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. Author manuscript; available in PMC: 2010 Feb 19.
Published in final edited form as: Org Lett. 2009 Feb 19;11(4):899–902. doi: 10.1021/ol802844z

Synthesis of Amidines Using N-Allyl Ynamides. A Palladium-Catalyzed Allyl Transfer Through an Ynamido-π-Allyl Complex

Yu Zhang 1, Kyle A DeKorver 1, Andrew G Lohse 1, Yan-Shi Zhang 1, Jian Huang 1, Richard P Hsung 1,*
PMCID: PMC2683379  NIHMSID: NIHMS91595  PMID: 19199763

Abstract

graphic file with name nihms91595f5.jpg

A de novo transformation of N-allyl-N-sulfonyl ynamides to amidines is described featuring a palladium-catalyzed N-to-C allyl transfer via ynamido-palladium-π-allyl complexes.


Our involvement in the studies of Huisgen’s azide-[3 + 2]13 cycloadditions employing ynamides47 led us to an exciting possibility. As shown in Scheme 1, under copper(I)-catalyzed conditions,8 while triazolyl copper intermediates 1 could be trapped with electrophiles other than proton to afford more substituted triazoles 2,9,10 when R2 = Ts, it could also readily lose N2 in a retro-[3 + 2] manner to give ynamido-copper complexes 3a in equilibrium with ketenimine-copper complexes 3b. A series of elegant studies have since appeared reporting nucleophilic trappings of 3 in both inter- and intramolecular fashion, leading to amidines and amidates.1114 The potential of harvesting new reactivities from ynamido-metal complexes captured our attention. Consequently, we examined a different pathway that can provide general access to ynamido-metal π-allyl complexes 5a and 5b from N-allyl-N-sulfonyl ynamides 4. We report here a de novo synthesis of pharmacologically useful amidines1518 from ynamides featuring a palladium-catalyzed N-to-C allyl transfer through ynamido-π-allyl complexes.

Scheme 1.

Scheme 1

Generating Ynamido-Metal Complexes.

While identifying a suitable palladium catalyst for our intended reaction pathway was not difficult, we found two amidine products. As shown in Table 1, when treating N-allyl-N-sulfonyl ynamide 6 with 5 mol% of Pd(PPh3)2Cl2 in the presence of c-hex-NH2 in THF at 65 °C, both amidines 7 and 8 were observed.19 Intriguingly, the ratio of 7 and 8 depended upon the amount of c-hex-NH2 that was used. A greater amount of c-hex-NH2 [3–5 equiv] predominantly led to the formation of 7 in which the allyl group is lost [entries 1 and 2], while 1.0 equiv of c-hex-NH2 and/or addition with the use of syringe pump began to favor the formation of 8 in which the allyl group had undergone an N-to-C transfer [entries 3 and 4].

Table 1.

Effect of Equivalents of Amines and Pd(0) Sources.

graphic file with name nihms91595t1.jpg

entry graphic file with name nihms91595t2.jpg Inline graphic [mol %] amine equiv time [h] yield [%]a 7 8
1 Pd(PPh3)2Cl2 -- 5.0 2 92 5
2 -- 3.0 2 63 24
3 -- 1.0 2 44 45
4 -- 1.0: syringe pump addition 2 11 73
5 Pd(PPh3)4 -- 3.0 3 0 ≥95
6 Pd(dppe)Cl2 -- 3.0 48 30 <5
7 Pd(dppf)Cl2 -- 3.0 24 95 0
8 Pd2(dba)3 Inline graphic [10.0] 3.0 24 40 59
9 Pd2(dba)3 Inline graphic [10.0] 3.0 3 0 ≥95
10 Pd2(dba)3 Inline graphic [10.0] 3.0 24 <5 95
graphic file with name nihms91595t3.jpg
a

All are isolated yields.

Moreover, a quick screening of palladium sources revealed that the allyl transfer is catalyst dependent [Table 1]. At 3.0 equiv of c-hex-NH2 in comparison with Pd(PPh3)2Cl2 [see entry 1], Pd(PPh3)4 gave exclusively allyl transferred amidine 8 [entry 5], while P d(dppe)Cl2 and Pd(dppf)Cl2 [entries 6 and 7] reverted back to favor amidine 7 with Pd(dppf)Cl2 giving a better yield [entry 7]. Sensing that these contrasts could be due to the differences either in the initial oxidation state of the palladium metal, or more likely, their respective ligands, we examined Pd2(dba)3 along with 10 mol% of various phosphine ligands. While BINAP was not useful [entry 8, potential ee was not analyzed], we found that both xantphos20 and X-phos21 [entries 9 and 10] represent excellent ligand systems for promoting the allyl transfer, with the former phosphine ligand [see entry 9] providing a much faster reaction.

The generality of this allyl transfer could be established very quickly via three perspectives, leading to the synthesis of a diverse array of amidines. First, we employed a range of primary amines including allyl amine [entry 3 in Table 2], propargyl amine [entry 4], and anilines [entries 5–9]. Secondly, we examined a series of secondary amines including the use of p-Ns-substituted ynamide [see 20 in Figure 1], indoline [see 26], tetrahydroquinoline [see 27], and imidazole [see 28].

Table 2.

Amidine Synthesis Using Primary Amines.a

entry primary amines 4-pentenyl-amidines yield [%]b
1 graphic file with name nihms91595t4.jpg graphic file with name nihms91595t5.jpg 9 ≥95
2 10 90
3 graphic file with name nihms91595t6.jpg graphic file with name nihms91595t7.jpg 11 73
4 graphic file with name nihms91595t8.jpg graphic file with name nihms91595t9.jpg 12 76
5 graphic file with name nihms91595t10.jpg graphic file with name nihms91595t11.jpg 13 67
6 14 85c
7 15 78d
8 16 54
9 graphic file with name nihms91595t12.jpg graphic file with name nihms91595t13.jpg 17 52
a

All reactions utilized ynamide 6, 5.0 mol % Pd(PPh3)4, 1.0 equiv K2CO3, 3.0 equiv RNH2, THF [conc = 0.05 M], 65 °C, 5–8 h.

b

Isolated yields.

c

1.0 equiv of amine was used.

d

Reaction time was 24 h.

Figure 1.

Figure 1

Secondary Amines in the Amidine Synthesis.a,b

a. Reaction conditions: 5.0 mol % Pd2(dba)3, 10.0 mol % of xantphos, 1.0 equiv K2CO3, 3.0 equiv R2NH, THF [conc = 0.05 M], 65 °C, 1.5–6 h. b. Isolated yields. c. 10.0 mol % Pd2(dba)3, 20.0 mol% of xantphos, and 5.0 equiv R2NH were used. d. The only successful example in using 5.0 mol % Pd(PPh3)4.

Thirdly, we explored ynamides 29a–e with variations on the acetylenic substituent [Table 3]. It is noteworthy that while Pd(PPh3)4 was effective in promoting allyl transfer when using primary amines, it was not useful for secondary amines [with the exception of 22] and only the usage of Pd2(dba)3 and xantphos led to allyl transferred amidines.

Table 3.

Ynamide Substituent Effect.

graphic file with name nihms91595t14.jpg
entry ynamides R1 = amidines NR2 = isolated yield [%]
1 29a TBDPS 30a pyrrolidinyl 95
2 29b TBS 30b pyrrolidinyl 94
3 29c TES 30c pyrrolidinyl 87
4 29d (CH2)3OTBS 30d c-hex-NH 41
5 29e c-hex 30e pyrrolidinyl 54
6 29e c-hex 30f c-hex-NH 69

A proposed model consistent with our observations is shown in Scheme 2. While all evidence points toward the presence of ynamido-P d-π-allyl complexes 5a in equilibrium with the ketenimine complex 5b through an oxidative addition,22,23 the pathway clearly diverged thereafter depending upon the concentration of the amine HNR2 and the nature of the ligand. We believe the first equivalent of HNR2 effectively gave the amidinyl Pd-π-allyl complexes 31a and 31b via nucleophilic addition to 5b. An ensuing reductive elimination of 31a and/or 31b would lead to respective allyl transferred amidines 32a and 32b, and 32a appears to tautomerize favorably to 32b.

Scheme 2.

Scheme 2

A Proposed Mechanistic Model.

However, this reductive elimination step appears to be less favored when an excess of amine was used. Consequently, Pd-complexes 33 could be attained likely through a direct nucleophilic attack on the Pd-π-allyl motif, thereby leading to the loss of the respective allyl amines,24 and ultimately, the formation of the non-allyl transferred amidines 34 after reductive elimination. In addition, this de-allylative pathway is also consistent with the fact that when using the more nucleophilic secondary amines [relative to primary amines]25 and P d(PPh3)4, non-allyl transferred amine product predominated. Consequently, in all cases, either a controlled amount of HNR2, or a slow addition of HNR2, or more bulky ligands such as X-phos21 and/or bidentate ligands with unique bite angles such as xantphos20,26 that presumably promote reductive elimination could be employed to favor the formation of allyl transferred amidines 32b.

Finally, the efficacy of oxidative addition likely plays a role in the distribution between non-allyl and allyl transferred amidines because the choice of Pd(0) source appears to be critical. Specifically, a Pd(II) source could also serve as π-Lewis acid to activate the ynamide, leading to keteniminium Pd-complex 35 [Scheme 3]. After addition of the first equivalent of HNR2, de-allylation of the resulting N-allyl enamide 36 could take place with a second equivalent of HNR2. This process could be promoted by either Pd(0) or Pd(II), with the former initiating an oxidative addition while the latter again serving to activate the ketene-aminal motif. This assessment is consistent with the observation that non-allyl transferred amidines 34 were the major product when using Pd(II) sources.

Scheme 3.

Scheme 3

Pd(II) Versus Pd(0) Source.

We have described here a de novo transformation of N-allyl-N-sulfonyl ynamides to a diverse array of amidines featuring a palladium-catalyzed N-to-C allyl transfer via ynamido-palladium-π-allyl complexes. Efforts in further developing synthetic methods involving these ynamido-palladium-π-allyl complexes are underway.

Supplementary Material

1_si_001. Supporting Information Available.

Experimental procedures as well as NMR spectra, and characterizations are available for all new compounds and free of charge via Internet http://pubs.acs.org.

2_si_002

Acknowledgement

We thank NIH [GM066055] for funding.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

1_si_001. Supporting Information Available.

Experimental procedures as well as NMR spectra, and characterizations are available for all new compounds and free of charge via Internet http://pubs.acs.org.

2_si_002

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