TABLE 3.

Full-likelihood estimates of the relative recombination rate (r_LAMARC = c/μ, where c is the recombination rate per site per generation and μ is the neutral mutation rate per site per generation) for Daphnia species

	Locus	rLAMARC	95% support intervals
D. pulexa	Overall	0.5876	0.4635, 0.7355
	atp-ep	0.6073	0.1620, 1.3777
	cbp-EF	1.8671	0.7719, 2.5429
	rab4	0.2511	0.0356, 0.6833
	tif	1.1069	0.4869, 1.7404
D. pulicariaa	Overall	0.7476	0.3933, 1.0892
	atp-ep	0.5929	0.1831, 1.4095
	cbp-EF	0.2854	0.0408, 0.9592
	rab4	0.2700	1 × 10−9, 1.4572
	tif	0.9507	0.4631, 1.8675
D. obtusab	Overall	0.2383	0.0892, 0.5367
	atp-ep	8 × 10−6	1 × 10−11, 0.1782
	cbp-EF	1.2634	0.3737, 2.9458
	tif	0.1623	1 × 10−9, 0.8932
D. ambiguac	tif	0.2929	0.0483, 0.8701
D. magnac	tif	0.7611	0.1793, 2.0246

Ninety-five percent support intervals are shown for r_LAMARC. r_LAMARC could not be estimated for D. arenata or D. mendotae because all loci lacked sufficient numbers of variable sites.

The following loci were not included for LAMARC analyses because they did not have >10 variable sites:

^acsf and g3pdh

^bcsf, g3pdh, and rab4

^cg3pdh.