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. Author manuscript; available in PMC: 2010 Mar 31.
Published in final edited form as: Biochemistry. 2009 Mar 31;48(12):2740–2751. doi: 10.1021/bi802327j

Table 6.

Free energy penalty, ΔGU, from formation of a disulfide bond calculated from theory and compared to experiment.

ΔSxa (kcal mol−1 K−1)
I1 −0.033
I2 −0.050
I3 −0.051
N −0.065
Loop Formation ΔGU (kcal mol−1)
Theoretical Valueb Experimental Valuec
I1 to I2 60 °C 5.69 5.11 ± 0.8
I1 to I3 60 °C 5.99 6.01 ± 0.8
I2 to N 80 °C 5.29 4.87 ± 0.9
I3 to N 80 °C 4.94 3.97 ± 0.9
I1 to N 60 °C 10.66 10.18 ± 0.5
a)

Theoretical calculation of the entropy loss due to loop closure for each intermediate according to ref. (34)

b)

Theoretical ΔGU = -TΔΔSx at 60 ° or 80 °C and ΔΔSx according to the loop formation indicated

c)
Experimental ΔGU for each Loop Formation according to the following equations:
ΔGU=[ΔGunf(<0)I2orI3ΔGunf(<0)I1]At60°CforI1toI2or I3ΔGU=[ΔGunf(>0)NΔGunf(<0)I2orI3]at80°CforI2orI3toNΔGU=ΔGunf(>0)NΔGunf(<0)I1at60°forI1toN