Netrin-1 interacts with amyloid precursor protein and regulates amyloid-β production

Abstract

The β-amyloid precursor protein (APP) is an orphan transmembrane receptor whose physiological role is largely unknown. APP is cleaved by proteases generating amyloid-β (Aβ) peptide, the main component of the amyloid plaques that are associated with Alzheimer’s disease. Here, we show that APP binds netrin-1, a multifunctional guidance and trophic factor. Netrin-1 binding modulates APP signaling triggering APP intracellular domain (AICD)-dependent gene transcription. Furthermore, netrin-1 binding suppresses Aβ peptide production in brain slices from Alzheimer model transgenic mice. In this mouse model, decreased netrin-1 expression is associated with increased Aβ concentration, thus supporting netrin-1 as a key regulator of Aβ production. Finally, we show that netrin-1 brain administration in Alzheimer model transgenic mice may be associated with an amelioration of the Alzheimer’s phenotype.

Alzheimer’s disease (AD), the most common form of dementia, is a progressive neurodegenerative disorder characterized by extracellular deposits of Aβ peptide in senile plaques, intraneuronal neurofibrillary tangles, synapse loss, and cognitive decline.¹ It is widely believed that the accumulation of Aβ, a small peptide with a high propensity to form oligomers and aggregates, is central to the pathogenesis of AD. Aβ derives from the proteolytic cleavage of the transmembrane protein, APP.² Although a considerable amount is known about interacting proteins and processing events for APP, the physiological role(s) of APP and its related family members, APLP1 and APLP2 (amyloid precursor-like proteins 1 and 2), is (are) still poorly understood.^2,3 APP has been proposed to function in cell adhesion and motility, as well as synaptic transmission and plasticity (for a review, see Turner et al.³).

The cloning and characterization of APP revealed that it possesses many features reminiscent of a membrane-anchored receptor. However, to date, no clear candidate has emerged as the major ligand triggering APP-mediated signal transduction (although several molecules have been shown to bind APP, such as collagen (types I and IV), heparan sulfate proteoglycan, laminin, glypican, and more recently TAG-1)^4–7– at least in part because the signal transduction mediated by APP remains incompletely understood. Here, we show that netrin-1 functions as a ligand for APP, it modulates APP signaling, and we also show that it regulates Aβ peptide production in Alzheimer model transgenic mice.

Netrin-1 is a soluble molecule initially described by Tessier-Lavigne and colleagues⁸ as a chemotropic cue involved in axon guidance. Netrin-1 plays a critical role during nervous system development by mediating chemoattraction of axons and neurons through its interaction with DCC (deleted in colorectal cancer).^8–10 However, netrin-1 has also been described as a survival factor, involved in, among other effects, the regulation of tumorigenesis.¹¹ Such dual effects on nervous system development and tumorigenesis are characteristics of the so-called dependence receptors, of which DCC represents an example.¹²

While performing a mass spectrometric analysis to identify proteins interacting with either DCC or with the DCC/netrin-1 complex, we sequenced APLP1 as a candidate coimmuno-precipitant with the DCC/netrin-1 complex (Supplementary Figure 1). This led to the question of whether netrin-1 may actually interact with APP family members. We show here that APP is a functional receptor for netrin-1. We also show that netrin-1 negatively regulates the Aβ level in adult brain and that netrin-1 brain administration may represent an appealing strategy to improve the Alzheimer’s phenotype.

Results and Discussion

Netrin-1 interacts with APP

APP or APLP-1 and netrin-1 were coexpressed in HEK293T cells and, as shown in Figure 1a and Supplementary Figure 2ab, APLP1 and APP coimmunoprecipitated with netrin-1. As a negative control, another transmembrane receptor, TrkC, failed to coimmunoprecipitate with netrin-1 (Figure 1a). Similar results were obtained when netrin-1 and APP were coexpressed in B103 cells (data not shown). Not only ectopically expressed APP (Figure 1a) but also endogenous APP could be immunoprecipitated with netrin-1 in HEK293T cells (Figure 1b). We next analyzed whether netrin-1 could be recruited to the plasma membrane of APP-expressing B103 cells. As shown in Figure 1c, although netrin-1 failed to show affinity for control-transfected B103 cells, it was recruited to APP-transfected B103 cells. Because these assays were performed in cells in which APP or netrin-1 were expressed in a nonphysiological setting, we investigated the putative APP/netrin-1 interaction in primary cortical neurons from E16.5 mouse embryos. We first analyzed whether endogenous APP is colocalized with endogenously expressed netrin-1 by confocal microscopy. As shown in Figure 1d, APP colocalizes with netrin-1, especially in growth cones of these cortical neurons. We then performed the coimmunoprecipitation of endogenous proteins. As shown in Figure 1e, netrin-1 interacts with APP in the developing cortex, whereas in the same setting, netrin-1 fails to interact with p75^NTR. Moreover, in APP mutant developing brains, netrin-1 is not pulled down after APP immunoprecipitation (Figure 1f). Thus, endogenous netrin-1 specifically interacts with endogenous APP in the developing brain.

Figure 1.

Netrin-1 interacts with APP. (a) HEK293T cells were transiently transfected with myc-tagged netrin-1 and/or APP and/or TrkC. Cell lysate was utilized for immunoprecipitation, using either an anti-N-terminal APP antibody or an anti-TrkC antibody. Immunoblots were probed with antibodies raised against N-terminal APP, netrin-1, or TrkC. (b) HEK293T cells were transfected with netrin-1-expressing construct or not, and endogenous APP was, after c-myc (netrin-1) pull-down, revealed using an anti-C-terminal APP antibody. (c) B103 cells were transfected with mock- or APP-expressing plasmid and treated for 1 h with his-netrin-1. Anti-HIS immunohistochemistry is shown. (d) Colocalization of 5A3/1G7 (APP extracellular domain) with netrin-1 in growth cones of primary cortical neurons. Primary cultures of neurons from DBA/2J embryos were fixed in 4% PFA and stained with 5A3/1G7 and antinetrin 64 or with mouse and rabbit IgGs followed by Alexa568- and Alexa488-conjugated antimouse and antirabbit secondary antibodies, respectively. Stacks of images (z-step=0.25 µm) were acquired with a laser scanning confocal microscope. Analysis of colocalization was performed using the Coloc algorithm in Imaris Bitplane. The Pearson correlation coefficient of channels A (green) and B (red) inside the colocalized region was used as a measure of the degree of colocalization.³⁶ Panels shown are Net1 (netrin-1), APP, merge, Coloc. (colocalization channel), and IgGs (mouse and rabbit IgGs). A cartoon of the region of a cortical neuron shown in the various panels is indicated. (e) Cortexes from E16.5 mouse embryos were collected and semidissociated, and cells lysates were submitted to immunoprecipitation using anti-APP (C-terminal or N-terminal), anti-TrkC or anti-p75^NTR antibody for the pull-down. Immunoblot were then performed using either APP, p75^ntr or TrkC antibody. (f) Immunoprecipitations were performed with a mixed mouse monoclonal anti-APP (5A3/1G7) antibody from E16.5 mouse brain of either wild-type embryo (+/+) and APP mutant (−/−). Netrin-1 and APP immunoblot using a monoclonal antinetrin-1 (dilution 1/1000) (R&D system) and monoclonal anti-APP (5A3/1G7) antibodies are shown. (g) An Elisa assay was developed to determine the Kd_APP/netrin. In all, 2.5 µg/ml of αAPPs protein was coated in 96-wells plate and various netrin-1 concentrations were added. Similar experiment was performed using the pair APP/bFGF. Quantification of the interaction is indicated here by the measurement of the optic density (intensity). Determination of Kd was derived from a simulated Scatchard plot (bound/estimated free = f(bound))

To further analyze whether APP interaction is restricted to netrin-1, we performed immunoprecipitation using different netrin family members. In addition to netrin-1, netrin-2 was also found to interact with APP, whereas we failed to detect the interaction of APP with the more divergent netrin molecule, netrin G1 (Supplementary Figure 2c). Because both netrins and APP are heparin-binding proteins,^10,13 we assessed whether a netrin-1 mutant deleted for domain C (which contains the major heparin-binding domain, but is dispensable for netrin-1 function¹⁰) retains the ability to interact with APP. As shown in Supplementary Figure 2c, this mutant netrin-1 does indeed retain the ability to interact with APP.

To exclude the possibility of an indirect interaction between netrin-1 and APP, direct in vitro interaction was assessed by immunoprecipitation and ELISA assays on recombinant αAPPs or DCC ectodomain, with recombinant netrin-1 or bFGF, a molecule that shares many characteristics of netrin-1.¹⁴ As shown in Figure 1g and Supplementary Figure 2d, immunoblots and ELISA assays revealed a specific interaction of APP with netrin-1, whereas bFGF/APP failed to show specific binding. The affinity of netrin-1 for APPs is the same order of magnitude as its affinity for DCC (estimated Kd_APP/netrin of 6 nM, compared to the known Kd_{DCC/netrin–1} of 10nM¹⁰). Taken together, these data support the notion that netrin-1 interacts with APP with an affinity that is similar to that of its previously described physiological interaction with DCC.

We next attempted to define the APP domain required for the APP/netrin-1 interaction. The carboxy-terminal C83 derived from the γ-secretase cleavage of APP fails to interact with netrin-1, hence further showing that netrin-1 interacts with APP ectodomain (Figures 2a and b). Interestingly, the C100 protein, derived from the β-secretase cleavage of APP (see scheme in Figure 2a), is pulled down with netrin-1 (Figure 2b). Taken together with the finding that, in vitro, the αAPPs protein interacts with netrin-1 (Figure 1j and Supplementary Figure 2b), these observations suggested that a binding region of APP is localized between the β-cleavage and the α-cleavage sites – that is, the 17 aminoterminal residues of Aβ, even though this may not be the only interacting domain of APP with netrin-1. Along this line, recombinant netrin-1 interacts in a concentration-dependent manner with the Aβ peptide (Figure 2c). Thus, Aβ appears to interact with netrin-1 (although we cannot exclude the possibility that this interaction is biologically irrelevant and only because of the well-described “sticky” nature of the Aβ peptide). Interestingly, not only Aβ but also a smaller fragment of Aβ, Aβ 1–17 – that is, the 17 first amino acids of Aβ (a less toxic peptide than full-length Aβ) – interacted with netrin-1, although with a reduced affinity (Kd_{Aβ/netrin–1}:22 nM, Kd_{Aβ1–17/netrin-1}: 30 nM; Figure 2d). Thus, the APP ectodomain interacts with netrin-1 at least in part in a region that includes the Aβ1–17 region of APP.

Figure 2.

A netrin-1-binding domain lies within the Aβ region of APP. (a) Schematic representation of APP. (b) HEK293T cells were cotransfected with a C100 (APP597-695) or C83 (APP613-695)-expressing construct in the presence or in the absence of a netrin-1 expression construct. Immunoprecipitation was performed using anti-APP (C-terminal) for the pull-down and an antibody raised against netrin-1 or against the C-terminal domain of APP for the immunoblot. (c) Netrin-1 immunoprecipitates with Aβ. In all, 150 ng of GST/netrin-1 were incubated with increasing concentrations of Aβ in 1ml of reaction buffer. Pull-down was performed using anti-Aβ-specific antibody, and netrin-1 was detected by western blot using anti-GST antibody. (d) An ELISA assay was performed as in Figure 1g; 0.18 µg/ml of Aβ or 0.07 µg/ml of Aβ1–17 protein was coated in 96-wells plate and various netrin-1 concentrations were added. Quantification of the interaction is indicated here by the measurement of the optic density (intensity)

Netrin-1 affects APP signaling

We next investigated whether netrin-1 may modulate the downstream signaling of APP. The adaptor protein DAB-1 has been shown to interact with the intracellular domain of APP.¹⁵ As shown in Supplementary Figure 3a, netrin-1 enhanced the recruitment of DAB-1 to APP. Similarly, the adaptor protein Fe65 has been shown to interact with the intracellular domain of APP and to provide a mechanism for the coupling of APP to the cytoskeleton.¹⁶ Fe65 has also been shown to be responsible for APP intracellular domain (AICD)-dependent gene transcription. Indeed, even though it is still a matter of debate, it is believed that in the presence of Fe65, the intracellular domain of APP migrates to the nucleus and initiates APP-dependent transcription of a specific set of genes through interaction with TIP60.^17–20 Figure 3a shows that, in APP-transfected B103 cells, the Fe65 interaction with APP is mainly observed when netrin-1 is added. According to the model proposed, this netrin-1-dependent enhanced interaction of Fe65 with APP could lead to an increased AICD activity. To test this, we first used the transactivation assay developed previously¹⁷ in which the DNA-binding domain of Gal4 is fused to APP, and transactivation is monitored with a Gal4-dependent reporter plasmid. As shown in Figure 3b, netrin-1 triggers APP-dependent gene transactivation in HEK293T, whereas bFGF has no effect on the Gal4-dependent reporter. This netrin-1-dependent, APP-dependent transactivation is abolished when APP is mutated at the Fe65 binding site. To further study netrin-1 effects on AICD, AICD was analyzed in primary cortical neurons derived from E16.5 embryos from transgenic mice expressing a human APP minigene carrying the Swedish and Indiana familial AD mutations (PDAPP).²¹ As AICD-nuclear localization is an important – even though dispensable – event in AICD-dependent transactivation,¹⁹ we assessed the effect of netrin-1 on the translocation of APP C-terminal-immunoreactive fragments into nuclei of hAPP transgenic cortical neurons. As shown in Figure 3c and d and Supplementary Figure 3bc, APP C-terminal-immunoreactive fragments are significantly increased in nuclei of netrin-1-treated neurons. We next determined whether KAI1, a gene whose expression has been shown to be AICD-dependent in different cell systems,²² is induced in response to netrin-1. Therefore, quantitative RT-PCR on KAI1 was performed on RNA extracted from netrin-1-treated versus nontreated primary cortical neurons. Netrin-1 induced an increase in KAI1 expression (fold induction: 4.3±1.2). Thus, even though we cannot exclude the possibility that netrin-1-dependent KAI1 expression is due to a netrin-1 receptor other than APP, these observations, taken together with the transactivation assay performed in HEK293T cells, strongly support the notion that netrin-1 triggers AICD-dependent gene transactivation. Taken together, these results suggest that netrin-1 is likely to exert a functional effect on APP signaling.

Figure 3.

Netrin-1 activates APP signaling. (a) B103 cells were transiently transfected with APP and further incubated with (or without) netrin-1. Endogenous Fe65 was immunoprecipitated using anti-Fe65 antibody, and N-terminal anti-APP antibody was used to detect APP within the pull-down. The upper panels represent APP and Fe65 before the pull-down, the lower panel being APP detected in the immunoprecipitation. (b) HEK293T cells were cotransfected with APP-Gal4 or APP*-Gal4 together with a Gal4-luciferase reporters (pG5E1B-luc) construct in a 1:1 ratio. In all, 300 ng/ml of netrin-1 (or of bFGF) was added to the culture after 24 and 48 h after transfection; cells were collected and cell lysates were assessed for luciferase activity using the Promega luminescence measurement assay and a Victor biostation (Perkin-Almer). A histogram plot is presented. Standard deviations are indicated (n=5). (c and d) Primary neuronal cultures from E16.5 hAPP transgenic embryos (PDAPP(J20) in C57BL/6J background) were treated with vehicle (PBS) or with 300 ng/ml netrin-1 added to the culture media every 24 h for 3 days, starting 1.5 day after plating. Cultures were fixed, treated with RNAse, and stained with a 1:1000 dilution of an antibody specific for the C-terminal domain of APP (amino acids 649–664, antiserum I (R1155)³⁷) followed by Alexa488-conjugated donkey antirabbit IgG (Invitrogen) and counterstained with TOTO-3 to visualize DNA. Stacks of images (z-step=250 nm) were acquired with a laser scanning confocal microscope (Nikon PCM-2000) at × 600 magnification and collected with SimplePCI (Compix Inc., Sewickley, PA, USA) software. For each condition, five separate fields were chosen in which individual cells were clearly distinguishable (avoiding clumps of neuronal bodies). A representative maximum intensity projection image of fields acquired for each condition is shown in Supplementary Figure 3b. Distribution of intensity of anti-I immunoreactivity across nuclei is shown in Supplementary Figure 3c. (c and d) Individual volumes (9 × 9 × 6 µ m) of single nuclei (control, n=53; netrin-1, n=51) were cropped from stacks of confocal images and analyzed separately using the Imaris Isosurface algorithm (Imaris Bitplane, Zurich, Switzerland). (c) Maximum intensity projections of stacks of control and netrin-1-treated neuronal nuclei. Representative images are shown. (d) Numbers of anti-I immunoreactive voxels in neuronal nuclei. A significant increase of APP C-terminal immunoreactive voxels was observed in nuclei of neurons and had been treated with netrin-1 (P<0.05, unpaired Student’s t-test)

Netrin-1 controls Aβ levels in an AD transgenic mouse model

Because AD pathogenesis is thought to be mediated at least in part through APP processing resulting in Aβ production, we next evaluated the effect of netrin-1 on Aβ production in hAPP transgenic mice that model AD (PDAPP).²¹ Whole brain slice cultures from PDAPP transgenic and nontransgenic littermates were treated with vehicle or with netrin-1 and were evaluated by ELISA assay for the production of Aβ1–40 and Aβ1–42. As shown in Figure 4a, the Alzheimer model transgenic mice displayed a marked increase in Aβ1–40 and Aβ1–42 net productions over that of the control mice (nontransgenic littermates), but this was suppressed by the addition of netrin-1. To assess the role of netrin-1 in a complementary, loss-of-function experiment, we crossed netrin-1 hemizygous mice (netrin nulls are nonviable) with hAPP transgenic mice, and then quantitated cerebral Aβ concentrations in the progeny by ELISA assay. The PDAPP transgenic netrin-1 hemizygotes (PDAPP/netrin-1 +/−) showed a decreased netrin-1 level in the cortex compared to wild-type mice (PDAPP/netrin-1+/+; Figure 4b, inset). Quantitation of Aβ revealed a significant increase in Aβ levels in netrin-1 hemizygotes compared to wild-type mice (Figure 4b), hence strengthening the view of netrin-1 as a key regulator of Aβ level. Interestingly, netrin-1 is expressed not only during brain development but also in adult brain. Some brain regions still express high levels of netrin-1, as for example the striatum, the ventral tegmentum, and the substantia nigra (Figure 4c and d and Livesey and Hunt²³). Although these brain regions are not those most commonly associated with pathology in AD, these regions have indeed been shown to be affected in Alzheimer’s. Furthermore, netrin-1 expression is also detected in the main regions of Aβ deposition and Alzheimer-related pathology including hippocampus and dentate gyrus (Figure 4c and d and Colicos²⁴). It will, therefore, be of interest to determine whether the concentration ratio of Aβ peptides to netrin-1 in the adult brain represents a critical determinant of the development of AD.

Figure 4.

Netrin-1 regulates net Aβ peptide level. (a) Brain slices from PDAPP transgenic mice and control nontransgenic littermates (N-PDAPP) were cultured in the presence or absence of netrin-1 (1.5 nM). Supernatants were harvested after 3–5 days and evaluated by ELISA assay for Aβ1–40 and Aβ1–42. In all, 90 ng/ml of netrin-1 were added to all Aβ standards to rule out netrin-1 interference with binding of the antibodies used in the ELISA to their epitopes on Aβ. NGF (250 ng/ml) or IGF-1 (100 ng/ml) was also added as control and failed to have any effect on Aβ level (not shown). (b) Netrin-1 expression (inset) and net Aβ production were measured in 5–7-month old PDAPP/netrin-1+/− or PDAPP/netrin-1+/+ mice by ELISA. Fold increase is presented as the ratio between average Aβ levels detected in PDAPP/netrin-1+/− mice and that in PDAPP/netrin-1+/+ mice. Four cohorts of the animals of similar age (netrin-1 +/+ and +/−) were studied. Total number of mice studied were 16. ANOVA test was used comparing +/− versus +/+ in the four groups (P<0.027), comparing +/− versus +/+ in the whole population (P=0.0005). (c) Netrin-1 immunoblot in mouse nervous system. Cortex (Ctx), cerebellum (Cb), spinal cord (ASC), striatum (Str), and hippocampus (Hi) from adult mice or as control E13 mice embryonic spinal cord (ESC) were dissected out, and immunoblots using antinetrin-1 or anti-β-actin (as a loading control) antibody are shown. (d) Netrin-1 expression in adult brain followed by LacZ activity in netrin-1 +/− mutant mice. Control: Xgal staining on net+/+ brain mouse. Cortex (Ctx), cerebellum (Cb), striatum (Str), and hippocampus (Hi) are indicated. Netrin-1 transcript in adult brain was followed using the analysis of transgenic mouse in which the netrin-1 promoter drives the expression of LacZ.⁹ Brains of 8 months old netrin-1 mutant mice net +/− or net +/+ in the NPDAPP genetic background were excised and incubated overnight with a 1.3 mg/ml X-Gal solution, then fixed for 30 min at room temperature with PFA 4% and included in 3% low melting agarose (Cambrex). Brain sections (200 µm) were performed using a vibratome and incubated for 2 days with 1.3 mg/ml X-Gal solution (Euromedex) at 4 °C. (e and f) 6–8 months PDAPP transgenic mice (n=16) were infused intracerebrally with 100 µl of artificial cerebrospinal fluid (saline) with or without 130 µg/ml recombinant mouse netrin-1 for 12–13 days using Alzet osmotic pumps. (e) Aβ–40 and Aβ1–42 levels measured by ELISA as in panel b. (f) preference for novel stimuli in the ON test as described in the Materials and Methods section

Initial studies toward the use of netrin-1 or derivatives to ameliorate the Alzheimer’s phenotype

Netrin-1 thus shows multiple effects that make it a potential candidate for therapy in AD: (i) it markedly decreases Aβ1–40 and Aβ1–42 concentrations in brain slices from Alzheimer model transgenic mice; (ii) it interacts with Aβ peptide, with as-yet-unknown effects on Aβ oligomerization and clearance; (iii) it displays a neurotrophic effect.²⁵ As a first step toward a potential therapeutic use of netrin-1 in AD model transgenic mice, we delivered netrin-1 through the intracerebroventricular pump injection in PDAPP mice. As shown in Figure 4e, a 13-day netrin-1 brain injection (but not vehicle injection) was associated with a decreased Aβ level. Furthermore, consistent with the observed reduction in Aβ levels in netrin-1-treated Alzheimer’s mice, preliminary results suggest that PDAPP mice infused with netrin-1 showed significantly improved memory function. Indeed, as reported previously,^26,27 PDAPP mice lacked the normal preference for novel stimuli, a trend that was exacerbated in the olfactory novelty (ON) recognition tests (Figure 4f). In contrast, preliminary results show that netrin-1-infused PDAPP mice have a pronounced increase in their preference for the exploration of novel stimuli (Figure 4f). Even though we cannot exclude the possibility that this netrin-1-dependent memory enhancement was mediated by a receptor other than APP, this observation strengthens the rationale for mimicking netrin-1 as a putative treatment in AD. Thus, although further work will be required to prove that the delivery of netrin-1, a netrin-1 domain, or a netrin-1 mimetic may be of interest for the amelioration of AD pathology in this transgenic mouse model, the observations that netrin-1 acts as a ligand for APP, controls Aβ level, and may positively impact memory function, opens a novel avenue of research and potential application that links netrin-1, APP-mediated signal transduction, Aβ synthesis, neurite extension/retraction, and AD.

Materials and Methods

Cells, transfection procedures, and purified and recombinant proteins

Transfections of HEK293T (human embryonic kidney) or B103 (neuroblastoma) cells were performed using the lipofectamine reagent (Invitrogen, Carlsbad, CA, USA). Primary cortical neurons were obtained from E16.5 embryos and cultured in neurobasal media supplemented with B27 (Invitrogen). Recombinant Flag-netrin-1 was from Apotech Corp (Axxora). C-myc-tagged netrin-1 was purified from netrin-1-producing 293-EBNA cells as before.⁸ GST/netrin-1 was produced as described previously.²⁸ His-netrin-1 was from R&D systems (Minneapolis, MN, USA). bFGF was from ABcam. Recombinant APPs, Aβ1–42 (and Aβ1–17), and DCC-EC-Fc were purchased from Sigma Aldrich, Anaspec, and R&D systems, respectively.

Plasmid constructs

Full-length APP695 (pcDNA3-APP), netrin-1 (pGNET1–myc), netrin-2 (pGNET2-myc), netrin G1 (pcDNA4-G1-netrin), domains V and VI of netrin-1 (pCEP4-netV-VI), APP-C100 (pcINeo-C100), APLP1 (pcINeo-APLP1), and DCC (pCMV-DCC-S)-expressing constructs were described previously.^8,10,29–32 APP613-695 was obtained by PCR using pcINeo-C100 as a PCR template and the following primers: 5′-CACCATGTTGGTGTTCTTTGCAGA-3′ and 5′-CTAGTT CTGCATCTGCTCAAA-3′, and inserted into a pcDNA3.1TOPOd (Invitrogen). PG5E1B-luc (Gal4 reported construct), pMst (Gal4), pMst-APP (APP-Gal4), pMst-APP* (mutated form of APP unable to bind to Fe65) were described previously.¹⁷ TrkC (pCDNA3-TrkC-HA) was obtained by inserting into pCDNA3 vector, the rat TrkC coding sequence obtained from a pCMX-Trkc plasmid kindly provided by S Meakey.

APP/netrin-1 detection by ELISA assay

Here, 96-well plates (Immnunoplate Maxisorp, Nunc) were coated overnight at room temperature with a secreted form of APP (Aβ and Aβ1–17, respectively ) at a concentration of 2.5 µg/ml (respectively: 2.5, 0.18, 0.07 µg/ml). After 1 h blocking at 37°C with 5%FCS in PBS, wells were washed (0.05%Tween20 in PBS), followed by netrin-1 (Apotech) or bFGF incubation in a concentration range from 0.225 nM-60 nM at 37°C for 1 h. Washed wells were incubated with an anti-FlagM2 (Sigma-Aldrich) or anti-bFGF antibody in blocking buffer for 30 min at 37°C. An antimouse antibody coupled to HRP (Jackson ImmunoResearch Inc.) was added at a concentration of 0.8 µg/ml for 1 h at 37°C. Colorimetric intensity was measured at a wavelength of 490 nm using a Victor station (Wallac).

Western blot and immunoprecipitation

Western blots were performed as described,¹² using APP (C-terminal epitope:Sigma-Aldrich; N-terminal epitope: Sigma-Aldrich), Aβ (biosource), Flag M2 (Sigma-Aldrich), DAB-1 (Exalpha Biologicals), Fe65 (Upstate), GST (Sigma-Aldrich),c-myc (Sigma-Aldrich), P75-NGFR (abcam), TrkC (Santa-Cruz), or Net-1 antimouse monoclonal (R&D systems) antibody. Coimmunoprecipitations from HEK293 and B103 were performed as described previously.³³ Coimmunoprecipitations from primary culture were performed using the microbeads system developed by Miltenyi Biotech. Immunoprecipitation in developing brain was performed with a mixed mouse monoclonal anti-APP (5A3/ 1G7) antibody provided by E Koo. APP mutant mice were in a mixed background of C57BL6, 129SvEv, and 129 Ola and were described before.³⁴ E14.5 mice embryos originating from the same cross APP+/−xAPP+/− were further dissected while genotyping was performed a posteriori.

Confocal analysis on primary cultures of neurons

Primary cultures of neurons were fixed in 4% PFA and stained with various primary antibodies (5A3/1G7, antinetrin 64, or antiserum I (R1155)) followed by Alexa568- and/or Alexa488-conjugated antimouse and/or antirabbit secondary antibodies, respectively. Stacks of images (z-step=0.25 µm) were acquired with a laser scanning confocal microscope (Nikon PCM-2000) using a 100X objective and a 2.7 digital zoom, collected using SimplePCI software (Compix Inc., Lake Oswego, OR, USA) and processed in an SGI Octane R12 computer running Bitplane’s Advanced Imaging Software suite.

Organotypic culture and Aβ release determination

PDAPP(J20) mice were described before.²⁷ In all, 250 µm coronal brain slices were cut from P1 transgenic and nontransgenic littermates’ whole brain to establish organotypic cultures. Tissues were incubated in 0.5% D-glucose, 25% fetal bovine serum, 25% Hank’s buffered saline solution, and in Opti-MEM (Invitrogen). Recombinant netrin-1, NGF, or IGF-1 was added to the media immediately after plating and every 24 h. After 3 days, Aβ1–40 and Aβ1–42 were quantitated in the culture media using specific ELISA assays (Biosource, Camarillo, CA, USA). To measure Aβ in a context of lower netrin-1 concentration, transgenic PDAPP(J20) mice were crossed with netrin-1 +/− mice. Netrin-1 mutant mice were described before.^9,35 Mice with adequate genotypes (PDAPP/netrin-1+/− and PDAPP/netrin-1 +/+) were analyzed for Aβ level using the specific above ELISA assay.

Intracerebroventricular pump injection and behavioral testing in PDAPP mice

Recombinant mouse netrin-1 (R&D) was infused in the left ventricle using Alzet osmotic pumps (Alzet 1002, 0.25 µl/h release rate) for 12–13 days. To assess memory, the simple ON test was used essentially as described ²⁷ and in accordance with the ON SOP from the Murine Behavioral Assessment Laboratory at the University of California, Davis, CA, USA) 1 day before euthanasia. Preference for novelty in the ON test depends on the ability of mice to recall prior experience when presented with a previously encountered scent together with a novel one. Percentage of total time spent investigating the novel scent (preference) was scored and used as a measure of memory of previous experience.

Abbreviations

AD

Alzheimer’s disease

Aβ

amyloid-β

APP

amyloid precursor protein

DCC

deleted in colorectal cancer

APLP1

amyloid precursor-like protein 1

FGF

fibroblast growth factor