Table 2.
Section | ORF 1 | Size range (aa) | Identity (%) | pI | TMH motifs | Homology |
A | 620 | 618–624 | 25–89 | 5–7.5 | 2 | TrbE |
A | 311 | 222–312 | 15–83 | 9–10 | 0–1 | |
A | 780 | 660–780 | 19–88 | 5–7 | 1 | Signal peptide protein |
A | 617 | 507–622 | 21–89 | 5–10 | 10–12 | |
A | 86b/138 | 86/138 | 17–68 | ~9 | 3 | |
A | 1044 | 1025–1044 | 33–91 | 8–9 | 2 | TraG |
153 | 153–166 | 17–100 | ~10 | |||
196 | 192–253 | 48–100 | ~10 | |||
C | 102 | 102–108 | 25–100 | 4.5–7.5 | ||
C | 106 | 99–165 | 64–99 | ~5 | RepA | |
C | 62 | 61–72 | 52–96 | ~5 | CopG | |
C | 87 | 87–92 | 51–89 | ~10 | Leucine zipper | |
C | 98 | 83–101 | 20–100 | ~10 | ||
419 | 419–458 | 41–93 | ~10 | 4 pING1/0 others | Integrase | |
77 | 73–99 | 46–96 | 10–11 | plrA |
1 ORF numbers are from the pKEF9 genome. ORF153 is 100% conserved in pKEF9, pING1, pARN3 and pARN4.