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Epidemiology and Infection logoLink to Epidemiology and Infection
. 1999 Jun;122(3):485–496. doi: 10.1017/s0950268899002411

Sampling considerations for herd-level measurement of faecal Escherichia coli antimicrobial resistance in finisher pigs.

R H Dunlop 1, S A McEwen 1, A H Meek 1, R M Friendship 1, W D Black 1, R C Clarke 1
PMCID: PMC2809645  PMID: 10459654

Abstract

The objective of this study was to determine the most efficient means of sampling faeces of finisher pigs for accurate and precise farm-level estimates of antimicrobial resistance among faecal Escherichia coli. Resistance to tetracycline and gentamicin of 8250 isolates of E. coli from 55 finisher pigs on one farm was measured with a hydrophobic grid membrane filter method. The between-pig, within-pen component of variance in resistance was large (97.5%), while between-pen, within-room and between-room components were small (2.5% and 0%, respectively). Using these resistance data, the abilities of two sampling strategies to estimate prevalence were modelled with a Monte Carlo 'bootstrap' procedure. Compositing faecal samples from several pigs before testing produced unbiased and precise estimates of prevalence and is simpler technically than individual animal testing.

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