Function and regulation of phospholipid signalling in plants

Abstract

As an important metabolic pathway, phosphatidylinositol metabolism generates both constitutive and signalling molecules that are crucial for plant growth and development. Recent studies using genetic and molecular approaches reveal the important roles of phospholipid molecules and signalling in multiple processes of higher plants, including root growth, pollen and vascular development, hormone effects and cell responses to environmental stimuli plants. The present review summarizes the current progress in our understanding of the functional mechanism of phospholipid signalling, with an emphasis on the regulation of Ins(1,4,5)P₃–Ca²⁺ oscillation, the second messenger molecule phosphatidic acid and the cytoskeleton.

BACKGROUND

Membranes act as barriers to hydrophilic molecules and ions because of the hydrophobic core of the phospholipid bilayer [1]. Phospholipid molecules are one of the main structural components of membranes, and they have emerged as important second messengers [2] to regulate plant growth and development and cellular responses to environmental change or stress [3].

Phosphorylations of the inositol ring of phosphatidylinositol are carried out by specific phosphoinositide kinases, including PI3Ks (phosphoinositide 3-kinases) [4], PI4Ks (phosphoinositide 4-kinases) [5] and PI5Ks (phosphoinositide 5-kinases) [6] at the D-3, D-4 or D-5 positions to generate PtdIns3P, PtdIns4P or PtdIns5P respectively. Sequential phosphorylation by phosphoinositide 4-phosphate 5-kinase [7] or phosphoinositide 5-phosphate 4-kinase [8] will generate PtdIns(4,5)P₂, which is then hydrolysed by PLC (phospholipase C), resulting in the production of two important second messenger molecules: Ins(1,4,5)P₃ and DAG (diacylglycerol) [2]. The inositol polyphosphates can be phosphorylated to generate InsP₆ or dephosphorylated by inositol polyphosphate phosphatases, which are classified into four groups on the basis of the position of the phosphates [9]. In addition, PLD (phospholipase D) hydrolyses phospholipids at the terminal phosphodiester bond and generates PA (phosphatidic acid) [10] (Figure 1).

Figure 1. The phosphoinositide metabolic pathway in higher plants.

The isoform numbers of the key enzymes in Arabidopsis (At) and rice are indicated. Abbreviations: PI, phosphoinositide; PI5K, phosphoinositide 5-kinase.

The presence of many isoforms of the key enzymes in phosphoinositide metabolism has been demonstrated. Some 12 PI3/4K-domain-containing proteins are predicted to be PI4K genes [11], and there are 15 isoforms of PIP5Ks (phosphoinositide phosphate 5-kinases) [11], 15 isoforms of 5PTases (inositol polyphosphate 5-phosphatases) [12], 12 PLD isoforms [13], 12 PI4K isoforms [10] and nine PLC isoforms [10,14] in Arabidopsis. In rice, a monocotyledon, the distribution and functions of relevant isoforms have been less studied. An analysis showed that there are 17 PLD members [15] and four PLC members [14] in rice. Our preliminary analysis using BLAST and CLUSTW shows that there are ten PIP5Ks, 11 PI4Ks and 20 5PTase members in rice (Figure 1).

In the present review, we focus on the functions and mechanisms of PIP5K, PLC, 5PTase, PLD and the phospholipid molecules PtdIns4P, PtdIns(4,5)P₂, Ins(1,4,5)P₃ and PA, as well as Ca²⁺, in plant growth and development.

CRITICAL EFFECTS OF PHOSPHOLIPIDS IN PLANT GROWTH AND STRESS RESPONSES

Root growth and root hair patterning

Mutation in XIPOTL1, which encodes a PEAMT (S-adenosyl-L-methionine:phosphoethanolamine N-methyltransferase) and is critical in phosphatidylcholine biosynthesis, resulted in a short primary root and short epidermal cells due to the cell death induced by decreased phosphatidylcholine content [16]. Arabidopsis lines with a deficiency of INT1 (INOSITOL TRANSPORTER 1) show increased intracellular myo-inositol concentrations and reduced root growth, which is possibly due to sequestration of inositol in vacuoles [17]. Arabidopsis PIP5K9 negatively regulates sugar-mediated root cell elongation through interaction with a cytosolic invertase, CINV1 [18]. Conversely, suppressed AtIPK2α (Arabidopsis thaliana inositol polyphosphate kinase 2α) expression and application of exogenous Ins(1,4,5)P₃ lead to enhanced root growth [19].

Seedlings treated with the PLD inhibitor butan-1-ol or deficient in PLDζ2 display suppressed primary root elongation and inhibited lateral root formation [20], and PLD-derived PA production is an early signalling event during adventitious root formation induced by auxin and NO in cucumber explants [21]. In addition, accumulated PtdIns(4,5)P₂ and Ins(1,4,5)P₃ under SAC9 deficiency result in shorter primary roots and fewer lateral roots [22]. PA takes part in root growth, root hair and pollen tube patterning by regulating cytoskeleton and vesicle trafficking [20,21,23] (Figure 2).

Figure 2. PA functions in hormone responses and growth of roots, root hairs and pollen tubes.

PA accumulates in response to treatment with auxin and NO, wounding, freezing, nutrient starvation, elicitor, xylanase, and osmotic stress. PA could bind CTR1 and block the interaction with ethylene receptor ETR1 to regulate the ethylene response. PA binds and decreases the activity of ABI1, resulting in the insensitive response to ABA treatment. PA promotes actin polymerization by binding to and inhibiting the activity of AtCP. PA regulates cycling of PIN proteins through directly mediating vesicle trafficking, or binding and mediating the activity of auxin transport upstream proteins PDK1, PINOID and PP2A. Abbreviations: CTR1-K, CTR1 kinase domain; PH, pleckstrin homology domain.

Regarding the root hair pattern, a deficiency of AtSfh1, which encodes a PITP (phosphatidylinositol transfer protein), compromises polarized root hair expansion in a manner that coincides with a loss of tip-directed PtdIns(4,5)P₂ [24]. Decreased AtIPK2α and PLDζ1 expression confers insensitivity of root hair growth to calcium depletion [19] and leads to random initiation of root hairs [25] respectively, whereas increased PLDζ1 expression induces branched and swollen root hairs [25]. Treatment with a PI3K-specific inhibitor inhibits root hair growth by regulating PtdIns3P-mediated vesicle trafficking and ROS (reactive oxygen species) production [26]. The double mutant PI4Kβ1/PI4Kβ2 displays aberrant root hair morphologies due to altered calcium signalling [27], whereas mutation in a phosphoinositide 4-phosphate phosphatase gene (rhd4) results in shorter and morphologically aberrant root hairs due to the altered accumulation of PtdIns4P together with PI4Kβ1 in membrane compartments [28]. Studies by two independent groups have shown that Arabidopsis PIP5K3 is essential for root hair formation through its production of PtdIns(4,5)P₂ at the root hair apex. Furthermore, reduced expression of PIP5K3 caused significantly shortened root hairs, whereas overexpression resulted in increasingly deformed root hairs [29,30]. In Medicago truncatula, inhibition of PI3K and PI-PLC (phosphatidylinositol-specific PLC) prevented root hair curling and the formation of infection threads [31].

Pollen development

Phospholipid signalling is involved in pollen development, including pollen viability, germination and pollen tube elongation, through regulation of the production of PtdIns3P, PtdIns4P, PtdIns(3,5)P₂, PtdIns(4,5)P₂, PA, Ins(1,4,5)P₃ and downstream [Ca²⁺]_cyt levels. Studies reveal that PI3K and PI4K are involved in regulation of pollen viability through different mechanisms. PI3K regulates vacuole reorganization and nuclear division in pollen grains, possibly by regulating the products PtdIns3P and PtdIns(3,5)P₂, which are essential for protein targeting to vacuoles and normal vacuole function and morphology respectively [32], whereas PI4Kγ1 performs crucial intracellular trafficking regulation for tapetum and microspore development [33]. In addition, PtdIns(4,5)P₂ leads to increased [Ca²⁺]_cyt, transient growth perturbation and inhibition of apical secretion, whereas Ins(1,4,5)P₃ treatment causes a transient [Ca²⁺]_cyt increase of similar magnitude and stimulates apical secretion and severe growth perturbation, indicating the different targets of these two molecules [23]. Recent reports have shown that deficiency of two Arabidopsis pollen-expressed PIP5Ks, PIP5K4 and PIP5K5, reduced pollen germination and pollen tube elongation, which is consistent with the effect of their product, PtdIns(4,5)P₂ [34,35]. However, overexpression of either PIP5K4 or PIP5K5 results in multiple pollen tip branching, which is thought to occur by regulating membrane trafficking and apical pectin secretion [34,35].

PA plays an important role in pollen tube polarity by regulating microfilament polymerization and membrane transport. A reduced level of PA leads to inhibited apical plasma membrane recycling and formation of thick, but non-directional, microfilaments [23]. PLD-derived PA stimulates pollen germination and tube elongation [36] and expands the pollen tube apical region [37] (Figure 2).

In addition, because both PtdIns(4,5)P₂ and DAG are accumulated in an apical domain of the plasma membrane at the pollen tube tips, disruption of this domain causes defective pollen tube growth, which highlights the importance of maintaining an apical domain enriched in PtdIns(4,5)P₂ and DAG for polar cell growth [38].

Vascular development

Although several studies have demonstrated the role of phospholipid signalling in vascular growth and development, the mechanism is still unclear. CVP2, encoding a type I inositol polyphosphate 5-phosphatase 6 (At5PTase6), promotes vascular cell proliferation and prevents the termination of premature veins (the cvp2-knockout mutant shows an open cotyledon vein [39]). The type II At5PTase13 regulates cotyledon vein formation by regulating auxin homoeostasis [40]. FRA3, a type II 5PTase gene, plays an essential role in secondary wall synthesis in fibre cells and xylem vessels, and the fra3-knockout mutant contains higher amounts of PtdIns(4,5)P₂ and Ins(1,4,5)P₃ and shows reduced thickness of the secondary wall and decreased stem strength owing to the disruption in actin organization [41]. AtSAC1 exhibits phosphatase activity toward PtdIns(3,5)P₂, and mutation of AtSAC1 causes a dramatic decrease in the cell wall thickness of fibre cells and vessel elements, resulting in a weak stem [42], suggesting the important effect of the PtdIns(3,5)P₂ pool in the formation of aberrant cell shape.

Hormone effects

Altered phospholipid signalling shows changed responses to various hormones. Seedlings deficient in 5TPase1, 5PTase2 [43] and cvp2 [39] are hypersensitive to exogenous ABA (abscisic acid), whereas a deficiency in 5PTase13 causes insensitivity to ABA in seed germination [40]. PA, generated by PLDα1, binds to ABI1 and decreases the phosphatase activity of ABI1, resulting in the insensitivity of stomatal closure of PLDα1-null mutant leaves to ABA treatment [44] (Figure 2). In addition, PLDα1 directly interacts with and inactivates the G_α subunit of heterotrimeric G-proteins to mediate ABA inhibition of stomatal opening [45], and suppression of rice PLDβ1 results in reduced sensitivity to ABA in seed germination [15].

Ins(1,4,5)P₃ oscillation mediates auxin transport and is involved in gravistimulation responses [46]. Arabidopsis 5PTase13 and PLDζ2 regulate the cotyledon vein [40] and root development [20] respectively by modulating auxin synthesis and transport. PLA activity is rapidly induced by auxin within 2 min [47], and Arabidopsis sPLA2 regulates shoot gravitropism by regulating auxin-induced cell elongation [48].

Besides auxin and ABA, involvement of phospholipid signalling in other hormone cascades is seldom reported. Testerink et al. [49] demonstrated that PA regulates CTR1 activity to influence ethylene signalling. Lin et al. [50] pointed out that phospholipid signalling could be regulated by multiple hormones, hinting at the cross-talk between them.

Stress responses

The involvement of phospholipid signalling in the cell responses to stress stimuli, including salt, osmotic, temperature and pathogen stressors, has been well demonstrated, and multiple members of the phosphoinositide pathway are supposed to mediate the stress responses through different mechanisms.

Salt stress

Salinity is a major stress that threatens plant growth and crop production. Arabidopsis plants show rapidly increased PtdIns(4,5)P₂ synthesis in response to treatments with NaCl, KCl and sorbitol [51], suggesting an important role of PtdIns(4,5)P₂ in plant salt tolerance. PtdIns(4,5)P₂ and its derivative Ins(1,4,5)P₃ are accumulated in plants under salt, cold and osmotic stresses, and sac (suppressor of actin) mutants harbour accumulated PtdIns(4,5)P₂ and Ins(1,4,5)P₃ and show a constitutive stress response [22]. Consistent with this, pharmacological studies using U73122 (a specific inhibitor of PLC) have shown that, in salt-treated seedlings, PLC activity, as well as Ins(1,4,5)P₃ and calcium, are necessary for the expression of pyrroline-5-carboxylate synthetase and resultant pyrroline levels [52].

Recent studies revealed that salt-stress-induced association of PtdIns(4,5)P₂ with clathrin-coated vesicles [53] and PI3K-mediated endocytosis are necessary for plant salt tolerance [54], highlighting the importance of vesicle trafficking in the salt response. Multiple PLDs, including PLDα1, α3, δ and ε, are required for salt and water deficit tolerance in Arabidopsis, possibly by regulating PA production and membrane lipid compositions [55,56].

Drought stress

Drought directly leads to water deficiency and inhibits plant growth. Studies have shown that members of both PLC and PLD families are involved in drought tolerance. Expression of maize ZmPLC1 (Zea mays PLC1) is up-regulated under dehydration and this enhanced expression improves the drought tolerance of maize [57]. Expression pattern analysis revealed that six of nine Arabidopsis PLC genes are stimulated by dehydration [14], suggesting a similar function of Arabidopsis PLCs to that of ZmPLC1. PLDs and the derived PA are also widely involved in plants' drought tolerance. Both PLDα1 and PLDα3 are necessary for drought tolerance in Arabidopsis [58]; however, the regulatory mechanisms are different. PLDα1 mediates early drought response and ABA signalling [59], whereas PLDα3 is involved in promoting root growth and stress avoidance under hyperosmotic conditions [55]. PLDδ is accumulated under dehydration and contributes to the dehydration-induced PA accumulation [60], whose knockout mutants display hypersensitivity to water deficit [56]. Recently, Perera et al. [61] showed that Arabidopsis transgenic plants overexpressing mammalian type I 5PTase present significantly enhanced drought tolerance.

Cold stress

A transcriptomic analysis of cold-treated Arabidopsis suspension cells in the presence of U73122 or ethanol, the inhibitors for PLC and PLD respectively, revealed that both PLC- and PLD-mediated signal pathways are activated simultaneously, which leads to the activation of different clusters of cold-response genes [62]. Genetic analysis reveals that different PLD isoforms have opposite effects in cold response. Arabidopsis plants that are deficient for PLDα1 show improved tolerance to freezing through activating the cold-responsive genes and increasing osmolyte accumulation [63,64], whereas deficiency of the membrane-associated PLDδ rendered hypersensitivity to freezing (PLDδ overexpression resulted in increased freezing tolerance [65]). Suppression of PLDα1 decreases phospholipid hydrolysis and PA production in both freezing and post-freezing phases, whereas ablation of PLDδ increases lipid hydrolysis and PA production in post-freezing recovery [66]. Chilling and freezing result in the increased Ins(1,4,5)P₃–Ca²⁺ influx [67] and transgenic plants overexpressing mammalian 5PTase display a ∼30% decrease in the rapid transient Ca²⁺ peak in response to cold or salt stimuli [61].

Oxidative stress

H₂O₂ treatment activates the PLD activity, and deficiency of PLDδ displays hypersensitivity to H₂O₂-induced cell death, suggesting a crucial role of PA in H₂O₂-induced cell death [68]. This is consistent with the fact that PA could trigger an oxidative burst through activating a MAPK (mitogen-activated protein kinase) cascade [69] and indicates PA as a possible important regulator of Rop-regulated ROS generation to mediate the process of cell death [70]. In addition, PI3K can stimulate plasma membrane endocytosis and produce ROS, subsequently inducing root hair curling [31].

Other stress

Wounding triggers a rapid activation of PLD-mediated phospholipid hydrolysis. The Ca²⁺ increase upon wounding mediates the translocation of PLD protein from cytosol to membrane [71]. Multiple members of PLD are activated by wounding, and suppression of PLDα by an antisense approach decreases the wound-induced expression of LOX2 (lipoxygenase 2), suggesting that LOX2 is probably a downstream target through PLD-mediated production of jasmonic acid [72]. MAPK signalling is activated by wounding in soya bean seedlings, and wound-induced activation of MAPK signalling is suppressed when PA production is inhibited with n-butanol, which indicates that PA acts as a second messenger in wound-induced MAPK signalling [73]. In addition, PLDζ2 plays a key role in phosphate cycling, and pldζ2 mutants exhibit hypersensitivity to phosphate starvation [74,75]. PLDε regulates the root surface area to improve the nitrogen uptake and utilization [76].

Besides abiotic stress, phospholipid signalling is also regulated by biotic stress. The AVR4 (avirulence 4) gene encodes an elicitor protein and displays resistance in tomato plants carrying the Cf-4 resistance gene to the fungus Cladosporium fulvum. In response to the infection, PA is rapidly produced in a few minutes when AVR4 interacts with Cf-4, indicating that the PA accumulation is an early response in the Cf-4–AVR4 interaction [77].

Others

In addition to the above-mentioned developmental processes and stress responses, phospholipid signalling is involved in embryo development, stomata closure, and light and sugar signal transduction. Deficiency of PECT (phosphorylethanolamine cytidylyltransferase), a rate-limiting enzyme in phosphatidylethanolamine biosynthesis, results in embryo abortion before the octant stage, delays embryo maturation and reduces seed fertility [78]. Deficiency of LPAT (lysophosphatidyl acyltransferase), which is responsible for PA biosynthesis, caused embryo lethality (arrested embryo at the globular stage [79]).

The Arabidopsis 5PTase13 deficiency mutant (5pt13) displays shorter hypocotyls under blue light [80]. Mutants 5pt1 and 5pt2 grow faster and have elongated hypocotyls in the dark [43]. The ITPK-1 (inositol 1,3,4-trisphosphate 5/6-kinase) knockout mutant is hypersensitive to red light, similar to the csn (COP9 signalosome) mutant [81]. In addition, PtdIns(4,5)P₂ and Ins(1,4,5)P₃-mediated Ca²⁺ oscillation are important for stomatal opening [82,83]. Arabidopsis 5PTase13 regulates SnRK1 (sucrose non-fermenting-1-related kinase) activity, which differs according to nutrient availability, and deficiency of 5PTase13 results in a shortened root under no-nutrient or low-nutrient conditions and is less sensitive to sugar and insensitive to ABA [84].

The altered growth patterns of the loss-of-function knockout mutant and transgenic lines with overexpression or decreased expression of phospholipid signalling-related genes are summarized in Table 1.

Table 1. Altered growth of loss-of-function knockout mutants (KO) and transgenic lines with overexpression (OE) or decreased expression (DE) of phospholipid signalling-related genes.

Unless indicated otherwise, results are from Arabidopsis.

Gene	Protein	Type	Phenotype	Reference(s)
VSP34	PI3K	KO	Short root hairs, and decreased pollen viability, germination and pollen tube growth	[26,32]
PI4Kβ1/PI4Kβ2	PI4Kβ1, PI4Kβ2	KO	(Double mutant) Aberrant root hair morphology	[27]
PI4Kγ1	PI4Kγ1	KO	Decreased pollen viability, abnormal tapetum and microspore development	[33]
RHD4	PI4P phosphatase	KO	Short and morphologically aberrant root hairs	[28]
PIP5K3	PIP5K3	DE	Shorter root hair	[29,30]
		OE	Deformed root hair
PIP5K4	PIP5K4	KO	Reduced stomatal opening, and impaired pollen germination, tube growth and polarity	[34,35,82]
		OE	Perturbed pollen tube growth, multiple pollen tip branching
PIP5K5	PIP5K5	OE	Multiple pollen tip branching	[34]
PIP5K9	PIP5K9	OE	Shortened primary root	[18]
SAC1 (fra7)	SAC domain phosphoinositide phosphatase 1	KO	Weak stem, decreased cell wall thickness	[42]
SAC9	SAC domain phosphoinositide phosphatase 9	KO	Shorter primary root and fewer lateral roots	[22]
DAD1	PLA1	KO	Defects in anther dehiscence, pollen maturation and flower opening	[85]
AtsPLA2β	AtsPLA2β	DE	Shortened leaf petioles and stems, delayed light-induced stomatal opening	[48,86]
		OE	Prolonged leaf petioles and inflorescence stems, faster stomatal opening
AtPLC1	AtPLC1	DE	Insensitive to ABA in seed germination and growth	[87]
ZmPLC1	ZmPLC1	OE	Improved drought tolerance	[57]
NtPLC3	NtPLC3	OE	Inhibited pollen tube growth	[38]
OsPLDβ1	OsPLDβ1	KO	Reduced sensitivity to ABA during seed germination	[15]
PLDα1	PLDα1	KO	Decreased wound-induced synthesis of jasmonic acid, decreased drought tolerance, enhanced seed quality after storage, insensitive response of stomatal closure to ABA, enhanced sensitivity to high salinity, increased freezing tolerance	[56,58,64,65,72,88]
PLDα3	PLDα3	KO	Increased sensitivities to salinity and water deficiency, later flowering in drought conditions	[55]
		OE	Decreased sensitivities to salinity and water deficiency, earlier flowering in drought conditions
PLDε	PLDε	KO	Decreased root growth and biomass accumulation, decreased lateral root elongation	[76]
		OE	Increased root growth and biomass accumulation, increased lateral root and root hair elongation
PLDδ	PLDδ	KO	Increased sensitivity to H2O2-induced cell death, sensitive to freezing	[68,89]
		OE	Increased freezing tolerance
PLDζ1	PLDζ1	OE	Branched and swollen root hairs	[25]
		DE	Random initiation of root hairs
PLDζ1/PLDζ2	PLDζ1, PLDζ2	KO	(Double mutant) Hypersensitive to phosphate deficiency in root growth	[74,75]
PLDζ2	PLDζ2	KO	Suppressed primary root elongation and inhibited lateral root formation, less sensitive to auxin, reduced root gravitropism	[20]
		OE	Enhanced primary root growth, root gravitropism, hypersensitive to auxin.
5PTase1/5PTase2	5PTase1, 5PTase2	KO	(Double mutant) Faster germination and longer hypocotyl in the dark, hypersensitive to ABA	[43]
5PTase5	5PTase5	KO	Disrupted root-hair tip growth	[90]
CVP2	5PTase6	KO	Open reticulum and increased free vein endings	[39]
5PTase11	5PTase11	KO	Slower germination and decreased hypocotyl growth when grown in the dark	[91]
FRA3	5PTase12	KO	Dramatic reduction in secondary wall thickness and a concomitant decrease in stem strength	[41]
5PTase13	5PTase13	KO	Defect in development of the cotyledon vein, shortened hypocotyls and expanded cotyledons under blue light, hypersensitive to sugar and ABA in seed germination	[40,80,84]
Itpk-1	ITPK-1	KO	Decreased hypocotyl length under red light	[81]
OsITL1	OsITPK1	OE	(In tobacco) Decreased tolerance to NaCl during germination and seedling development.	[92]
ATS2	LPAAT (lysophosphatidic acid acyltransferase β)	KO	Embryo lethality	[79]
XIPOTL1	PEAMT	KO	Short primary root and induced cell death	[16]
PECT	PECT	KO	Embryo abortion before the octant stage, delayed embryo maturation and reduced seed fertility	[78]
INT1	INT1	KO	Reduced root length	[17]
AtSfh1	PITP	KO	Short root hairs	[24]

REGULATION OF PHOSPHOLIPID SIGNALLING

Regulation of key enzymes and molecules in phosphoinositide signalling by hormones and environmental stimuli

Studies of expression patterns of genes encoding key enzymes in phosphoinositide signalling employing DNA chip technology and RT (reverse transcription)–PCR reveal that the expression of multiple enzymes is widely and differentially regulated by various hormones and abiotic stressors, especially in the families of PIPK (phosphoinositide phosphate kinase), PLD and 5PTase [50]. Of nine Arabidopsis PLC genes, four are induced by salt, three are induced by ABA, four respond to cold, and six are stimulated by dehydration [14]. Arabidopsis PLD is activated by various hyperosmotic stresses, including high salinity [93], dehydration [60] and freezing [63,65], as well as ABA [44]. Similarly, many rice PLD genes are induced by salt and drought stress [15]. PIP5K family genes are reported to be stimulated by water stress and ABA [50,59,94] and repressed by cold [18]. In addition, the plant hormone auxin is broadly related to phosphoinositide signalling, inducing the expression of AtIPK2β [95] and PLDζ2 [20], and suppressing the expression of 5PTase13 [40].

Some phospholipid molecules, such as PA, PtdInsP and PtdIns(4,5)P₂, are accumulated after treatment with auxin, NO [21], wounding [72,96], freezing [63], nutrient starvation [74,97], elicitor [98], xylanase [99] or under osmotic stress [100].

Ins(1,4,5)P₃-mediated Ca²⁺ oscillation

PtdIns(4,5)P₂ throughout the membrane establishes the basis for rapid and transient increases of Ins(1,4,5)P₃ in response to environmental stimuli, which leads to the rapid oscillation of Ca²⁺. Many studies have shown that Ins(1,4,5)P₃-mediated Ca²⁺ influx is important for plant cell growth (Figure 3). In cvp2 mutants, the Ins(1,4,5)P₃ levels increase approx. 3-fold compared with wild-type, and Ins(1,4,5)P₃ releases Ca²⁺ from internal stores to tightly control the number of ground-to-procambial cell transitions and to regulate the vein formation [39]. The 5pt13 mutant has a higher Ins(1,4,5)P₃ level compared with wild-type and mediates the effects of blue light through Ins(1,4,5)P₃-mediated Ca²⁺ oscillations [80].

Figure 3. The Ca²⁺ oscillation, mediated by PtdIns(4,5)P₂ and Ins(1,4,5)P₃, is crucial for multiple processes of plant growth including root tropism, root hair formation, cotyledon vein development, photomorphogenesis, guard cell closure, pollen tube elongation and hormone effects.

Gravistimulation induced differential lateral IAA (indoleacetic acid) transport, which is consistent with the changed Ins(1,4,5)P₃ levels in maize and oat pulvini [46]. Previous studies have shown that the level of Ins(1,4,5)P₃ increases approx. 3-fold in the first 5 min of gravistimulation, and the second peak of Ins(1,4,5)P₃ appears by 15–20 min [101]. After 30 min, the Ins(1,4,5)P₃ level returns to baseline [101], indicating that the oscillation of Ins(1,4,5)P₃ is a key component of the response to gravity stimuli.

Environmental stimuli also evoke a transient increase of Ins(1,4,5)P₃ levels, leading to the following question: is the long-term increase or decrease of the Ins(1,4,5)P₃ levels associated with cell growth? The shorter hypocotyls of the 5pt13 mutant under blue light provide evidence that a higher Ins(1,4,5)P₃ level, and hence increased [Ca²⁺]_cyt under blue light irradiation, regulates cell growth [80]. Similarly, in maize pulvini, the inositol lipids' rate of turnover is associated with an increase in membrane biogenesis and Ins(1,4,5)P₃–Ca²⁺ release from internal stores to initiate cell growth upon gravistimulation [102].

The PtdIns(4,5)P₂–Ca²⁺ gradient plays a key role in pollen tube growth [103] and root hair formation [24]. Because Ins(1,4,5)P₃–Ca²⁺ influx across the plasma membrane is required to maintain the Ca²⁺ gradient in the pollen tube cell and Ins(1,4,5)P₃-sensitive Ca²⁺ channels have not been identified [10], it was speculated that the function of Ca²⁺ influx was a direct result of Ins(1,4,5)P₃ in pollen tube growth [38]. When PtdIns(4,5)P₂ and Ins(1,4,5)P₃ were loaded into an Agapanthus pollen tube, Ins(1,4,5)P₃ was more effective than PtdIns(4,5)P₂ [23], indicating that Ins(1,4,5)P₃–Ca²⁺ and PtdIns(4,5)P₂–Ca²⁺ are spatially different. PtdIns(4,5)P₂–Ca²⁺ is increased in both apical and sub-apical regions, whereas Ins(1,4,5)P₃–Ca²⁺ is increased mainly in sub-apical regions [23], indicating that both PtdIns(4,5)P₂ and Ins(1,4,5)P₃ cause transient increases in Ca²⁺ levels; however, the effects are markedly different.

Transient and rapid increase in intracellular Ca²⁺ have been demonstrated in response to abiotic stresses, including cold, salt and osmotic stress [104,105], and Ins(1,4,5)P₃-mediated Ca²⁺ oscillation is also involved in the response to these stimuli.

In addition, Ca²⁺ is important for the effects of phospholipids and activity of relevant enzymes. The interaction of the PLD C2 domain with Ca²⁺ is stimulated by phospholipids [106], and Ca²⁺ sensitivities of different PLD isoforms vary from the micromolar to the millimolar range [10,107,108]. Increased [Ca²⁺]_cyt evokes conformational changes in PLDs to assist with the recruitment of substrate PtdIns(4,5)P₂ [109]. Additionally, enzymatic activity of PLC is regulated by Ca²⁺ through binding with the EF-hand motif of PLC [110], and PLA2s are classified as Ca²⁺-dependent or -independent members [2].

Cross-talk with hormone signalling

Auxin transporters is regulated by phosphorylation, and PINOID plays a fundamental role in the asymmetrical localization of membrane proteins during polar auxin transport by regulating the polarity of PIN's apical-basal localization [111]. Interestingly, PDK1 (phosphoinositide-dependent kinase 1) enhances PINOID activity and is involved in polar auxin transport regulation [111]. Both PDK1 and PINOID can bind to PA, PtdIns3P, PtdIns(3,4)P₂ and PtdIns(4,5)P₂ through the PH (pleckstrin homology) domain [111,112]. PP2A (protein phosphatase 2A) and PINOID act antagonistically on mediating PIN apical-basal polar localization [113] and PP2A can bind to PA [114]. In addition, PLDζ2 and product PA are required for the normal cycling of PIN2-containing vesicles to maintain auxin transport, and the deficiency of PLDζ2 results in suppressed sensitivity to auxin and reduced root gravitropism [20]. These findings suggest that membrane phospholipid turnover is important for regulating polar auxin transport (Figure 2).

Recently several studies revealed the crucial functions of phospholipids in vesicular trafficking. The trafficking of auxin efflux carrier PIN2 protein is dependent on SNX1 (sorting nexin 1)-containing endosomes which are sensitive to the PI3K inhibitor wortmannin [115]. SNX1 co-localizes with PtdIns3P-enriched membrane subdomains, and is a candidate downstream effector of PI3K because of the presence of phosphatidylinositol-binding PX (phox homology) domain of SNX1 [116]. During the regulation of turnover of auxin transporters, PIN2 is targeted to the vacuole for degradation, and the trafficking of PIN2-containing vacuolar depends on the phosphatidylinositol pathway [116]. Wortmannin affects the recycling of vacuolar sorting receptors between the PVC (prevacuolar compartment) and the TGN (trans-Golgi network) [116–118] and whose treatment inhibits the trafficking and degradation of PIN2, and increases the total PIN2 protein level in membrane [116]. Such cross-talk prompts us to ask questions. Do the membrane compositions affected by phospholipids influence the localization of membrane protein PINs? Do phospholipids serve as mediators to recruit the proteins to membrane sites and to promote signal transduction? Although the current studies suggest that the latter speculation may be the case, the relevant mechanisms are still unclear.

At5PTase13 regulates the expression of CYP83B1, which is important for auxin homoeostasis [40], and overexpression of AtIPK2β leads to more axillary shoot branching and an IAA-related phenotype by mediating the transcription of the IAA-related genes CYP83B1, PIN4, MAX4 and SPS [95].

Only PA was reported to bind CTR1 (constitutive triple response 1), which negatively regulates ethylene responses in Arabidopsis [119] to disrupt the intramolecular interaction between the CTR1 kinase domain and the CTR1 N-terminal regulatory domain to inhibit its kinase activity [49] (Figure 2).

Regulation through PA

PA, the simplest membrane phospholipid, has emerged as a new class of lipid mediator involved in various cellular processes, such as signal transduction, membrane trafficking, secretion and cytoskeletal rearrangement [10]. Cellular PA is generated mainly via two routes: DGK (DAG kinase) phosphorylating DAG or PLD hydrolysing structural phospholipids. In plants, PA serves as a second messenger and is triggered in response to various biotic and abiotic stresses, including pathogen infection [77,120], drought, salinity, wounding, cold, cell death [68,70,98] and oxylipin production [71–73]. The PA signal production is fast (minutes) and transient.

PA plays a role in the ABA response during stomatal movement and seed germination. PLDα1-derived PA binds to ABI1, a negative regulator of the ABA response, and inhibits its activity to promote stomata closure [44]. T-DNA (transferred DNA) insertional mutants of PA catabolic enzyme LPP (lipid phosphate phosphatase), lpp2-1 and lpp2-2, are hypersensitive to ABA during germination due to the increase in PA levels [121].

Regarding the roles of PA in the abiotic stress response, it is suggested that PA produced by high PLDα1 activity destabilizes the membrane and increases membrane leakage, whereas a regulated increase of plasma membrane PA by PLDδ may produce signalling PA species that mitigate stress damage [63,65]. The PA level increases during chilling and cold acclimatization, as well as in response to freezing [63,122], and the results of microarray analysis imply that PA produced from the PLD and PLC/DGK pathways are involved in two different pathways in cold responses [62]. Osmotic stress also induces the rapid accumulation of PA [60,123], which may be involved in regulation of proline biosynthesis [124]. Studies using soya bean cells show that PA can bind MAPK6-related protein, an important mediator in stress and ethylene signalling, suggesting a different mechanism of PA involvement in the stress response [125] (Figure 2). Furthermore, the PA-interacting/binding proteins should be studied in more detail to illustrate the downstream mechanisms.

Regulation through cytoskeleton

Both the actin and microtubular cytoskeletons can be regulated by phospholipids and participate in regulating the tip growth of the root hair and pollen tube. PtdIns(4,5)P₂, Ins(1,4,5)P₃, PA and the related PI3K, PI4K and PIP5K are involved in the organization of actin filaments; the microtubular cytoskeleton is mainly modulated by PLD.

Phospholipids play an integral role in regulating the structure and dynamics of the cytoskeleton through interaction between PtdIns(4,5)P₂ and many actin-binding proteins, including profilin, gelsolin, α-actin, cofilin, filamin and vinculin [126–130]. It has been shown that PtdIns(4,5)P₂ controls the dynamic organization of F-actin (filamentous actin) through regulating profilin, a G-actin (globular actin)-binding protein [131], and actin remodelling in root hairs and pollen tubes, sites of rapid growth in plants, is sensitive to alterations of PtdIns(4,5)P₂ biosynthesis. Expression of mutant Arabidopsis Rac2 in tobacco pollen tubes decreases the plasma membrane PtdIns(4,5)P₂ and disrupts the normal actin filament orientation [132]. Arabidopsis PIP5K1, which synthesizes PtdIns(4,5)P₂ in vivo, interacts directly with actin and recruits PI4Kβ1 to the actin cytoskeleton [133]. Although it has not been confirmed, Stenzel et al. [30] speculated that the regulation of membrane-associated PIP5K3 in root hair elongation might relate to the control of F-actin (Figure 4).

Figure 4. Phospholipids participate in the tip growth of the root hair and pollen tube through regulating actin and microtubule cytoskeletons.

PtdIns(4,5)P₂ is synthesized on the plasma membrane and assembles a number of endocytic accessory proteins to induce the antigen-stimulated endocytosis. PIP5K1 and PtdIns(4,5)P₂ interact directly with actin and recruit PI4Kβ1 to actin. PtdIns(4,5)P₂ interacts and suppresses the activity of actin-binding proteins, including severing proteins, capping proteins, ABPs (actin-binding proteins: fimbrin, villin, profilin), and induces the activity of α-actin to regulate actin remodelling. PA turnover from DAG is the substrate for PLD which is involved in microtubule reorganization. Ins(1,4,5)P₃–Ca²⁺ oscillation regulates the activity of actin-binding proteins to participate in actin remodelling. Abbreviations: PC, phosphatidylcholine; PE, phosphatidylethanolamine.

The PLC-mediated PtdIns(4,5)P₂ turnover also affects the actin structure and normal pollen growth [38,134]. Elevation of intracellular PtdIns(4,5)P₂ [through photolysis of caged PtdIns(4,5)P₂] leads to the perturbation of apical morphology and the appearance in this region of a fine cortical mesh of microfilaments [23].

PA promotes actin polymerization by binding to and inhibiting the activity of AtCP, an actin-capping protein [135]. Arabidopsis PLDβ1 can bind directly to actin, and the activity of PLD is, in turn, regulated by the actin cytoskeleton [136]. AtSAC1 and FRA3, which encode PtdIns(3,5)P₂ phosphatase and 5PTase respectively, are both required for actin organization and cell wall synthesis [41,42]. Deficiency of AtSfh1, a PITP-encoding gene, results in arrested root hair pattern formation by altering both actin and the microtubular cytoskeleton [24]. A recent study shows that both PtdIns3P and PtdIns4P modulate actin filament organization in guard cells of day flowers [137].

The involvement of the microtubular cytoskeleton in phospholipid signalling is mediated by PLD. Treatment with the PLD inhibitor butan-1-ol disrupts cortical microtubule organization in soya bean cells and fucoid alga [138,139] and promotes microtubule depolymerization and release from the plasma membrane in Arabidopsis [140]. Unlike in mammalian cells, cortical microtubules lie beneath the plasma membrane in plant cells, and PLD is postulated to be the linker [141].

Others

Other kinds of regulation of phospholipids and relevant key proteins also exist. PLD activity, with the exception of ζ-class PLDs, is dependent on calcium, whereas β-, γ- and ζ-class PLDs require PtdIns(4,5)P₂ for in vitro activity [142]. A recent study shows that aluminium ions inhibit PLD in a microtubule-dependent manner [143]. The activity of AtPIP5K1 is inhibited by phosphorylation through protein kinase A [144]. In addition, the MORN motifs in OsPIPK1 (Oryza sativa PIPK1) and the highly charged region of OsPI4K2 are involved in the regulation of subcellular localization and substrate binding [145,146]. The WD40 domain of 5PTase13 interacts with SnRK1 and acts as a positive regulator of SnRK1 activity to stabilize the protein and suppress its degradation [84].

CONCLUSIONS AND PERSPECTIVES

Substantial evidence demonstrates that phospholipid signalling plays an important role in various aspects of plant growth and development, stress response and hormone signalling, and extensive progress has been made toward understanding the regulation and function of phospholipid molecules and related enzymes.

It has been noted that several gene families involved in phospholipid signalling contain more than ten isoforms in Arabidopsis, including PIP5K, PLD and 5PTase, and isoforms in the same family have distinct expression patterns and may have specific functions. The precise analysis of the expression patterns in specific tissues, at different developmental stages and under different stimulations of individual isoforms will facilitate the dissection of their specific functions.

Although post-transcriptional regulation is an important process in functional modulation, studies of the regulation of phospholipid-related enzymes and protein level are limited. PIP5K activity can be inhibited by phosphorylation and modulated by changes in subcellular localization and substrate binding [145,146], shedding light on the cellular regulation of phospholipid signalling.

The IP₃Rs [Ins(1,4,5)P₃ receptors] have been identified from animal and yeast cells; however, none are known in plants. Ins(1,4,5)P₃ activates IP₃R in the endoplasmic reticulum, resulting in the Ca²⁺ release and leading to the [Ca²⁺]_i oscillations. In plants, an external Ca²⁺-sensing receptor (CAS) serves as a receptor to regulate Ins(1,4,5)P₃ levels and then in turn trigger the Ca²⁺ release. Although cell-surface receptors and IP₃Rs are unknown [2,83], it is reasonable to speculate that CAS may also act as a candidate receptor for Ins(1,4,5)P₃ after studies using biochemical and single-cell imaging analyses [83]. RACK1 (receptor for activated C-kinase 1), which has highly conserved WD40 repeats, acts as a scaffold protein through interacting with IP₃R and other proteins in animal nervous systems [147]. In Arabidopsis, the first crystal structure of RACK1 isoform A has been characterized [148]. Does the WD40 domain of 5PTase family also play a role as a scaffold protein for IP₃R in plants? In addition, the functions of Ins(1,4,5)P₃-mediated Ca²⁺ oscillation seems to be more important than Ins(1,4,5)P₃ itself in Arabidopsis; do Ins(1,4,5)P₃ and Ca²⁺ share the same receptor?

Until now, most studies have been performed using the dicotyledonous model plant Arabidopsis; few studies have been carried out in rice [15,149]. Whether the function is conserved in monocotyledons (such as rice) is not well understood. Preliminary analysis reveals a difference in the domain structure and isoform numbers of key enzymes in the PLD family [15], suggesting a functional divergence between dicotyledons and monocotyledons. Understanding these differences may provide further information for agricultural improvement.

FUNDING

The study was supported by the National Science Foundation of China [grant numbers 30740006 and 30721061] and Science and Technology Commission of Shanghai Municipality [grant number 08XD14049].