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American Journal of Human Genetics logoLink to American Journal of Human Genetics
. 2010 Jan 8;86(1):98–100. doi: 10.1016/j.ajhg.2009.12.004

A Distinct DNA-Methylation Boundary in the 5′- Upstream Sequence of the FMR1 Promoter Binds Nuclear Proteins and Is Lost in Fragile X Syndrome

Anja Naumann, Norbert Hochstein, Stefanie Weber, Ellen Fanning, Walter Doerfler
PMCID: PMC2801757

(The American Journal of Human Genetics 85, 606–616; November 13, 2009)

The original version of Table S2 published online was found to be incomplete. Please find the corrected table below. The table has also been corrected online.

Table S2.

Primers Used in This Study

Primer Position Sequence 5′ to 3′ Strand
NC_000023:146,786,201-146,840,303 H. sapiens FMR1 gene region

P33 13,659 f TTA ATT TAG TGT TAT TAG TTA ATT TTT ATT upper
P34 13,699 f n TAG TTG GAA TTA TTT TTT TTT TTT TAT TTT upper
P35 14,288 r n AAA CCT TTC CTC AAA CCC AAC TTT AAC CCA upper
P36 14,348 r CCC TAT AAA AAC ACC CTA TAC CCT TTA AAA upper
P29 14,169 f GTA GAA ATG AAT TTT AAG TGT TTA ATA TAA upper
P30 14,259 f n TGG GTT AAA GTT GGG TTT GAG GAA AGG TTT upper
P31 14,788 r n AAA AAC CRA CCR AAA TAC CRA ATC RAA AAA upper
P32 14,838 r CCC CRC CCT CTC TCT TCA AAT AAC CTA AAA upper
P25 14,664 f GGG YGT TTT GGT TTT YGY GAG GTA GTG YGA TT upper
P26 14,699 f n TAT YGT TTT TTA GTT TTT TYG TTT TTT ATT AAG upper
P27 14,991 r n RCC CRC TCA AAA ACR ACC CTC CAC CRA AAA TAA A upper
P28 15,056 r ACC RCA CRC CCC CTA ACA ACR ACR CCT CCR T upper
P21 14,589 f AAT CCC AAA AAA ACC RAA CTA AAA TAA CCR lower
P22 14,629 f n ATT TCC CAC RCC ACT AAA TAC ACC TCT ACA lower
P23 14,838 r n TTT YGT TTT TTT TTT TTA AGT GGT TTG GGA lower
P24 14,878 r ATT AAY GTT GTT TTT TTT TTT YGY GGG TTT lower
P92 9,560 f ACA AAA CCC ATA AAT ACA AAA lower
P93 9,670 f n AAT TCA ATA AAA AAA CAA TAA TC lower
P94 10,225 r n TAA TAG GTG TAT AGT AGA AT lower
P95 10,345 r AGA TGA TTT TTT AAA GTG GTT G lower
P96 10,530 f AAT AAA CAA ACC ATA ATA TA lower
P97 10,669 f n ACA TAC TAT ATA ATT CCA ACT lower
P98 11,042 r n AAA ATT AAG TAG ATA GTG GAG AG lower
P99 11,121 r TGA TTT TTT ATT TAA ATG AG lower
P100 11,109 f AAA TAA AAA ATC ATA ATT AAA AAA AAT TAT lower
P101 11,159 f n AAA TAT AAC TTT AAC TAA ATC CTA AAA AAT lower
P102 11,508 r n TTT GTT TTT AGT GTT TAT TAT AGT GTT TGG lower
P103 11,540 r AGA ATA AAG ATT TTT ATT TGT TTT ATT TAT lower
P40 11,531 f TCT TTA TTC TCA CTA AAC TTA C lower
P41 11,808 f n AAA CTA AAT AAA TTT CAT ACA C lower
P42 12,304 r n TTA AAG TTT TTT TTT TTT TT lower
P43 12,417 r TTT GAT TTT GAG TTT TAG TTT lower
P108 12,594 f TAT TCT AAT ACA CTA ACC ATC ATA ATA AAA lower
P109 12,659 f n AAC AAT ATA ATA AAA AAA CAA AAA ATA TAC lower
P110 12,963 r n TGT TTA TGT TTT TTG TAT TTA TAG AGA TGG lower
P111 13,038 r TTA TTT TTA TTT TTT TAG ATA TAA GTT GTA lower
P112 12,869 f ATA AAT ATA ACT CAA AAA CAA ACT ATT AAA lower
P113 12,904 f n CAA TAA AAA ATA AAA ATT TAC AAT CCA ATA lower
P114 13,308 r n TAT TAT AAG TTA TAT TTA ATT TGT GTT GTT lower
P115 13,348 r TTT AGG GTT TAA AAA TAT GTT AAT TTT TTA lower
P116 13,359 f AAC AAC TTA CAC TTA AAA AAA TAT AAT CAT lower
P117 13,419 f n ACA TTA AAA TTA CAA CTA ATA CTC TAC TCC lower
P118 13,615 r n AGG ATG TTG TTG TTG GTG GAA TTT TAG TTT lower
P119 13,648 r ATG ATT TGT TTT AGG TAG GTG TTT TAG AAT lower
P13 13,659 f CCA ACT CAA TAC TAT TAA TTA ACT CTC ACC lower
P14 13,699 f n CAA CTA AAA TCA TCT CCC CTT CTC CAC CCC lower
P15 14,288 r n GAG TTT TTT TTT AGA TTT AGT TTT GAT TTA lower
P16 14,348 r TTT TGT GGA GAT ATT TTG TGT TTT TTA AGG lower
P9 14,169 f ACA AAA ATA AAC CTC AAA TAC TTA ACA CAA lower
P10 14,259 f n TAA ATC AAA ACT AAA TCT AAA AAA AAA CTC lower
P11 14,788 r n GGG AAT YGG TYG GGG TGT YGG GTY GAA AGA lower
P12 14,838 r TTT YGT TTT TTT TTT TTA AGT GGT TTG GGA lower
P1 14,664 f AAA CRT TCT AAC CCT CRC RAA ACA AAT ACR ACC lower
P2 14,699 f n CAC CRC CCT TCA ACC TTC CCR CCC TCC ACC AAG lower
P3 14,991 r n GTT YGT TTA GAG GGY GGT TTT TAT YGG AAG TGA A lower
P4 15,056 r GTY GTA YGT TTT TTG GTA GYG GYG TTT TYG T lower
P5 14,956 f ATT TCA CTT CCR ATA AAA AAC CRC CTC TAA ACR AAC lower
P6 15,029 f n AAA ACR CCR CTA CCA AAA AAC RTA CRA CAA C lower
P7 15,155 r n TTT YGA GAG GTG GGT TGY GGG YGT TYG AGG TTT AG lower
P8 15,195 r TTT TAT TTT TTT TTT AGT TTT GTT AGY GTY GGG AG lower
NC_000086:65,916,730-65,971,138 M. musculus Fmr1 gene region

M13 13,447 f TAA AAC AAC TCA CCC TTA CTC TTT CAA ATA lower
M14 13,497 f n TCT TAT CAC ATT CCA ATT AAA ATC ATC TTA lower
M15 13,984 r n TAG GAG TAG ATG TGT AAA ATT TAA TTT TTT lower
M16 14,030 r GGT GAG GTA GTA ATA AAA AGA TTG TTA TTA lower
M9 14,061 f AAC ACA TAA TAA ACA TTC AAT AAA CTT CTC lower
M10 14,096 f n AAT ACA AAC CTT CTA AAT TAA AAA AAC ATA lower
M11 14,420 r n TTT TTT TTT TAG ATA GTT TTT TTT ATA TTT lower
M12 14,460 r TAA GGG TTA ATA GGG TGT GTT AGA ATT TTA lower
M5 14,391 f AAA TAT AAA AAA AAC TAT CTA AAA AAA AAA lower
M6 14,431 f n TAA AAT TCT AAC ACA CCC TAT TAA CCC TTA lower
M7 14,893 r n TTT TTT GGG TAT TTG TTT TAG GGT ATT AGG lower
M8 14,936 r TTY GTT TTT GTT TTT TTT YGG GTA GTG GAG lower
M1 14,831 f CCT TTC ACC AAA TAC RCR CRC CAA AAA ATA lower
M2 14,864 f n CCT AAT ACC CTA AAA CAA ATA CCC AAA AAA lower
M3 15,226 r n GGA GGT GGG TTG TAG GYG TTT GAG GTT TAG lower
M4 15,295 r GGA GTT TYG TAT TTT TAT TAT TAG TTT TTT lower

Y = C or T; R = A or G; f = forward primer; r = reverse primer; n = nested PCR primer.

The upper or lower strand was amplified during PCR.

The authors regret this error.


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