Abstract
Human neutrophil elastase (HNE) has been implicated as a major contributor to tissue destruction in various disease states, including emphysema. The structure of HNE, at neutral pH, in complex with methoxysuccinyl-Ala-Ala-Pro-Ala chloromethyl ketone (MSACK), has been solved and refined to an R factor of 16.4% at 1.84-A resolution. Results are consistent with the currently accepted mechanism of peptide chloromethyl ketone inhibition of serine proteases, in that MSACK cross-links the catalytic residues His-57 and Ser-195. The structure of the HNE-MSACK complex is compared with that of porcine pancreatic elastase in complex with L-647,957, a beta-lactam inhibitor of both elastases. The distribution of positively charged residues on HNE is highly asymmetric and may play a role in its specific association with the underlying negatively charged proteoglycan matrix of the neutrophil granules in which the enzyme is stored.
Full text
PDF




Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Avila J. L., Convit J. Physicochemical characteristics of the glycosaminoglycan-lysosomal enzyme interaction in vitro. A model of control of leucocytic lysosomal activity. Biochem J. 1976 Nov 15;160(2):129–136. doi: 10.1042/bj1600129. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bernstein F. C., Koetzle T. F., Williams G. J., Meyer E. F., Jr, Brice M. D., Rodgers J. R., Kennard O., Shimanouchi T., Tasumi M. The Protein Data Bank: a computer-based archival file for macromolecular structures. J Mol Biol. 1977 May 25;112(3):535–542. doi: 10.1016/s0022-2836(77)80200-3. [DOI] [PubMed] [Google Scholar]
- Betzel C., Pal G. P., Struck M., Jany K. D., Saenger W. Active-site geometry of proteinase K. Crystallographic study of its complex with a dipeptide chloromethyl ketone inhibitor. FEBS Lett. 1986 Mar 3;197(1-2):105–110. doi: 10.1016/0014-5793(86)80307-6. [DOI] [PubMed] [Google Scholar]
- Bode W., Wei A. Z., Huber R., Meyer E., Travis J., Neumann S. X-ray crystal structure of the complex of human leukocyte elastase (PMN elastase) and the third domain of the turkey ovomucoid inhibitor. EMBO J. 1986 Oct;5(10):2453–2458. doi: 10.1002/j.1460-2075.1986.tb04521.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Breedveld F. C., Lafeber G. J., Siegert C. E., Vleeming L. J., Cats A. Elastase and collagenase activities in synovial fluid of patients with arthritis. J Rheumatol. 1987 Oct;14(5):1008–1012. [PubMed] [Google Scholar]
- Carrell R. W. alpha 1-Antitrypsin: molecular pathology, leukocytes, and tissue damage. J Clin Invest. 1986 Dec;78(6):1427–1431. doi: 10.1172/JCI112731. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Damiano V. V., Kucich U., Murer E., Laudenslager N., Weinbaum G. Ultrastructural quantitation of peroxidase- and elastase-containing granules in human neutrophils. Am J Pathol. 1988 May;131(2):235–245. [PMC free article] [PubMed] [Google Scholar]
- Doherty J. B., Ashe B. M., Argenbright L. W., Barker P. L., Bonney R. J., Chandler G. O., Dahlgren M. E., Dorn C. P., Jr, Finke P. E., Firestone R. A. Cephalosporin antibiotics can be modified to inhibit human leukocyte elastase. Nature. 1986 Jul 10;322(6075):192–194. doi: 10.1038/322192a0. [DOI] [PubMed] [Google Scholar]
- Garver R. I., Jr, Mornex J. F., Nukiwa T., Brantly M., Courtney M., LeCocq J. P., Crystal R. G. Alpha 1-antitrypsin deficiency and emphysema caused by homozygous inheritance of non-expressing alpha 1-antitrypsin genes. N Engl J Med. 1986 Mar 20;314(12):762–766. doi: 10.1056/NEJM198603203141207. [DOI] [PubMed] [Google Scholar]
- Hendrickson W. A. Stereochemically restrained refinement of macromolecular structures. Methods Enzymol. 1985;115:252–270. doi: 10.1016/0076-6879(85)15021-4. [DOI] [PubMed] [Google Scholar]
- Hughes D. L., Sieker L. C., Bieth J., Dimicoli J. L. Crystallographic study of the binding of a trifluoroacetyl dipeptide anilide inhibitor with elastase. J Mol Biol. 1982 Dec 15;162(3):645–658. doi: 10.1016/0022-2836(82)90393-x. [DOI] [PubMed] [Google Scholar]
- Hyers T. M., Fowler A. A. Adult respiratory distress syndrome: causes, morbidity, and mortality. Fed Proc. 1986 Jan;45(1):25–29. [PubMed] [Google Scholar]
- James M. N., Brayer G. D., Delbaere L. T., Sielecki A. R., Gertler A. Crystal structure studies and inhibition kinetics of tripeptide chloromethyl ketone inhibitors with Streptomyces griseus protease B. J Mol Biol. 1980 May 25;139(3):423–438. doi: 10.1016/0022-2836(80)90139-4. [DOI] [PubMed] [Google Scholar]
- James M. N., Sielecki A. R., Brayer G. D., Delbaere L. T., Bauer C. A. Structures of product and inhibitor complexes of Streptomyces griseus protease A at 1.8 A resolution. A model for serine protease catalysis. J Mol Biol. 1980 Nov 25;144(1):43–88. doi: 10.1016/0022-2836(80)90214-4. [DOI] [PubMed] [Google Scholar]
- Janoff A. Elastase in tissue injury. Annu Rev Med. 1985;36:207–216. doi: 10.1146/annurev.me.36.020185.001231. [DOI] [PubMed] [Google Scholar]
- Janus E. D., Phillips N. T., Carrell R. W. Smoking, lung function, and alpha 1-antitrypsin deficiency. Lancet. 1985 Jan 19;1(8421):152–154. doi: 10.1016/s0140-6736(85)91916-6. [DOI] [PubMed] [Google Scholar]
- Jenne D., Rey C., Haefliger J. A., Qiao B. Y., Groscurth P., Tschopp J. Identification and sequencing of cDNA clones encoding the granule-associated serine proteases granzymes D, E, and F of cytolytic T lymphocytes. Proc Natl Acad Sci U S A. 1988 Jul;85(13):4814–4818. doi: 10.1073/pnas.85.13.4814. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jones T. A. Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO. Methods Enzymol. 1985;115:157–171. doi: 10.1016/0076-6879(85)15014-7. [DOI] [PubMed] [Google Scholar]
- Meyer E. F., Jr, Radhakrishnan R., Cole G. M., Presta L. G. Structure of the product complex of acetyl-Ala-Pro-Ala with porcine pancreatic elastase at 1.65 A resolution. J Mol Biol. 1986 Jun 5;189(3):533–539. doi: 10.1016/0022-2836(86)90322-0. [DOI] [PubMed] [Google Scholar]
- Mowbray S. L., Petsko G. A. The introduction of specific sites for heavy metal binding in a crystalline protein. J Biol Chem. 1983 May 10;258(9):5634–5637. [PubMed] [Google Scholar]
- Navia M. A., Segal D. M., Padlan E. A., Davies D. R., Rao N., Rudikoff S., Potter M. Crystal structure of galactan-binding mouse immunoglobulin J539 Fab at 4.5-A resolution. Proc Natl Acad Sci U S A. 1979 Aug;76(8):4071–4074. doi: 10.1073/pnas.76.8.4071. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Navia M. A., Springer J. P., Lin T. Y., Williams H. R., Firestone R. A., Pisano J. M., Doherty J. B., Finke P. E., Hoogsteen K. Crystallographic study of a beta-lactam inhibitor complex with elastase at 1.84 A resolution. Nature. 1987 May 7;327(6117):79–82. doi: 10.1038/327079a0. [DOI] [PubMed] [Google Scholar]
- Parmley R. T., Doran T., Boyd R. L., Gilbert C. Unmasking and redistribution of lysosomal sulfated glycoconjugates in phagocytic polymorphonuclear leukocytes. J Histochem Cytochem. 1986 Dec;34(12):1701–1707. doi: 10.1177/34.12.3782778. [DOI] [PubMed] [Google Scholar]
- Pflugrath J. W., Quiocho F. A. Sulphate sequestered in the sulphate-binding protein of Salmonella typhimurium is bound solely by hydrogen bonds. Nature. 1985 Mar 21;314(6008):257–260. doi: 10.1038/314257a0. [DOI] [PubMed] [Google Scholar]
- Poulos T. L., Alden R. A., Freer S. T., Birktoft J. J., Kraut J. Polypeptide halomethyl ketones bind to serine proteases as analogs of the tetrahedral intermediate. X-ray crystallographic comparison of lysine- and phenylalanine-polypeptide chloromethyl ketone-inhibited subtilisin. J Biol Chem. 1976 Feb 25;251(4):1097–1103. [PubMed] [Google Scholar]
- Powers J. C. Synthetic elastase inhibitors: prospects for use in the treatment of emphysema. Am Rev Respir Dis. 1983 Feb;127(2):S54–S58. doi: 10.1164/arrd.1983.127.2P2.S54. [DOI] [PubMed] [Google Scholar]
- Ranga V., Kleinerman J., Ip M. P., Sorensen J., Powers J. C. Effects of oligopeptide chloromethylketone administered after elastase: renal toxicity and lack of prevention of experimental emphysema. Am Rev Respir Dis. 1981 Nov;124(5):613–618. doi: 10.1164/arrd.1981.124.5.613. [DOI] [PubMed] [Google Scholar]
- Schechter I., Berger A. On the size of the active site in proteases. I. Papain. Biochem Biophys Res Commun. 1967 Apr 20;27(2):157–162. doi: 10.1016/s0006-291x(67)80055-x. [DOI] [PubMed] [Google Scholar]
- Schwartz L. B., Austen K. F. Enzymes of the mast cell granule. J Invest Dermatol. 1980 May;74(5):349–353. doi: 10.1111/1523-1747.ep12543620. [DOI] [PubMed] [Google Scholar]
- Segal D. M., Powers J. C., Cohen G. H., Davies D. R., Wilcox P. E. Substrate binding site in bovine chymotrypsin A-gamma. A crystallographic study using peptide chloromethyl ketones as site-specific inhibitors. Biochemistry. 1971 Sep 28;10(20):3728–3738. doi: 10.1021/bi00796a014. [DOI] [PubMed] [Google Scholar]
- Shotton D. M., White N. J., Watson H. C. Conformational changes and inhibitor binding at the active site of elastase. Cold Spring Harb Symp Quant Biol. 1972;36:91–105. doi: 10.1101/sqb.1972.036.01.015. [DOI] [PubMed] [Google Scholar]
- Sigler P. B. Iodination of a single tyrosine in crystals of alpha-chymotrypsin. Biochemistry. 1970 Sep 1;9(18):3609–3617. doi: 10.1021/bi00820a017. [DOI] [PubMed] [Google Scholar]
- Sinha S., Watorek W., Karr S., Giles J., Bode W., Travis J. Primary structure of human neutrophil elastase. Proc Natl Acad Sci U S A. 1987 Apr;84(8):2228–2232. doi: 10.1073/pnas.84.8.2228. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Suh S. W., Bhat T. N., Navia M. A., Cohen G. H., Rao D. N., Rudikoff S., Davies D. R. The galactan-binding immunoglobulin Fab J539: an X-ray diffraction study at 2.6-A resolution. Proteins. 1986 Sep;1(1):74–80. doi: 10.1002/prot.340010112. [DOI] [PubMed] [Google Scholar]
- Sussman J. L. Constrained-restrained least-squares (CORELS) refinement of proteins and nucleic acids. Methods Enzymol. 1985;115:271–303. doi: 10.1016/0076-6879(85)15022-6. [DOI] [PubMed] [Google Scholar]
- Thomas K. A., Smith G. M., Thomas T. B., Feldmann R. J. Electronic distributions within protein phenylalanine aromatic rings are reflected by the three-dimensional oxygen atom environments. Proc Natl Acad Sci U S A. 1982 Aug;79(16):4843–4847. doi: 10.1073/pnas.79.16.4843. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tulinsky A., Park C. H., Rydel T. J. The structure of prothrombin fragment 1 at 3.5-A resolution. J Biol Chem. 1985 Sep 5;260(19):10771–10778. [PubMed] [Google Scholar]
- Williams H. R., Lin T. Y., Navia M. A., Springer J. P., McKeever B. M., Hoogsteen K., Dorn C. P., Jr Crystallization of human neutrophil elastase. J Biol Chem. 1987 Dec 15;262(35):17178–17181. [PubMed] [Google Scholar]





