain of EBNA3C was also rapidly degraded with a half-life of ∼2.0 h, although its expression level was much higher (Fig. 6C, V, middle panel). In contrast, Mdm2 in cells expressing either wild-type EBNA3C or the N-terminal domain was significantly stabilized, with an estimated half-life of over 3 h (Fig. 6C, II and III, middle panels, respectively). These results indicated that the N-terminal binding domain of EBNA3C (residues 1 to 365) was necessary and also sufficient for stabilization of Mdm2.
EBNA3C is a DUB.
Previous studies from our laboratory have shown that EBNA3C interacts with and increases the stability of the c-Myc oncoprotein, although the mechanistic detail was unclear (3). Here we showed that expression of EBNA3C led to stabilization of another oncoprotein, Mdm2. It has also been reported that EBNA3C is remarkably stable in actively growing LCLs (75) and as shown by in vitro pulse-chase analysis (78). It is therefore conceivable that EBNA3C may itself act as a DUB, or it may associate with either cellular or viral DUBs, which provide stability for it and associated cellular partners. Sequence homology analysis predicted that EBNA3C contains two sequence motifs that share similarity with the cysteine and histidine boxes found in the UBP Ub-specific protease subfamily of enzymes with deubiquitinating activity (76). The N-terminal domain of EBNA3C (residues 130 to 160) contains a consensus cysteine box motif, while the consensus histidine box motif is located in the C-terminal region (residues 680 to 710). First, to test whether this viral antigen in fact is a DUB, an in vitro DUB experiment was conducted using Ub4 as a substrate. Wild-type Myc-tagged EBNA3C, EBNA1, and HAUSP (or USP-7) were expressed in HEK 293T cells, IP, and tested for their ability to cleave Ub4 substrate. Both wild-type EBNA3C and HAUSP readily cleaved the tetrameric substrate to its monomer (Fig. 7B, top panel, lanes 2 and 4, respectively), whereas vector control and EBNA1 showed no activity (Fig. 7B, top panel, lanes 1 and 3, respectively), similar to the substrate-alone control (Fig. 7B, top panel, lane 5). As expected, commercially available purified isopeptidase T also cleaved the Ub4 substrate to its monomeric form (Fig. 7B, top panel, lane 6). Previous studies showed that EBNA1 interacted with a DUB, HAUSP (24, 66). However, EBNA1 did not exhibit any activity in our assay system (Fig. 7B, top panel, lane 3), indicating that HAUSP was not coimmunoprecipitated with EBNA1 and served as a negative control in this experiment. On the other hand, EBNA3C showed DUB activity somewhat similar to those of both bona fide deubiquitinases, HAUSP and isopeptidase T (Fig. 7B, top panel, lane 2 compared with lanes 4 and 6).
To gain insights into the residues of EBNA3C responsible for DUB activity, we pursued similar in vitro DUB experiments using different truncated domains of EBNA3C (Fig. 7C). Both the N-terminal domain (residues 1 to 365) containing the consensus cysteine box motif and the C-terminal domain (residues 621 to 992) including the consensus histidine box motif showed DUB activity, though at a considerably lower level than that in wild-type EBNA3C (Fig. 7D, top panel, lanes 3 and 5 compared with lane 2). The middle region (residues 366 to 620) showed no detectable activity (Fig. 7D, top panel, lane 4), indicating that, to obtain full DUB activity, the structural integrity of the full-length EBNA3C is indispensable. These results strongly suggest either that EBNA3C can act as a DUB or that it may associate with DUBs.
A new chemistry-based proteomics approach has allowed demonstration of DUB activity with specific active-site-directed probes against DUBs (7). The active-site-directed probes, which contain an epitope-tagged Ub (HAUb), can covalently modify only active DUBs. To determine whether EBNA3C is a DUB and able to form a covalent complex with the DUB-specific probe, we used the HAUbVME probe, which has broad reactivity toward DUBs (7). Lysates prepared from either BJAB cells or BJAB cells stably expressing EBNA3C were incubated with the HAUbVME probe and subjected to immunoprecipitation with specific monoclonal antibody against the HA epitope. Coimmunoprecipitation of the EBNA3C band (Fig. 7E, compare lanes 3 and 6) in cells with stable expression of this viral antigen strongly supported the possibility that EBNA3C can function as a DUB. For further confirmation, EBNA3C tagged with the Flag epitope was exogenously expressed in HEK 293T cells, IP, and incubated with this active probe. Western blot analysis against HA epitope showed that EBNA3C forms a stable covalent complex with this DUB-specific probe (Fig. 7F, bottom panel, lane 4). No specific band was detected with vector control immunoprecipitation (Fig. 7F, bottom panel, lane 2), indicating the specificity of the experiment.
EBNA3C deubiquitinates itself in a cell-free system and also in human cells.
We previously showed that EBNA3C is ubiquitinated at its N-terminal domain (37). Importantly, the protein turnover rate was not affected in actively proliferating LCLs (75). The deubiquitination activity of EBNA3C led us to test further whether full-length EBNA3C is able to deubiquitinate itself. We first determined whether EBNA3C is able to function as a DUB on itself as the substrate. HEK 293T cells were transfected with Flag-tagged N-terminal EBN3C (residues 1 to 365) along with HAUb. In a separate transfection, cells were transfected with either Myc-tagged full-length EBNA3C or different truncated mutants as indicated (Fig. 8A). Two other proteins, Myc-tagged EBNA1 and HAUSP, were used as negative and positive controls, respectively. Immunoprecipitations were done separately with appropriate antibodies, and IP complexes were mixed and incubated together. Western blot analysis showed, upon incubation with EBNA3C or HAUSP, a dramatic reduction in levels of polyubiquitination of the N-terminal domain of EBNA3C compared to the vector control (Fig. 8A, left top panel, compare lanes 3, 4, and 7). This effect was completely diminished when the enzymatically inactive mutant, i.e., residues 366 to 992 of the UBP consensus cysteine box-deleted mutant EBNA3C, was used instead of wild-type EBNA3C (Fig. 8A, lane 5). Similar to previous results, EBNA1 showed no activity on polyubiquitination of N-terminal EBNA3C, which provided additional evidence for the specificity of this activity. The expression levels of Myc-tagged proteins are shown in Fig. 8B.
To confirm this activity in an in vivo setting, the ubiquitinated Flag-tagged EBNA3C N-terminal domain was IP from HEK 293T cell lysates, expressed with either Myc-tagged full-length or different EBNA3C truncated mutants (Fig. 8C). Similarly, Myc-tagged EBNA1 and HAUSP were also transfected as controls. The in vivo deubiquitination data also showed results similar to the in vitro results above. In addition, the deubiquitination activity of EBNA3C was substantially reduced by replacing the conserved catalytic residue cysteine 143 with asparagine (Fig. 8D, left top panel, compare lanes 3 and 4). These results clearly demonstrated that wild-type EBNA3C expeditiously deubiquitinates polyubiquitinated EBNA3C as a substrate in a cell-free system and in vivo.
EBNA3C deubiquitinates and stabilizes Mdm2 in vivo.
Mdm2 is a short-lived protein, and as a functional E3 ligase, Mdm2 is capable of self-ubiquitination and degradation (19, 25). The enhanced stability of Mdm2 in the presence of EBNA3C prompted us to examine whether EBNA3C deubiquitinates Mdm2 to enhance its stability. An in vivo deubiquitination experiment was set up in which HEK 293T cells were cotransfected with expression constructs for HA-tagged Ub, Flag-tagged Mdm2, and either Myc-tagged full-length EBNA3C or different EBNA3C truncated mutants as indicated (Fig. 9A). Similar to the previous results, full-length EBNA3C also exhibited efficient deubiquitination on Mdm2 (Fig. 9A, left top panel, compare lanes 2 and 3). Neither the truncated domain (residues 1 to 365 containing the consensus cysteine box), the central domain (residues 366 to 620), nor the C-terminal domain (residues 621 to 992, which include the consensus histidine box) of EBNA3C showed deubiquitinating activity toward Mdm2 polyubiquitination (Fig. 9A, left top panel, compare lanes 4, 5, and 6 with lane 2), indicating the specificity of this experiment. However, in the presence of the N-terminal domain of EBNA3C (residues 1 to 365), Mdm2 polyubiquitination is significantly increased (Fig. 9A, left top panel, compare lanes 2 and 4), which is not surprising, as the EBNA3C N-terminal binding domain is probably self-ubiquitinated and is coimmunoprecipitated with Mdm2. In a separate experiment, the catalytically inactive mutant of EBNA3C (C143N) showed no detectable activity (Fig. 9B, left top panel, compare lanes 2 and 4), providing additional supportive evidence.
Previous studies have shown that ubiquitination of many nuclear proteins led to cytoplasmic relocalization (11). It is possible that Ub may serve as a unique and specific signal in the nucleocytoplasmic shuttling of these nuclear proteins. To visualize the deubiquitinating effect of EBNA3C on Mdm2 ubiquitination, a similar immunofluorescence staining strategy was utilized in which U2OS cells were transfected with appropriate constructs as shown in Fig. 9C. In the presence of Ub, immunostaining of Mdm2 showed diffuse cytoplasmic localization with a variable degree of nuclear localization (Fig. 9C, compare third and fourth rows). The nuclear localization pattern of EBNA3C in the presence of Ub was indistinguishable from the pattern where Ub was absent (Fig. 9C, compare first and second rows). Interestingly, coexpression of EBNA3C resulted in a total reduction in cytoplasmic immunostaining of Mdm2 in the presence of Ub (Fig. 9C, compare fourth and fifth rows), suggesting that EBNA3C might have a distinct role in Mdm2 deubiquitination and relocalization. However, coexpression of a catalytically inactive mutant of EBNA3C (C143N) showed no change in Mdm2 relocalization in the presence of Ub (Fig. 9C, compare fourth and sixth), further supporting the above results.
EBNA3C forms a ternary complex with p53 and Mdm2 and facilitates ubiquitination of p53 by Mdm2.
To elucidate the functional relationship between Mdm2 and EBNA3C in regulating p53 activities, we first determined whether EBNA3C can form a ternary complex with Mdm2 and p53. Both p53- and Mdm2-deficient MEF cells (p53−/− Mdm2−/−) were transfected with expression constructs for Flag-tagged EBNA3C, HA-tagged Mdm2, and Myc-tagged p53 as indicated (Fig. 10A). EBNA3C distinctly coimmunoprecipitated p53 and Mdm2 individually (Fig. 10A, lane 2, left bottom panel, and lane 6, left middle panel, respectively). The result also showed that EBNA3C can form a ternary complex with p53 and Mdm2 (Fig. 10A, lane 4, left middle and bottom panels), while the EBNA3C-Mdm2 interaction was significantly reduced by exogenous expression of p53 (Fig. 10A, compare lanes 4 and 6, left middle panel), indicating that the association of EBNA3C with Mdm2 and that with p53 probably share an overlapping domain. In another separate experiment, the interaction among EBNA3C, Mdm2, and p53 was further validated by immunoprecipitation of p53 using BJAB cells and BJAB cells stably expressing EBNA3C (Fig. 10B). These results again suggested that EBNA3C can target both p53 and Mdm2 for deregulating the cellular functions of these proteins. This probably occurs through distinct mechanisms.
We have shown earlier that EBNA3C recruited the SCFSkp2 E3 ligase machinery to target the ubiquitination and degradation of two important cell cycle regulators, p27KIP and pRb (36, 37). To test whether EBNA3C also regulates p53 ubiquitination and stabilization, an in vivo ubiquitination assay and stability assay using CHX treatment was performed in Saos-2 cells. We were unable to find direct enhancement of p53 ubiquitination or its destabilization by EBNA3C (data not shown). However, it is possible that, in stabilizing Mdm2, EBNA3C may indirectly promote the intrinsic E3 Ub ligase activity of Mdm2 on p53. To investigate this possibility, a protein stability assay using CHX and in vivo ubiquitination was conducted by transfecting constructs expressing Myc-tagged p53, EBNA3C, and Flag-tagged Mdm2. For the ubiquitination assay, cells were additionally transfected with an HA-tagged Ub-expressing construct, and subsequently, p53 was IP using anti-Myc antibody to visualize the ubiquitinated forms. The half-life of p53 was significantly shortened when coexpressed with Mdm2 and EBNA3C compared to that in cells which did not express EBNA3C (Fig. 10C, compare third panels from top in left and right columns). As expected, coexpression of Mdm2 increased the ubiquitination of p53 (Fig. 10C, left top and left middle panels, compare lanes 2 and 3). When EBNA3C was expressed with p53 in these cells, it did not alter the ubiquitination levels of p53 (Fig. 10D, left top and left middle panels, compare lanes 2 and 4). However, expression of both EBNA3C and Mdm2 resulted in higher accumulation of ubiquitinated p53 bands than did that of Mdm2 alone (Fig. 10D, left top and left middle panels, compare lanes 3 and 5). Therefore, these results suggested that EBNA3C not only stabilizes Mdm2 through deubiquitination but also can enhance its E3 ligase activity to target p53 for ubiquitination and degradation.
DISCUSSION
Ub-proteasome-dependent proteolysis is a key mechanism for regulating the activity of proteins critically involved in cell growth, and disrupting this pathway has profound consequences for malignant transformation (23). The posttranslational modification of proteins by the covalent linkage of Ub targets those proteins for degradation by the proteasome. This process engages the involvement of both ubiquitinating enzymes and DUBs (73). Although DUBs comprise a large family in the Ub-proteasome system, their biological functions and pathophysiological roles remain largely unknown and are only just beginning to be understood. It is becoming clearer that a number of proteins regulating cellular mechanisms for homeostasis in all eukaryotes are controlled not only by phosphorylation and dephosphorylation but also by ubiquitination and deubiquitination.
A prominent demonstration of this concept is the deubiquitination activity exhibited by EBNA3C, which is capable of efficiently deubiquitinating itself. It has also been earlier reported that EBNA3C has cell cycle-deregulatory functions, apparently mediated by direct protein-protein interactions (35, 36, 37). Recently, we demonstrated that EBNA3C targets numerous cell cycle-regulatory components such as Rb and p27 (36, 37) for their destabilization by recruiting the E3 Ub ligase complex machinery (SCFSkp2) and also by induction of self-ubiquitination at the N-terminal domain (37). EBNA3C has also been found to interact with and to be degraded in vitro by the purified 20S proteasome complex (75). However, no indication of proteasome-mediated degradation has been detected in actively growing LCLs (75). In another report, West also demonstrated similar results using pulse-chase analysis (78). The mechanistic reasons for the stability of this viral antigen after being ubiquitinated are still unclear. It is possible that in EBV-infected cells, EBNA3C forms a complex with cellular DUB, or it may itself act as a DUB that offers protection from its proteolysis. Despite the controversy regarding the different possibilities for EBNA3C stability, it is clear that in order to deregulate the entire mammalian cell cycle, EBNA3C potentially manipulates the Ub-proteasome machinery. We have shown recently that, in contrast to destabilizing proteins (36, 37), EBNA3C also stabilizes the cellular oncoprotein c-Myc, although the molecular mechanism by which this occurs is still not clear (3). Here we report that, in addition to deubiquitinating itself, EBNA3C can also efficiently deubiquitinate Mdm2, an oncoprotein which is known to be overexpressed in many cancers (29, 53). Mdm2 is also overexpressed in certain tumors with wild-type p53 (29), suggesting that it may contribute to tumor development by inactivation of p53. However, Mdm2 also has p53-independent activities that may play a role in malignant transformation (28, 47). In addition to deregulating p53 activity, Mdm2 has been shown to interact with and inactivate the retinoblastoma (Rb) tumor suppressor protein (79). Furthermore, it can also modulate the activity, stability, and apoptotic function of E2F1/DP1 transcription factors (4, 46, 49). Therefore, Mdm2 can enhance cellular transformation by both p53-dependent and -independent mechanisms.
Our studies show that EBNA3C forms a complex with Mdm2. In vitro binding assays showed that EBNA3C directly interacts with Mdm2, and it also forms a stable complex in vivo. EBNA3C associates with Mdm2 via the same domain, residues 130 to 190, that has been suggested to bind many components important to the cell cycle (3, 35, 37). Our results also demonstrate that EBNA3C forms a ternary complex with p53 and Mdm2 (Fig. 11), although in the presence of p53 the association of Mdm2 with EBNA3C was significantly reduced. This suggests that the association of EBNA3C with Mdm2 and p53 probably shares an overlapping domain and that the binding affinity of p53 toward EBNA3C is greater than the affinity for Mdm2.
Studies regarding the deubiquitinating activity of EBNA3C began with the observation that cotransfection with an EBNA3C-expressing construct significantly accelerated Mdm2 expression compared to the vector control. Further, our studies show that the binding domain of EBNA3C is sufficient to stabilize Mdm2. The participation of EBNA3C with Mdm2 and p53 in the ternary complex, combined with our finding that EBNA3C blocks proteasomal degradation of Mdm2, prompted us to investigate the possibility that EBNA3C is involved in recruiting Mdm2 E3 ligase activity for accelerated ubiquitination and subsequent turnover of p53. Our results indeed show that both ubiquitination and destabilization of p53 are accelerated in the presence of the EBNA3C-Mdm2 complex. Recent studies have shown, however, that the RING finger domain of Mdm2, where the Ub E3 ligase activity resides, is necessary but not sufficient for p53 ubiquitination (31). The central acidic domain acts as an additional essential contributor, apart from the RING finger domain of Mdm2 (31). The contribution of the Mdm2 acidic domain to the regulation of Mdm2-mediated p53 degradation has been extensively studied. Two tumor suppressors, ARF and Rb, interact with this acidic domain and stabilize p53 (26, 58, 67, 81). In contrast, binding of the transcriptional coactivator p300 to the acidic region stimulates Mdm2-mediated p53 degradation (21). There are other proteins that bind to the Mdm2 internal region and that could regulate p53 and Mdm2 turnover, including the ribosomal protein L5 (17, 48), TATA-binding protein (43), and the recently identified Mdm2 binding protein (8). In agreement with these studies, our results also show that EBNA3C binds to this acidic domain, which positively regulates Mdm2-mediated p53 ubiquitination.
Recently, a death-domain-associated protein (DAXX), together with HAUSP, has been demonstrated to be critically involved in reducing Mdm2 ubiquitination and thereby promoting enhancement of p53 ubiquitination and degradation in unstressed conditions (71). In EBV-infected cells EBNA3C may function in a similar manner, and this is currently under investigation in our lab. Interestingly, a number of recent studies have suggested a complicated role of HAUSP in regulation of both p53 and Mdm2 (44). HAUSP has been found to interact with p53, leading to its deubiquitination. However, the ablation of HAUSP expression resulted in p53 accumulation as well as a noticeable reduction in Mdm2 expression. This indicates that HAUSP has a key function in regulating Mdm2 stability (52). Studies have also shown that HAUSP is targeted by one of the EBV latent antigens, EBNA1, for lowering the levels of p53 (24, 66). It would be extremely interesting to investigate the further possibility of HAUSP involvement in the complex regulatory role of EBNA3C for Mdm2 and p53 stability in EBV-infected cells.
In summary, our data provide the first evidence that EBNA3C can function as a DUB which efficiently deubiquitinates itself both in vitro and in vivo. Additionally, we also show that EBNA3C binds and deubiquitinates an important cellular proto-oncogene, Mdm2, which contributes to its stability and cellular accumulation. This facilitates p53 ubiquitination and degradation, although it remains to be clarified whether degradation of p53 is dependent on its binding to EBNA3C (Fig. 11). These findings lead us to speculate that the complex regulation of p53-Mdm2 functions by EBNA3C serves to augment the efficiency of EBV-mediated lymphomagenesis. This study is a significant step toward new insights in our understanding of the importance of EBNA3C in the development of EBV-associated cancers and effective therapies.
Acknowledgments
We thank George Mosialos, Aart G. Jochemsen, Wafik S. El-Deiry, and Xiaolu Yang for generously providing reagents. We express our gratitude to Hidde Ploegh for providing the HAUbVME probe.
The project is supported by NCI grant CA137894-01 to E.S.R. E.S.R. is a scholar of the Leukemia and Lymphoma Society of America.
Footnotes
Published ahead of print on 25 February 2009.
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