Abstract
Microtubules are indispensable for Golgi complex assembly and maintenance that is an integral part of cytoplasm organization in interphase mammalian cells. Here, we show that two discrete microtubule subsets drive two distinct, yet simultaneous, stages of Golgi assembly. In addition to the radial centrosomal microtubule array, which positions the Golgi in the cell center, we identify a role for microtubules that form at the Golgi membranes in a manner dependent on microtubule regulators CLASPs. These Golgi-derived microtubules draw Golgi mini-stacks together in tangential fashion and are critical for establishing continuity and proper morphology of the Golgi complex.
We propose that specialized functions of these two microtubule arrays arise from their specific geometries. Further, we demonstrate that directional post-Golgi trafficking and cell migration depend on Golgi-associated CLASPs suggesting that correct organization of the Golgi complex by microtubules is essential for cell polarization and motility.
Introduction
The microtubule (MT) cytoskeleton is to a large extent responsible for dynamic architecture of the cytoplasm including global changes associated with cell cycle progression. In order to successfully adapt to dynamic conditions, cells often distribute the MT “work-load” to functional MTs subsets that are specific for interphase or mitosis [1–3]. MT subsets can be distinguished, for example, by their dynamic or motor binding properties. In particular, dynamic properties of mitotic MTs differ between kinetochore and astral MT subsets. Similarly, distinct front-oriented stable MT arrays establish polarity of motile interphase cells [4, 5]. Orientation and positioning of MTs within a cell, which are important for functional subset partition, to a large extent depend on the MT nucleation sites. For example, MTs originating at the centrosomes and kinetochores build a mitotic spindle in cooperative fashion due to their distinct geometry and growth directionality [6].
MT subsets of distinct origin exit also in motile interphase cells. In particular, we have recently discovered a novel MT subset that is nucleated at the Golgi apparatus [7]. In contrast to radial centrosomal MTs, Golgi-derived MTs form a wide array extending toward the cell edge. This array specifically depends on MT-stabilizing proteins CLASPs (CLIP-associated proteins), which coat Golgi-derived MTs and thus make them biochemically and dynamically dissimilar from the centrosomal array. Thus, the Golgi-derived MT subset is characterized by specific origin, orientation, and protein composition. Do distinct properties of Golgi-derived MTs confer specific functional abilities to this MT subset?
Interphase mammalian cells typically have an integrated, centrally located Golgi complex that serves as the major center for protein sorting. Upon mitotic exit, Golgi mini-stacks are formed by tightly regulated fusion of small Golgi membrane vesicles into cisternae that undergo subsequent stacking. Formation of mini-stacks is MT-independent and can be reconstituted in cell-free system [8] or in a MT-devoid cell at ER exits [9]. Next, these mini-stacks utilize evolving interphase MT network and the minus-end directed MT motor dynein [10–13] to form a continuous Golgi ribbon. However, it is not clear how correct organization of the Golgi ribbon is achieved by dynein transport. Given that CLASP-dependent MTs are closely associated with the Golgi membrane, their specific function may relate to the Golgi organization.
Here, we show that MTs growing from dispersed Golgi stacks exhibit a classical “search and capture” [14] scenario whereby mini-stacks cluster in the cell periphery. Furthermore, Golgi-derived and centrosomal MTs act in concert to organize individual Golgi stacks into a continuous ribbon structure that, in turn, supports the polarity of post-Golgi vesicular trafficking in migrating cells. Centrosomal MTs alone appear to be insufficient for proper Golgi ribbon formation though they actively support central Golgi positioning. Importantly, the distinction between centrosomal and Golgi-derived MT functions arises from their geometry and orientation within the cell. Our findings provide the first demonstration of the functional significance of Golgi-derived MTs and highlight the defining role of functionally distinct MT subpopulations in organization of cellular architecture.
Results
MTs assemble the Golgi ribbon in two stages
Individual Golgi mini-stack formation is MT-independent, while Golgi complex assembly requires MTs [11, 15]. To investigate in detail explicitly the MT-dependent assembly, we employed nocodazole washout assay. Full MT depolymerization in Human Retinal Pigment Epithelial (RPE1) cells by nocodazole treatment resulted in dispersal of Golgi mini-stacks (Fig. 1a,b). Live-cell imaging of Golgi re-assembly upon nocodazole washout (Fig. 1a; Movie 1) revealed that Golgi mini-stacks undergo initial clustering in the cell periphery (Fig. 1a). Quantitative analysis of both live imaging sequences and fixed immunostained samples revealed that Golgi particle size doubled at this time (Fig. 1d,e). Clusters then relocated to the cell center to complete Golgi ribbon assembly (Fig. 1a).
Thus, MTs assemble the Golgi by two distinct mechanisms: one that does not involve relocation toward the centrosome and another that occurs in vicinity of the centrosome. We refer to these processes as the “G-stage” (for Golgi) and the “C-stage” of the Golgi assembly (for centrosome), respectively.
CLASPs are required for initial Golgi clustering
We next addressed the roles of Golgi-derived versus centrosomal MTs in the two-stage process of Golgi assembly. Since CLASPs are essential for Golgi-associated MT nucleation, siRNA targeting of CLASPs (Fig. 1c) explicitly removes the Golgi-derived but not centrosomal MT subset [7]. Hence, we analyzed the process of Golgi assembly in CLASP-depleted cells (Fig 1b,d). Here and below, cells treated with two independent targeting sequences for CLASP1 and CLASP2 were compared to cells treated with non-targeting siRNA oligonucleotides (NT control). After nocodazole washout, Golgi mini-stacks did not form larger cytosolic clusters (G-stage) (Fig. 1b; Movie 1). Instead, unaltered mini-stacks relocated toward the cell center and gathered around the centrosome (C-stage), although they failed to form a well-organized Golgi ribbon (Fig. 1b).
Accordingly, Golgi particle size analysis based on both live imaging data and immunostainings revealed that Golgi particle area in CLASP-depleted cells remained constant by 20 minutes (Fig. 1e), and final average mini-stack area in CLASP-depleted cells was substantially lower than in control cells (Fig. 1d,e; Fig. S1). These observations indicate that CLASPs are essential for the G-stage of Golgi assembly, and that the C-stage alone is not sufficient for the proper Golgi ribbon assembly.
Two-stage Golgi assembly occurs upon mitotic exit
Next we visualized Golgi assembly in untreated cells after mitotic exit (Fig. 2; Movie 2). In mCherryRab6- or GFP-GM130-expressing cells exiting mitosis, the average size of detected Golgi mini-stacks (0.34±0.01μm) did not differ from the size of mini-stacks in nocodazole-treated cells (0.35±0.02μm), indicating that these mini-stacks were likely assembled in MT-independent manner by fusion and stacking of membranes brought together by simple diffusion [8]. During subsequent Golgi assembly, distinct G- and C- stages were easily distinguishable by analysis of the Golgi particle size increase (Fig. 2b). Mini-stack clustering in G-stage often occurred at the cell periphery away from the centrosome (Fig. 2c), suggestive of the role of Golgi-derived MTs that were detected at the periphery of cells exiting mitosis (Fig. S2). The Golgi assembled faster, and temporal separation between G- and C-stages was less distinct than in nocodazole washout assay. Possibly, the efforts of centrosomal and Golgi-derived MTs were better coordinated in a rounded mitotic cell than in a spread cell. Because CLASPs are indispensable for mitosis, we did not directly test their role in post-mitotic assembly; our nocodazole washout results, however, suggest that G-stage Golgi clustering in this scenario is likely CLASP-dependent.
Cooperation of Golgi-derived and centrosomal MTs drive two stages of Golgi assembly
To determine whether CLASPs support Golgi mini-stack clustering at the cell periphery via Golgi-derived MT formation, we directly followed MT involvement in this process. RPE1 cells were co-transfected with variable Golgi stack markers and 3GFP-EMTB to label MTs [16]. As expected, nocodazole washout assay in NT-control cells revealed MT nucleation at individual Golgi mini-stacks as well as at the centrosome (Fig. 3a, c–d; Movie 3). To avoid overlap between G-stage and C-stage, we specifically followed G-stage clustering events at the cell periphery before centrosomal MTs extended into this area. As MTs formed at Golgi mini-stacks polymerized toward nearby mini-stacks, the latter ones were transported into close proximity of the former that allowed subsequent mini-stack linking. Transport of mini-stacks during the G-stage occurred in random directions, often tangential relative to radial centrosomal array.
In contrast, CLASP-depleted cells failed to show MT nucleation at Golgi mini-stacks [7] while centrosomal MT nucleation remained functional (Fig. 3b). Early clustering of mini-stacks at the cell periphery was not detected. However, centrosomal MTs transported Golgi mini-stacks into close proximity of each other and supported their clustering in the central cell area (Fig. 3e–f; Movie 3). In these cells, mini-stack clustering occurred in a radial manner consistent with radial architecture of the centrosomal MT array. Thus, centrosomal MTs are responsible for the C-stage of Golgi assembly including gathering mini-stacks at the cell center and their limited linking along the radial axis.
MT orientation within arrays regulates Golgi organization
Because MT orientation appeared important for Golgi stack clustering in nocodazole washout assays, we further addressed the role of MT orientation in Golgi organization. MT directionality was detected as described in Efimov et al [7]. In brief, RPE1 cells were transfected with GFP-EB3 to mark MT plus-tips and mCherry-GT to label the Golgi, and time-lapse video sequences were recorded. Distinct centrosomal MT and Golgi-derived MT arrays were detected in NT-control cells (Fig. 4a,a”). Interestingly, while centrosomal MTs showed clear radial geometry, MTs formed at the Golgi were predominantly tangential. Golgi ribbons (Fig. 4a') were aligned along Golgi-derived MT tracks suggesting that they were primarily formed via tangential mini-stack linking and fusion (Fig. 4a).
In contrast, CLASP-depleted cells contained only radial MT tracks emanating from the centrosome (Fig. 4b,b”), while the Golgi (Fig. 4b') formed a poorly organized assembly distributed around the centrosome. Apparently, a radial MT array does not allow for tangential linking and fusion of Golgi mini-stacks in these cells. These data indicate that CLASP-dependent Golgi-derived MTs are required for tangential Golgi stack linking within the Golgi ribbon.
Dynein is required for both G-stage and C-stage of Golgi assembly
Since dynein is required to maintain an organized Golgi complex [11], we addressed whether it is involved in G-stage and/or C-stages of Golgi assembly. Nocodazole washout assays in RPE1 cells co-expressing Golgi markers and GFP-EB3 revealed that mini-stacks during G-stage moved in a minus-end directed manner (Fig. 4c). To test whether this movement is driven by dynein, dynein activity was inhibited by either p50 dynamitin [17, 18] or the CC1 domain of p150Glued [19] over-expression (Fig. 4d,f). Golgi particle size was analyzed in live cell imaging sequences (Fig. 4e) and in fixed immunostained cells (Fig. 4f). Golgi particle size did not change throughout nocodazole washout indicating that neither G-stage nor C-stage of stack clustering occurs in the absence of dynein-dependent transport (Fig. 4d). At the same time, plus-end motors remained functional and MTs were available for trafficking as evident from the transport of Golgi mini-stacks toward the cell periphery (Fig. 4d).
CLASP-dependent MTs control Golgi-ribbon morphology
Our data support a model wherein Golgi-derived MTs play a distinct and essential role in Golgi organization (Fig. 4g). Indeed, while in NT-control cells a classic Golgi ribbon associated with Golgi-derived MT array was observed (Fig. 5a,e), in CLASP-depleted cells (Fig. 5b,c,f) MTs formed a radial array and the Golgi showed circular morphology (Fig. 5f). The Golgi shape was reverted back to a ribbon by expression of a non-silenceable GFP-CLASP2α rescue construct in CLASP-depleted cells (Fig. 5d). Dependence of the circular Golgi phenotype on the Golgi-associated CLASP fraction was confirmed by over-expressing GFP-tagged C-terminus of CLASP2 that competes full-length CLASPs off the Golgi (Fig. S3). Similar to CLASP-knockdown, cells over-expressing GFP-CLASP2C had circular Golgi complex (Fig. 5g).
To quantify this phenomenon, Golgi circularity index was calculated in relation to CLASP intensity at the Golgi. In order to directly correlate CLASPs presence with observed phenotypes, cells transfected with CLASP siRNA and NT control siRNA were co-plated in a proportion of 1:1. In this mixed cell population, the Golgi outlines were identified by GM130 immunostaining. Golgi outline circularity indexes showed striking negative dependence on intensities of the immunostained CLASPs within this area (Fig. 5h). Accordingly, the Golgi circularity enhanced as full length CLASP2 was removed from the Golgi by GFP-CLASP2C expression (Fig. 5i) whereas GFP-only expression had no effect (Fig. S4). These results indicate that Golgi-localized CLASPs maintain polarized functional Golgi organization [20], probably through Golgi-derived MT nucleation.
CLASP-dependent MTs control Golgi ribbon continuity
If without Golgi-derived MTs Golgi mini-stack linking is incomplete, membrane fusion required for functional Golgi complex continuity would likely be defective. We performed 3-dimensional Golgi fragmentation analysis on cells immunostained for TGN-46 (data not shown) and GM130 (Fig. S5). CLASP-knockdown cells contained significantly higher number of fragments as compared to NT-control (Fig. 6a,e). Rescue experiments returned Golgi fragment number back to control levels (Fig. 6a,e). Golgi continuity was further examined by FRAP (Fluorescence Recovery After Photobleaching) to assess GT flow within the Golgi network. As expected, fast recovery in control cells (Fig. 6b,f) was typical for a continuous Golgi ribbon where Golgi enzymes freely re-distributed throughout the structure [21–23]. Incomplete fluorescence recovery of CLASP-knockdown cells (Fig. 6c–d,f) indicated that Golgi enzyme mobility between stacks was significantly restricted.
Together, these data reveal that the Golgi is highly fragmented in CLASP-knockdown cells indicative of impaired membrane fusion, which is likely a result of missing tangential linking by Golgi-derived MTs.
Directional trafficking defects in cells lacking Golgi-derived MTs
One logical function of a properly organized Golgi ribbon is support of directional post-Golgi trafficking. Because CLASP-dependent MTs organize the Golgi ribbon, we examined their role in the process of polarized post-Golgi trafficking by monitoring secreted fluorescently tagged Neuropeptide-Y (NPY) [24, 25]. Individual NPY-containing vesicles (Fig. 7a,b) were tracked from the Golgi to the plasma membrane, vesicle tracks were created (Fig. 7a',b') and their directionality was quantified in four cell quadrants (Fig. S6). While NT-control cells exhibited polarized trafficking toward the leading edge (Fig. 7a',c,d), cells after CLASP depletion (Fig. 7b',c, d) or removal from the Golgi by GFP-CLASP2C over-expression (Fig. 7c, d) exhibited randomized symmetric trafficking patterns. VSVG trafficking assays (data not shown) show no differences in overall trafficking to the plasma membrane upon CLASP knockdown indicating that directionality but not efficiency of post-Golgi trafficking depends on Golgi-associated MTs. At the same time, overall MT network also becomes symmetric upon CLASP depletion (Fig. S7), correlating with the fact that directional Golgi-originated MT array is missing in CLASP depleted cells [7] (Fig. 4b).
Migration defects in cells lacking Golgi-derived MTs
Golgi ribbon integrity [26] and asymmetry of post-Golgi transport [27] are thought to play an important role in polarized cell motility along with other potential functions of front-oriented MT arrays [28, 29]. To test for potential migration defects, single NT-control, CLASP-depleted, and GFP-CLASP2C over-expressing cells were monitored by DIC microscopy. CLASP-depleted cells were analyzed only if post-recording immunostaining confirmed non-detectable CLASP levels. NT-control cells migrated in directionally persistent fashion (Fig 8a,e; Movie 4). CLASP-depleted (Fig. 8b–d; Movie 4) cells exhibited random migration, consistent with previous findings [30]. Similar random migration of GFP-CLASP2C over-expressing cells (Fig. 8d,e) suggested that specifically Golgi-associated CLASPs were involved in migratory persistence.
Thus, random migration pattern was observed under the same conditions as the random trafficking (Fig. 7). In order to observe the trafficking pattern and cell edge protrusions in the same cell, we co-expressed NPY as a trafficking marker and RFP-cortactin [31] as a marker of protrusion activity (Fig. 8i,j). Cell migration and cortactin distribution were followed within 1 hour of migration (Fig. 8k,l). One minute NPY tracks were recorded at the beginning and at the end of the cortactin recording. NPY track distribution was compared to the relative length of cortactin-rich cell edge within the same quadrants (Fig. S6) throughout the recording. Persistence of cortactin accumulation over time at one cell side directly correlated with the load of vesicular trafficking to that side (Fig. 8f–h) in both NT control and CLASP-depleted cells, suggesting that vesicular trafficking is likely involved in protrusion site stabilization and may serve a mechanism whereby Golgi-associated CLASPs supports directionally persistent migration.
Discussion
The major MT function is spatial organization of the cytoplasm at particular time points. MT network properties, including specific nucleation sites, orientation, dynamics and molecular motor affinity establish a fine-tunable machine for organelle positioning. The best-studied MT-driven positioning machine is the mitotic spindle. Chromosome location by a “search and capture” mechanism [14] involves variability of all above-listed parameters. Assembly of the Golgi complex described herein is driven by a similar arrangement though this machinery is not understood as clearly as mitosis. Yet, Golgi assembly by G- and C-stage mechanisms provides a strong analogy to modern understanding of the mitotic spindle, which is cooperatively built by centrosomal and kinetochore-derived MTs [6]. In both cases, correct organelle positioning is achieved by cooperation of two MT subsets bearing their own functions due to distinct sites of origin.
Upon nocodazole washout, Golgi undergoes two distinct, yet simultaneous, rearrangements. In G-stage, Golgi-derived MTs organize peripheral Golgi mini-stacks into larger clusters similar to melanosomes in pigment cells [32]. Simultaneously, the C-stage drives relocalizing stacks toward the cell center thought it appeared insufficient for correct Golgi assembly. Why is the unconventional, Golgi-based, nucleation mechanism so important for the Golgi assembly by MTs?
This question can be addressed from a purely geometric as well as from a biochemical point of view. One of the reasons for efficient mini-stack gathering by Golgi-derived MTs could be that the their anchoring sites are distributed evenly throughout the cytosol producing fusion templates of variable orientations. This geometry helps to overcome limitations of diffusion-based mini-stack association and leads to a rapid increase in Golgi particle size. As a result, the probability that centrosomal MTs will easily find and transport mini-stacks toward the cell center is significantly enhanced. This phenomenon likely enhances Golgi assembly rate and may be important for efficient cell cycle progression upon mitotic exit. In the assembled Golgi complex, tangential Golgi-derived MTs likely serve for lateral cross-linking of mini-stacks. Such cross-linking is essential for cisternal fusion and functional continuity of the Golgi complex as evident from Golgi fragmentation and low enzyme mobility in CLASP-depleted cells (Fig. 6).
Besides geometric clues, it is possible that Golgi-derived MTs possess distinct biochemical properties, such as altered balance between plus-end directed and minus-end-directed motor affinity or regulation of proteins involved in membrane fusion. It is known that Golgi membrane fusion requires highly regulated molecular machinery [33, 34]. While our study does not address the biochemistry of fusion, it emphasizes that MT-driven mutual localization of membranes [12] is critical for this machinery to work. Multiple structural biology studies have proven the importance of proper mutual positioning of two entities for a chemically correct interaction to occur. Such correct positioning is as important on the level of organelles as on the level of single molecules and their domains. Golgi mini-stacks in the absence of MTs fragment throughout the cytosol though their membranes carry all molecules required for efficient fusion. Therefore, Golgi mini-stacks need to be brought into close proximity for fusion machinery to proceed. Practically, MTs can be compared to surface catalysts, which hold membranes together. Since the membrane fusion machinery is compartment-specific [35, 36], MTs may promote connection of homotypic cisternae (e.g. cis with cis, or trans with trans). To date, Golgi-derived MTs were suggested to bind either cis-Golgi through AKAP450 [37] or the TGN (trans-Golgi Network) through CLASPs [7]. The latter possibility is supported by the recent finding that a CLASP-binding TGN protein (GCC185) is involved in lateral mini-stack cross-linking [38]. Nevertheless, whether Golgi-derived MTs catalyze homotypic fusion remains to be investigated.
Altogether, we propose that a properly organized Golgi ribbon arises from a concerted effort of G-stage tangential cross-linking and C-stage radial gathering of stacks (Fig. 4g). According to this model, the distinct geometry of Golgi-derived and centrosomal MTs underlies requirement of both MT subpopulations for Golgi ribbon organization.
Another important function of Golgi-derived MTs is support of directional trafficking in motile cells, which may be utilized by two mechanisms (Fig. 8m). First, MT-dependent Golgi morphology may contribute to trafficking directionality if post-Golgi carriers predominantly bud off one side of the polarized Golgi. Second, vesicular transport may be polarized due to direction bias of these MTs toward the cell front [7]. Either way, the observed correlation between the CLASP effects on trafficking and protrusion stability (Fig. 7) suggests that trafficking contributes to CLASP-dependent regulation of migration. Importance of polarized Golgi organization for directional cell motility has been recently supported by data arising from the Golgi ribbon disruption by a number of alternative protein depletions [26]. Additionally, CLASPs function in MT capture at cortical sites [39] may be involved in regulation of migration. Notably, our results involving removal of CLASPs from the membrane (that may involve both Golgi and cortical site association [39]) indicate that CLASP functioning at the membrane and not CLASP MT-binding is important for directional migration. It is yet unclear how CLASP activities at the Golgi and at cortical sites are coordinated. One possibility is that Golgi-derived MTs that possess high CLASP affinity as they form [7] represent the same population of microtubules that are later associated with CLASP at the cell periphery [40] and anchored at the cortical sites [39]. Thus, we propose that Golgi-derived MTs facilitate directional persistence of cell migration, on one hand, through Golgi-ribbon organization and polarized trafficking, and, on the other hand, by establishment of a directional array of CLASP-rich MTs extending toward the cell front.
Methods
Cells
Immortalized human retinal pigment epithelial cells hTert-RPE1 (Clontech) were maintained in DMEM/F12 with 10% fetal bovine serum (FBS). GFP-tubulin expressing LLC-PK1 stable line (renal epithelial cell line derived from porcine kidney, gift of P. Wadsworth, Amherst, MA) were cultured in a mixture of Opti-MEM and F10 (1:1) supplemented with 10% of fetal bovine serum. Cells were grown in 5% CO2 at 37°C. Cells were plated on fibronectin-coated glass coverslips 24 hours before experiments.
Treatments
For MT depolymerization and Golgi dispersal, nocodazole (2.5μg/ml) was added to culture media for 2 hours. For Golgi reassembly experiments, cells were rinsed five times with ice-cold medium to remove nocodazole and then moved to a dish with warm (37°C) medium (time 0 for Golgi reassembly). For live imaging of Golgi reassembly, cells were washed with cold medium directly at the microscope stage after initial recording of cells in nocodazole. Temperature was slowly raised to 37°C by the heated stage. For dynein inhibition cells were transfected with 1.5μg of GFP-p50 or RFP-RCC1 (gift from T.A. Schroer, Baltimore, MD).
siRNA and Expression Constructs
Two alternative combinations of mixed siRNA oligos against CLASP1 and CLASP2 [41] were transfected using HiPerFect (Qiagen) according to the manufacturer's protocol. Combination 1: CLASP1 siRNA targeted sequence 5'-GGATGATTTACAAGACTGG-3'; CLASP2 siRNA targeted sequence 5'-GACATACATGGGTCTTAGA-3'. Combination 2: CLASP1 siRNA targeted sequence 5'-GCCATTATGCCAACTATCT-3'; CLASP2 siRNA targeted sequence 5'-GTTCAGAAAGCCCTTGATG-3'. Experiments were conducted 72 hours post-transfection as at this time minimal protein levels were detected. Nontargeting siRNA (Dharmacon) was used for controls. Empty pEGFP-C1 vector (Clontech) served as a control for circularity quantifications. mCherry plasmid was provided by Dr. R. Tsien (San Diego, CA). YFP-GT (YFPGalactosyltransferase; Clontech), mCherry-GT (modified from Clontech), GFP-GM130 (gift from C. Sütterling, Irving, CA), and Cherry-Rab6 (gift from A. Akhmanova, Rotterdam, The Netherlands) were used for Golgi visualization. EGFP-EB3 (gift from A. Akhmanova, Rotterdam, The Netherlands), mCherry-EB3 (gift from J.V. Small, Vienna, Austria), 3xGFP-EMTB (gift from J.C. Bulinski, New York, NY) were used for MT plus tip and MT visualization. GFP-CLASP1α, GFP-CLASP2α, RFP-CLASP2, GFP-CLASP2-C, and the nonsilenceable rescue construct GFP-CLASP2α are described in Mimori-Kiyosue et al (2005). GFP-Centrin (gift from M. Bornens, Paris, France) was used to mark the centrosome. RFP- and Venus-NPY constructs were provided by Atsushi Miyawaki (Saitama, Japan). Cell polarity marker RFP-cortactin was provided by Marko Kaksonen, UC Berkeley. RPE1 cells were transfected with Fugene6 (Roche), and LLC-PK1 cells with Effectene (Qiagen) according to manufacturer's protocols.
Antibodies and Immunofluorescence Details
Rabbit polyclonal antibodies against CLASP2 VU-83 are described in Efimov et al. [7]. Rabbit polyclonal antibodies against CLASP1 were provided by Dr. F. Severin (Dresden). A mouse polyclonal antibody against Actin (NeoMarkers) was used. For Golgi compartment identification, a mouse monoclonal antibody against GM130 (Transduction Laboratories) and a sheep polyclonal antibody against TGN46 (Serotec) were used. MTs were stained with a rat monoclonal YL1/2 antibody (Abcam). Cells were fixed in cold methanol (10' at −20°C) for CLASPs stainings. For MT staining and Golgi reconstruction cells were fixed (15' at room temp.) in 2% paraformaldehyde, 0.1% Glutaraldehyde, 0.5% Saponin in cytoskeleton buffer (10 mM MES, 150 mM NaCL, 5 mM EGTA, 5 mM glucose, and 5 mM MgCL2, pH 6.1). Alexa488 and Alexa568-conjugated highly cross-absorbed goat anti-mouse IgG antibodies, Alexa568-conjugated goat anti-rat IgG antibodies, and Alexa568 donkey anti-sheep IgG (Molecular Probes) were used as secondary antibodies.
Fluorescence Recovery after Photobleaching
RPE1 cells treated with non-targeting or CLASPs siRNA were transfected with YFP-GT or mCherry-GT and photobleached for 7 seconds with a 10mW DPSS laser 85YCA010 (Melles Griot) by focusing the laser light on the selected Golgi area with a custom-made lens (Nikon) placed in position of the filter cube. Single-channel movies were recorded using wide-field microscopy for 5 minutes (3 seconds/frame) after bleaching.
Quantitative Analysis
Golgi assembly
Images from time points (nocodazole washout: 0, 20, 40, and 60 minutes; mitotic exit: 0, 8, and 20 minutes) were obtained from time-lapse movies of cells expressing either YFP-GT, mCherry-GT, or mCherry-Rab6 to label the Golgi. Images were processed by background subtraction and standardized entropy thresholding, then particle area was quantified using ImageJ analyze particles function.
MT plus end and NPY vesicle tracking analyses
For plus end and vesicle tracking, time-lapse recordings of RPE1 cells expressing fluorescently labeled MT tip marker EB3 (5 sec/frame) or NPY (Venus or RFP) to mark post-Golgi carriers (1 sec/frame) were processed by rolling-ball background correction. Then, a custom script in IPLab software created tracks by rolling average sequences over 4 frames to precisely follow MT tips and vesicles. The manual tracking plugin of ImageJ software was used to follow tracks.
Circularity
To apply circularity measurements to the Golgi, a freehand selection option in ImageJ software was used to outline the Golgi based on GM130 staining. Circularity index values were assigned to Golgi outlines by ImageJ circularity plugin (http://rsb.info.nih.gov/ij/plugins/circularity.html) where Circularity = 4pi(area/perimeter^2). A circularity value of 1 corresponds to a perfect circle. Circularity index was previously used by Patel et al. [42] to analyze overall cell shape and by Thomas and Wieschaus [43] to measure microfilament ring circularity during cellularization.
3D Golgi analysis
Confocal z-slices (0.2μm) were analyzed for 3D continuity by ImageJ 3D objects counter plugin and ImageJ Volume Viewer plugin was used for 3D Golgi reconstruction.
Fluorescence recovery after photobleaching
Fluorescence intensity in bleached and non-bleached regions of the Golgi was measured using ImageJ software. Bleached areas were normalized to non-bleached areas both pre- and post-bleach in order to obtain fluorescence recovery values. Data represents percentage of fluorescence recovery in the bleached region.
NPY quantification
Cells were divided into four quadrants (Fig. S6). A line was drawn down the cell connecting the center of the Golgi and the center of the nucleus. This line was then rotated both +/− 45° in order to create four 90° quadrants corresponding to the cell front (containing the Golgi), right, left, and rear. Tracking of post-Golgi cargos were assigned to each of these categories based upon which quadrant the track fused with the plasma membrane at the cell periphery.
Directional persistence of cell migration
Cell migration tracks were quantified by “Manual tracking” plugin of ImageJ using nuclei positions in DIC recordings of migrating single cells as reference points. Directional persistence was quantified as final distance of cell relocation divided by total migration track.
Cortactin quantification
Cells were divided into quadrants (Fig. S6). Cell outlines were generated by tracing around the entire cell to obtain a total perimeter measurement. A line was drawn to highlight cortactin rich regions of cell border and the total length of this line was quantified as a percentage of the total cell perimeter and assigned to the appropriate cell quadrant (same as for NPY quantification). Images from selected time points (0, 15, and 30 minutes) were calculated for each cell and combined to obtain a total average cortactin percentage per cell quadrant for each cell.
Image Acquisition and Processing
Fig. 1a–b: Wide-field fluorescent video frames, 15 seconds between frames, 200ms exposure, inverted images. Fig. 2a, c: Maximum intensity projection of time-lapse confocal slices (10, 1 micron slices), 1 minute between frames, 100ms exposure time. Fig. 3a–f: Maximum intensity projection of time-lapse confocal slices (10, 0.20 micron slices), 16 seconds between frames, 200ms exposure time for red and green channels. Fig. 4a–c: Wide-field fluorescent video frames, 5 seconds between frames, 200ms exposure time red and green channels (a–c); 15 seconds between frames, 200ms exposure time (d) inverted image. Fig. 5: Maximum intensity projection of confocal stacks (10, 0.20 micron spacing (a–d); 20, 0.20 micron spacing (e–f); 10, 0.20 micron spacing (g)). Fig. 6b–d: Wide-field fluorescent video frames, 3 seconds between frames, 200ms exposure (b), 300ms exposure time (c–d). Fig. 7a–b: Wide-field fluorescent video frames, 1 second between frames, 40 ms exposure time. Fig. 8: False-colored DIC video frames (a–d), 1 minute between frames, 100ms exposure time; wide-field fluorescent video frames (i–j), 5 minutes between frames (cortactin), 200ms exposure time; 1 second between frames (NPY), 300ms exposure time. For images depicting cortactin (Fig. 8i–j) the image intensity in the cell center was artificially decreased for clarity with overlaid NPY tracks. This modification did not affect cell periphery intensity within 5μm from the cell edge (region of interest). The cell cortex, which is the area of interest used for quantification purposes, was not artificially altered. Fig. S1: Wide-field fluorescent images inverted. Fig. S2: Maximum intensity projection of time-lapse confocal slices (10, 1 micron slices), 1 minute between frames, 200ms exposure (red), 100ms exposure time (green). Fig. S3: False-colored snapshots of 3-Dimensional reconstructions from confocal z-sections (control= 8 slices, CLASP si= 15 slices, CLASP rescue= 8 slices; all 0.20 micron slices). Fig. S6: Wide-field fluorescent image. Fig. S7a,c: Maximum intensity projection of confocal stacks (16, 0.20 micron slices). Brightness and contrast were adjusted individually for each fluorescent channel. For images showing Golgi particles and MTs, gamma settings were adjusted to make small structures visible. Images showing MT tip and NPY tracks are shown as maximum intensity projections for background-subtracted time-lapse stacks (Figs. 4a–b, 7a–b, 8i–j).
Quantifying MT asymmetry
Central cell area (30% total area centered at the cell centroid) is excluded from analysis because the brightness of central MTs often overrides otherwise significant differences in the rest of the cell and interferes with MT distribution analysis. Each cell was divided into radial quadrants and the average intensity (I) in each quadrant was quantified. This parameter correlates with the number of MTs in each quadrant. Degree of asymmetry is quantified as the ratio of the highest to lowest intensity.
Statistical Analysis
Statistical significance was determined by Student's t-test (two-tailed unpaired). P-values < 0.05 are shown.
Supplementary Material
Acknowledgments
We thank Drs James Goldenring, Mathew Tyska, and Ryoma Ohi for helpful discussions and Drs Anna Akhmanova, Laura A. Lee and Steven K. Hanks for critical reading of the manuscript. This study was funded by NIH NIGMS grant 1R01GM078373-01 to I.K. and a pilot project to I.K. from NIH NCI GI SPORE grant P50CA095103.
A.R.R.M. was supported by Fundação para a Ciência e Tecnologia fellowship SFRH/BD/32976/2006 and by grant PTDC/SAU-OBD/66113/2006 from Fundacao para a Ciencia e a Tecnologia of Portugal.
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