Abstract
DNA probes for the rapid identification of Nocardia asteroides were obtained by constructing a genomic library of strain GUH-2 in the lambda cloning vector EMBL3. Of 50 recombinant clones tested, 2 were identified that hybridized with 31% of the N. asteroides strains in a reference collection without cross-hybridization with related members of the Actinomycetales. Additional libraries were then generated from selected strains of N. asteroides that had failed to hybridize with any of the GUH-2 clones. Four additional clones were obtained from these strains which, when pooled, provided DNA probes specific for all of the N. asteroides strains tested.
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- Angeles A. M., Sugar A. M. Identification of a common immunodominant protein in culture filtrates of three Nocardia species and use in etiologic diagnosis of mycetoma. J Clin Microbiol. 1987 Dec;25(12):2278–2280. doi: 10.1128/jcm.25.12.2278-2280.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Angeles A. M., Sugar A. M. Rapid diagnosis of nocardiosis with an enzyme immunoassay. J Infect Dis. 1987 Feb;155(2):292–296. doi: 10.1093/infdis/155.2.292. [DOI] [PubMed] [Google Scholar]
- Beaman B. L., Burnside J., Edwards B., Causey W. Nocardial infections in the United States, 1972-1974. J Infect Dis. 1976 Sep;134(3):286–289. doi: 10.1093/infdis/134.3.286. [DOI] [PubMed] [Google Scholar]
- Beaman B. L., Moring S. E. Relationship among cell wall composition, stage of growth, and virulence of Nocardia asteroides GUH-2. Infect Immun. 1988 Mar;56(3):557–563. doi: 10.1128/iai.56.3.557-563.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Beaman L., Paliescheskey M., Beaman B. L. Acid phosphatase stimulation of the growth of Nocardia asteroides and its possible relationship to the modification of lysosomal enzymes in macrophages. Infect Immun. 1988 Jun;56(6):1652–1654. doi: 10.1128/iai.56.6.1652-1654.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Butler W. R., Kilburn J. O., Kubica G. P. High-performance liquid chromatography analysis of mycolic acids as an aid in laboratory identification of Rhodococcus and Nocardia species. J Clin Microbiol. 1987 Nov;25(11):2126–2131. doi: 10.1128/jcm.25.11.2126-2131.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Clarke L., Carbon J. A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome. Cell. 1976 Sep;9(1):91–99. doi: 10.1016/0092-8674(76)90055-6. [DOI] [PubMed] [Google Scholar]
- Drake T. A., Hindler J. A., Berlin O. G., Bruckner D. A. Rapid identification of Mycobacterium avium complex in culture using DNA probes. J Clin Microbiol. 1987 Aug;25(8):1442–1445. doi: 10.1128/jcm.25.8.1442-1445.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dretzen G., Bellard M., Sassone-Corsi P., Chambon P. A reliable method for the recovery of DNA fragments from agarose and acrylamide gels. Anal Biochem. 1981 Apr;112(2):295–298. doi: 10.1016/0003-2697(81)90296-7. [DOI] [PubMed] [Google Scholar]
- Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem. 1983 Jul 1;132(1):6–13. doi: 10.1016/0003-2697(83)90418-9. [DOI] [PubMed] [Google Scholar]
- Fourche J., Capdepuy M., Texier-Maugein J. Gas chromatographic fatty acid determination to differentiate Nocardia asteroides, Mycobacterium fortuitum and Mycobacterium chelonei. J Chromatogr. 1989 Jan 27;487(1):142–146. doi: 10.1016/s0378-4347(00)83016-9. [DOI] [PubMed] [Google Scholar]
- Frischauf A. M., Lehrach H., Poustka A., Murray N. Lambda replacement vectors carrying polylinker sequences. J Mol Biol. 1983 Nov 15;170(4):827–842. doi: 10.1016/s0022-2836(83)80190-9. [DOI] [PubMed] [Google Scholar]
- Karn J., Brenner S., Barnett L., Cesareni G. Novel bacteriophage lambda cloning vector. Proc Natl Acad Sci U S A. 1980 Sep;77(9):5172–5176. doi: 10.1073/pnas.77.9.5172. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Karn J., Brenner S., Barnett L. New bacteriophage lambda vectors with positive selection for cloned inserts. Methods Enzymol. 1983;101:3–19. doi: 10.1016/0076-6879(83)01004-6. [DOI] [PubMed] [Google Scholar]
- Kiehn T. E., Edwards F. F. Rapid identification using a specific DNA probe of Mycobacterium avium complex from patients with acquired immunodeficiency syndrome. J Clin Microbiol. 1987 Aug;25(8):1551–1552. doi: 10.1128/jcm.25.8.1551-1552.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Leder P., Tiemeier D., Enquist L. EK2 derivatives of bacteriophage lambda useful in the cloning of DNA from higher organisms: the lambdagtWES system. Science. 1977 Apr 8;196(4286):175–177. doi: 10.1126/science.322278. [DOI] [PubMed] [Google Scholar]
- Mizuguchi Y., Tokunaga T. Method for isolation of deoxyribonucleic acid from mycobacteria. J Bacteriol. 1970 Nov;104(2):1020–1021. doi: 10.1128/jb.104.2.1020-1021.1970. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Palmer D. L., Harvey R. L., Wheeler J. K. Diagnostic and therapeutic considerations in Nocardia asteroides infection. Medicine (Baltimore) 1974 Sep;53(5):391–401. doi: 10.1097/00005792-197409000-00005. [DOI] [PubMed] [Google Scholar]
- Pier A. C., Fichtner R. E. Serologic typing of Nocardia asteroides by immunodiffusion. Am Rev Respir Dis. 1971 May;103(5):698–707. doi: 10.1164/arrd.1971.103.5.698. [DOI] [PubMed] [Google Scholar]
- Presant C. A., Wiernik P. H., Serpick A. A. Factors affecting survival in nocardiosis. Am Rev Respir Dis. 1973 Dec;108(6):1444–1448. doi: 10.1164/arrd.1973.108.6.1444. [DOI] [PubMed] [Google Scholar]
- Ridell M. Immunodiffusion studies of some Nocardia strains. J Gen Microbiol. 1981 Mar;123(1):69–74. doi: 10.1099/00221287-123-1-69. [DOI] [PubMed] [Google Scholar]
- Roberts M. C., McMillan C., Coyle M. B. Whole chromosomal DNA probes for rapid identification of Mycobacterium tuberculosis and Mycobacterium avium complex. J Clin Microbiol. 1987 Jul;25(7):1239–1243. doi: 10.1128/jcm.25.7.1239-1243.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tsukamura M. Numerical analysis of the taxonomy of Nocardiae and Rhodococci. Microbiol Immunol. 1982;26(12):1101–1119. doi: 10.1111/j.1348-0421.1982.tb00260.x. [DOI] [PubMed] [Google Scholar]
- Wallace R. J., Jr, Steele L. C., Sumter G., Smith J. M. Antimicrobial susceptibility patterns of Nocardia asteroides. Antimicrob Agents Chemother. 1988 Dec;32(12):1776–1779. doi: 10.1128/aac.32.12.1776. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Welcher A. A., Torres A. R., Ward D. C. Selective enrichment of specific DNA, cDNA and RNA sequences using biotinylated probes, avidin and copper-chelate agarose. Nucleic Acids Res. 1986 Dec 22;14(24):10027–10044. doi: 10.1093/nar/14.24.10027. [DOI] [PMC free article] [PubMed] [Google Scholar]

