MICB0106 gene polymorphism is associated with ulcerative colitis in central China

Abstract

Background

The highly polymorphic nonclassical MHC class I chain-related genes A and B (MICA and MICB) encode stress-inducible glycoproteins expressed on various epithelial cells including intestinal epithelial cells. MICA and MICB gene polymorphisms and expressions are associated with autoimmune diseases but not known in ulcerative colitis (UC).

Aims

To investigate the association of MICB exon 2-4 polymorphisms and soluble MICA (sMICA) expression with the susceptibility of UC in central China.

Materials and methods

Genomic DNA was isolated from peripheral blood. The allele frequencies of MICB exon 2-4 were genotyped in 105 UC patients and 213 healthy controls by PCR single-stranded conformation polymorphism method. Thirty-two patients and 32 controls were selected for determining serum sMICA expression by ELISA.

Results

Allele frequency of MICB0106 was significantly higher in UC patients than in healthy controls (19.0% vs. 8.9%, corrected P (Pc) = 0.0006), especially in patients with extensive colitis (24.4% vs. 8.9%, Pc = 0.0006), moderate and severe disease (24.1% vs. 8.9%, Pc = 0.0006), extraintestinal manifestations (20.5% vs. 8.9%, Pc = 0.012), male patients (22.1% vs. 8.0%, Pc = 0.006), and patients over the age of 40 years (28.8% vs. 8.3%, Pc = 0.0006). The sMICA level was significantly higher in UC than in healthy controls (604.41 ± 480.43 pg/ml vs. 175.37 ± 28.31 pg/ml, P = 0.0001) but not associated with the MICB0106 genotypes.

Conclusions

Overall, MICB0106 allele was positively associated with UC in the Han Chinese in central China. sMICA was highly expressed in UC but not associated with the MICB0106 genotype.

Introduction

Ulcerative colitis (UC) is a subtype of chronic nonspecific inflammatory bowel disease (IBD) with unknown etiology. Epidemiological studies in the European and American countries have demonstrated strong evidences of genetic susceptibility to IBD, such as concordance rates in twins and multiply-affected families [1, 2]. Moreover, several genetic studies have found that the HLA genes, which are located on chromosome 6p (IBD3), is one group of the susceptible loci of UC [3, 4]. Therefore, major histocompatibility complex (MHC) genes have been studied as candidate genes for the susceptibility of UC.

The MHC class I chain-related (MIC) gene is located 47-kilo base pairs (kb) centromeric to HLA-B [5]. Mapping studies identified seven MIC loci (MICA–MICG), of which only MICA and MICB encode transcripts, while MICC, MICD, MICE, MICF, and MICG are pseudogenes. MIC molecules show homology with classical HLA molecules but do not combine with β₂ microglobulin or recognize antigen. The MIC molecules have three external domains (α1–3), one transmembrane, and one cytoplasmic domain. The highly polymorphic MICA and MICB encode stress-inducible glycoproteins expressed on a variety of epithelial cells including intestinal epithelial cells. Interaction with the receptor NKG2D is likely to provide an important costimulatory signal for the activation of natural killer (NK) cells, macrophages, CD8+αβ, and γδT cells [6].

There are 65 recognized human MICA alleles and 30 different MICB alleles which have been identified so far (http://www.ebi.ac.uk/imgt/hla) [7]. The microsatellite polymorphism in exon 5 of MICA gene consists of five alleles based on the number of GCT/AGC triplet repeat units (alleles A4, A5, A6, and A9) and the presence of an additional nucleotide G/C insertion (allele A5.1) [8]. MICB is the closest neighbor related to MICA, which has strict polymorphism. The (CA/TG)n microsatellite, consisting of 15 alleles, is present in intron 1 of the MICB gene (CA14-28) [9]. However, numerous high polymorphisms are more likely within the extracellular domain encoding exons 2, 3, and 4 of MICB. Recently, MICA and MICB gene polymorphisms have been found associated with autoimmune diseases [10] including insulin-dependent diabetes mellitus [11], Addison's disease [12, 13], celiac disease [14, 15], rheumatoid arthritis [16, 17], Behcet's disease [18, 19], and IBD [20–23], although little is known about the association between exons 2, 3, and 4 of MICB gene polymorphisms and UC.

In our previous studies, we found ethnic differences in the distribution of MICA (exon 5) and MICB (intron 1) gene polymorphisms [24–28] in central China. MICA-A5.1/A5.1 homozygous genotype, MICA-A5.1 [27], and MICB-CA18 [28] allele are associated with UC in Chinese patients. Since MICA and MICB play important roles in immune regulation in autoimmune diseases and very few studies have observed an association of MICB polymorphism with the hereditary susceptibility to UC, therefore, we provided the exon 2-4 of MICB gene polymorphism and the soluble MICA (sMICA) expression for the susceptibility to UC in the Chinese Han population.

Materials and methods

Patients and healthy controls

A total of 105 UC patients with no family history who registered at our hospital from 2002 to 2006, were randomly collected and investigated. The diagnosis of UC was based on conventional clinical, endoscopic, and pathohistological criteria as described by Lennard-Jones [29]. Using the Montreal classification [30], the extent of the disease was classified as extensive colitis (involvement extends proximal to the splenic flexure) and left side colitis (involvement limited to a proportion of the colorectum distal to the splenic flexure) on endoscopy examination. The severity of UC was defined as mild, moderate, and severe colitis. We combined moderate and severe colitis since there were only five patients in the severe group. Extraintestinal manifestations (EIMs) of patients, including abnormal manifestations on joint, skin, eyes, and primary sclerosing cholangitis, were reviewed by records of the case history and interviews with the patients. A group of 213 unrelated ethnically matched blood donors who matched with gender and age were selected as healthy controls (HC). All the patients and controls were unrelated Chinese with Han nationality. The study was approved by the ethics committee of Wuhan University Zhongnan Hospital, and all the subjects gave informed consent.

DNA isolation

Genomic DNA was isolated from EDTA anti-coagulated peripheral venous blood by a conventional proteinase K digestion/phenol–chloroform extraction method.

Allele genotyping for exon 2, 3, and 4 of MICB

MICB alleles were determined by polymerase chain reaction (PCR) amplification on exons 2, 3, and 4 and followed by single-stranded conformation polymorphism (SSCP) analysis. The primers and annealing temperatures were forward 5′-CCAGGAAGAAGTTTCACCTG-3′, reward 5′-CTGCTCTCTGTCTCCAACTT-3′, 54°C; forward 5′-AAGGTGATGGGTTCGGGAAT-3′, reward 5′-AGCAGAATTGCGGGAACAGT-3′, 56°C; forward 5′-GTGAGAACAGTGGAGAGGAG-3′, reward 5′-CACAGCCGTCCCTGCTGTT-3′, 58°C, respectively, for amplifying exon 2, 3, and 4, which were designed using the genomic DNA sequence of MICB [31]. The concentration of primers used was 0.4 mM. PCR amplification was carried out in a 30-μL volume containing 100 ng of genomic DNA, 2.5 mM of MgCl₂, 3 μL 10×GeneAmp PCR Buffer II, 200 μM of each dNTP, and 0.5 units of AmpliTaq Gold DNA Polymerase (PE Biosystems). The PCR conditions (in BIO-RAD PCR apparatus) were as follows: heating at 95°C for 5 min, followed by 30 cycles of denaturation at 95°C for 30 s, annealing temperature for 45 s, extension at 72°C for 45 s, and a final extension at 72°C for 10 min. The amplified DNA fragments were analyzed by a previously described modified PCR–SSCP method [32]. Exons 2–4 were applied to an 8% polyacrylamide gel (without glycerol) and carried on electrophoresis at 200 V for 2 h. Denatured single-stranded DNA fragments separated in the gel were visualized by silver staining. Genomic DNAs from HLA homozygous typing cell lines with MICB alleles were used as standards [33].

MICB alleles were assigned based on the distinct and combined SSCP patterns of exons 2, 3, 4, respectively (Fig. 1a–c). PCR products were directly sequenced as proved by an automated DNA sequencer (ABI PRISM 3730, BigDye terminator v3.1 reagent) using the same primers.

Fig. 1.

PCR-SSCP analysis of MICB allele. a Three distinct banding patterns were observed in exon 2. b Four distinct banding patterns were observed in exon 3. c Only two distinct banding patterns were observed in exon 4. Banding patterns with one or two lanes showed homozygosis, while three or four lanes showed heterozygosis

sMICA analysis

cMICA in serum was tested by sandwich enzyme-linked immunosorbent assay (ELISA) [34]. The ELISA development kit contains the basic components required, including capture antibody, detection antibody, standard, and Streptavidin-HRP (R&D Systems, USA). After being tested in microplate reader (Tecan, Australia) set at 450 nm, we constructed a standard curve by plotting the mean absorbance for each standard on the Y axis against the concentration on the X axis, calculated as X. The data were fitted by plotting the log of the MICA levels (picograms per milliliter) versus the log of the O.D based on linear regression analysis.

Statistical analysis

SPSS 11.5 was used for statistical calculations. The allelic frequencies were calculated by direct counting, and statistical comparisons were performed by the χ ² test with Fisher's exact test. sMICA levels were analyzed by independent samples nonparametric test. Odds ratios (OR) and 95% confidence intervals (CI) were calculated for the carriers of the specific genotype. Bonferroni multiple corrections were used for the corrected P (Pc) by multiplying the P value by the number of the statistical tests in order to avoid the α1 error. The P and Pc below 0.05 were considered to be statistically significant.

Results

Baseline characteristics of UC patients

The demographic characteristics and clinical features of the patients are shown in Table 1.

Table 1.

Demographic characteristics and clinical features of the patients with UC and healthy controls

	UC (n = 105)	HC (n = 213)
Gender (%)
Male	61 (58.1%)	119 (55.9%)
Female	44 (41.9%)	94 (44.1%)
Mean age of diagnosis (range, in years)	46.95 ± 14.01 (16–79)	41.97 ± 14.81 (21–77)
Mean course of disease (years)	3.5 ± 1.4 (1–18)
Extent of disease (%)
Extensive colitis	41 (39.0%)
Left side colitis	64 (61.0%)
Extraintestinal manifestations (%)
Yes	44 (41.9%)
No	61 (58.1%)
Severity of disease (%)
Mild	47 (44.8%)
Moderate and severe	58 (55.2%)
Colostomy (%)	1 (1.0%)

No significant differences were found in gender and mean age of UC patients and controls (all P >0.05). In these 105 patients, the mean duration of UC was (3.5 ± 1.4) years. There were 41 (39.0%) patients with extensive colitis and 64 (61.0%) patients with left side colitis; 44 (41.9%) patients had extraintestinal manifestation; 58 (55.2%) patients suffered from with moderate or severe disease. Only one (1.0%) patient had colostomy.

The distribution of MICB alleles between UC patients and healthy controls

The distribution of MICB alleles in 105 UC patients and 213 HC is shown in Table 2.

Table 2.

MICB allele frequencies in patients with ulcerative colitis (UC) and healthy controls (HC) [n (%)]

MICB allele	UC (2n = 210; %)	HC (2n = 426; %)	χ 2	P	Pc
0102	86 (41.0)	189 (44.4)	0.668	0.414	2.484
0103	28 (13.3)	53 (12.4)	0.101	0.751	4.506
0104	32 (15.2)	72 (16.9)	0.285	0.594	3.564
0105	12 (5.7)	43 (10.1)	3.415	0.065	0.390
0106	40 (19.0)a	38 (8.9)	13.408	0.0001	<0.001
0107N	12 (5.7)	31 (7.3)	0.545	0.460	2.760

^a OR = 2.402; 95%CI, 1.488–3.879

The frequency of MICB0106 was significantly higher in UC patients (40/210) than in the healthy controls (38/426; 19.0% vs. 8.9%; P = 0.0001; Pc = 0.0006; OR = 2.402; 95%CI, 1.488–3.879). Other differences between UC patients and healthy controls did not reach statistical significance.

The associations between the distribution of MICB alleles and clinical phenomenon of UC patients

When analyzing the distribution of MICB alleles in the subgroup of UC according to disease extent, severity, EIMs, and patients' gender and age, our study only showed that the frequency of MICB0106 was significantly higher in patients with extensive colitis (20/82) than in those with left side colitis (20/128; 24.4% vs. 8.9%; P = 0.0001; Pc = 0.0006; OR = 3.294; 95%CI, 1.800–6.027); higher in moderate and severe disease (28/116) than in mild disease (12/94; 24.1% vs. 8.9%; P = 0.0001; Pc = 0.0006; OR = 3.249; 95%CI, 1.893–5.576); and higher in those with EIMs (18/88) than in non-EIMs (22/122; 20.5% vs. 8.9%; P = 0.002; Pc = 0.012; OR = 2.626; 95%CI, 1.418–4.861). Furthermore, the frequency of MICB0106 allele was significantly higher in the male patients (27/122; 22.1% vs. 8.0%; P = 0.001; Pc = 0.006; OR = 3.276; 95%CI, 1.737–6.178) and in those patients over the age of 40 years (34/118; 28.8% vs. 8.3%; P = 0.0001; Pc = 0.0006; OR = 4.500; 95%CI, 2.381–8.504) compared with healthy controls (13/88 and 17/206, respectively). Therefore, MICB0106 allele was associated with extensive colitis, moderate and severe disease, EIMs, male UC patients, and the patients over the age of 40 years.

The difference in MICB distributions between China and western countries

To determine the effect of ethnicity on MICB gene polymorphism and even its susceptibility to UC, we also investigated the differences in MICB distributions between China (our study) and western countries [22, 35] (Table 3). There were significant differences in MICB distribution between the Chinese and English (P = 0.0001) and between the Chinese and the Spanish (P = 0.018).

Table 3.

The difference of MICB distributions in China and western countries

MICB allele	Hubei Han Chinese	English	Spanish
χ 2	–	50.233	13.700
Degrees of freedom	–	5	5
P	–	0.0001	0.018

sMICA expression in UC patients and healthy controls

In order to investigate sMICA, we selected 33 UC patients and 32 healthy controls randomly from the subjects we had previously. The patients were divided into three subgroups: (1) 12 UC patients carried MICB0106; (2) Eight UC patients carried MICA-A5.1; (3) 13 UC patients carried neither MICB0106 nor MICA-A5.1. Those who carried both MICB0106 and MICA-A5.1 were not included. Tested by a sandwich ELISA, the mean sMICA concentration in the serum of 33 UC patients (604.41 ± 480.43 pg/ml) was 3∼6-fold higher than that in 32 healthy control (175.37 ± 28.31 pg/ml; Fig. 2a). The significant difference reached Z = -6.967, P = 0.0001, which indicates that sMICA was strongly associated with UC.

Fig. 2.

a sMICA concentration in UC patients and HC.* The mean sMICA concentration in the serum of 33 UC patients (604.41 ± 480.43 pg/ml) was significantly higher than that in 32 healthy controls (175.37 ± 28.31 pg/ml). Z = −6.967, P = 0.0001. b sMICA concentration in three subgroups of UC patients. The sMICA concentration in the subgroups of MICB0106 carriers, MICA-A5.1 carriers, and non-MICB0106/MICA-A5.1 carriers was 647.64 ± 518.07 pg/ml, 641.76 ± 603.73 pg/ml, and 543.32 ± 343.70 pg/ml, respectively. The differences between sMICA levels among them did not reach statistical significance ()

The correlation between sMICA expression and MICB gene polymorphism

To correlate sMICA expression to MICB gene polymorphism, we compared the three intersubgroups of UC. The sMICA concentration in both subgroups of MICB0106 carriers and MICA-A5.1 carriers were higher than those in non-MICB0106/MICA-A5.1 carriers (647.64 ± 518.07 pg/ml vs. 543.32 ± 343.70 pg/ml; 641.76 ± 603.73 pg/ml vs. 543.32 ± 343.70 pg/ml), but the differences between sMICA levels among them did not reach statistical significance () (Fig. 2b).

Discussion

Our study focused on the polymorphism of MIC gene which has strong linkage disequilibrium with MHC class I gene. MICA and MICB exclusively encode transcripts and respond to protein expression among all MIC members, while the association of MICB exon 2–4 polymorphisms and soluble MICA (sMICA) expression with the susceptibility of UC has still not been clarified.

In recent studies on MIC genes susceptible to UC, MICA*007 [23], MICA*00801, and MICA-A6 [36] were shown to be associated with UC onset in Japan. Previously, we found that MICA-A5.1/A5.1 homozygous genotype MICA-A5.1 [27] and MICB-CA18 [28] alleles were associated with UC in the Chinese Han population. In this study, we included a limited population in central China which may not be generalized; however, we found that the frequency of MICB0106 allele was significantly higher in the UC group, especially in patients with extensive colitis, moderate and severe disease, and in those with extraintestinal manifestations. In addition, the frequency of MICB0106 was significantly higher in the male UC patients and patients over the age of 40 years than in healthy controls. These positive associations suggest that the people carrying MICB0106 allele are at higher risk of developing UC and might be affected more severely and more extensively throughout the colon or develop more extraintestinal manifestations. In terms of UC susceptibility, males and older people are more affected. We did not analyze the association of UC with MICB genotype because of the small size of each subgroup.

So far, very few studies have observed a relationship between MICB gene polymorphism and UC. Based on genotyping, we selected several publications [22, 35] from a number of different ethnic populations. The comparison of MICB alleles in our study (Hubei Han population, China) with those in England and Spain showed significant differences in the distribution of the exon2–4 of MICB alleles (Chinese vs. English, χ ² = 50.233, P = 0.0001; Chinese vs. Spanish, χ ² = 13.700, P = 0.018). Furthermore, significant differences in the distribution of the intron 1 of MICB alleles were also observed between the Chinese and other populations [28]. These findings suggest that the differences in ethnic and regional living environment would influence on the MICB gene distribution. The association of MICB with UC might be specific to the Chinese population or even to the Han population in central China.

The neighbors MICA and MICB have big similarities in both molecular structure and encoding function. The analysis in available Spanish families indicated that MICB0106 was part of the B8-DR3-DQ2 haplotype (HLA-B*0802-MICA-A5.1-MICB0106-DRB1-*0301-DQA1-*0501-DQB1-*0201). Accordingly, a strong linkage disequilibrium of MICB0106 with DQ2 (λs = 1) and MICA-A5.1 (λs = 0.55) was observed [37]. In our previous study [27], we also observed that some MICA-MICB haplotypes occurred at frequencies of strong linkage disequilibrium (P < 0.01). Therefore, we hypothesize that sMICA expression in serum might also be associated with UC.

By ELISA analysis, we found sMICA are positively associated with UC compared with healthy controls but not associated with MICB gene polymorphism. These observations indicate that sMICA plays a very important role in UC patients, while it is still not clear whether sMICA protein expression is related to the MICB0106 and MICA-A5.1 genotype. The significantly higher MICB0106 gene expression may not be able to fully affect sMICA protein expression, which means that it might affect the function of MIC genes in ways other than genotype or the relatively small sample we studied. A bias of this study might also be that the serum samples were not taken at the time point of diagnosis, so that the rate of disease development may vary between patients. Therefore, a prospective study to analyze serum samples procured at the time of diagnosis will help to clarify whether sMICA can identify risk patients or optimize patient treatment.

As previously reported, MIC expression is under the control of heat shock elements and is increased in response to cellular stress [6] including viral [38] and bacterial infection [39]. In recent observations, MIC-NKG2D engagement augments both the cytotoxic response of CMV-infected CD8+αβT cells and TCR-dependent activation of Vγ2Vδ2 T cells by bacterial antigens, which suggest that this interaction might provide an important costimulatory signal for cytokine production and cellular proliferation [22]. sMICA molecules impair the functions of NKG2D+ T and NK cells, which may facilitate tumor cells to escape from immunosurveillance [40]. Serum levels of sMICA have been shown to be of diagnostic significance in malignant diseases of various origins, including multiple myeloma [41] and colon adenocarcinoma [34]. sMICA are elevated and responsible for down-modulation of NKG2D and other important activating chemokine receptors to deactivate NK immunity. These immune reactions may also present in UC disease which confirms our findings.

In conclusion, our study strongly suggests that MICB gene polymorphism is positively associated with UC in the Han Chinese in central China; sMICA was highly expressed in UC but not associated with the MICB0106 genotype. Further investigation on the function of MIC genes may be interesting in future.