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. Author manuscript; available in PMC: 2011 May 1.
Published in final edited form as: Chem Phys. 2010 May 1;370(1-3):253–257. doi: 10.1016/j.chemphys.2009.10.020

Variance of residence time spent by diffusing particle in a sub-domain. Path integral based approach

A M Berezhkovskii 1
PMCID: PMC2880823  NIHMSID: NIHMS158922  PMID: 20532189

Abstract

Path integral based approach is used to analyze the variance of the residence time spent in a sub-domain by a particle diffusing in the presence of an arbitrary potential in a larger domain containing the sub-domain. It is assumed that there is no absorption of the particle within the domain or at its boundaries. Because of the ergodisity, the mean residence time in the sub-domain is a product of the observation time and the equilibrium probability of finding the particle in the sub-domain. We show that the variance also grows linearly with the observation time at large times and explain how the slope of this linear dependence can be found. The general approach is illustrated by simple examples, in which explicit formulas for the variance can be obtained.

Keywords: Diffusion, residence time, fluctuations

1. Introduction

When developing theory one frequently needs to know how much time a dynamical system spends in a given region of its coordinate/phase space or in a subset of its discrete states. Examples include Taylor dispersion [1,2], single-molecule fluorescence spectroscopy [36], channel-facilitated membrane transport [7], chromatography [8], transport in the cytoplasm [9,10] and in tubes with dead ends [11,12], just to mention a few. This residence time, τω, where the subscript ω denotes the subset or the region of interest, is a random variable. When the observation time, t, is long enough and the system dynamics is ergodic, one can easily find the mean residence time, <τω(t)>=Pωeqt, t → ∞, where Pωeq is the equilibrium probability of finding the system in ω.

The focus of the present paper is on the variance of the residence time in a subdomain ω for a particle that diffuses in a d -dimensional domain Ω in the presence of an arbitrary potential, U(x) (Fig. 1). In the next section we develop a general theory assuming that the distribution of the particle starting point in Ω is the equilibrium one. We show that the variance, στω2(t), grows linearly with t at large observation times, στω2(t)=Aωt, t → ∞, where Aω is a constant, and explain how this constant can be found. To illustrate the general approach in Section 3 we discuss several simple cases when U(x)= 0 (free diffusion) and Ω is a d -dimensional sphere, d=1, 2, 3, containing a spherical sub-domain ω in its center. In these cases we obtain explicit expressions for the variance that show how it depends on the radii of ω and Ω in spaces of different dimensions. Some concluding remarks are made in Section 4.

Fig. 1.

Fig. 1

Schematic representation of domain Ω containing sub-domain ω.

The theory developed in the present paper is based on the path integral approach to the problem. An alternative path integral based approach has been used in Ref. [13], which is mainly focused on the distribution of the time spent in a spherical domain by a particle freely diffusing in an unbounded three-dimensional space, assuming that the observation time is infinite. So, the present paper and Ref. [13] complement each other. In Ref. [13] one can also find several useful references that are not mentioned in the present paper. More recent references on studies devoted to the residence time can be found in Ref. [14].

To avoid confusion and to explain what, we believe, is new in the present paper, we indicate that the concept of the residence time has been used in the literature in two different contexts. The concept was used when discussing processes, in which the particle can be trapped or escape to infinity, so that the probability density of its position vanishes as t→∞. We do not consider such situations here and assume that there is no absorption of the particle within the domain or its boundaries, so that the particle lives forever, and any initial distribution of its position approaches the Boltzmann equilibrium one as t→∞. Analysis of the relaxation kinetics in such situations was pioneered by Noam Agmon in Ref. [15], which is focused on the mean relaxation times assuming that the system is spherically symmetric. In this paper we assume that the particle’s starting point is taken from the equilibrium Boltzmann distribution. Then the particle is in equilibrium from the very beginning and we need not consider an initial period of relaxation. Our analysis is focused on the variance of the residence time in ω when both the domain and the sub-domain are of arbitrary shape and diffusion occurs in the presence of arbitrary potential, U (x). Main results of this paper are the expressions for the variance given in Eqs. (24) and (37). To our knowledge, they have never been discussed in the literature. However, some intermediate formulas appearing in the course of our analysis can be found, for example, in Refs. [13] and [15], as well as in the books [16, 17].

2. General Theory

2.1. Residence time

Consider a particle diffusing in a d -dimensional domain Ω in the presence of an arbitrary potential U (x). There is no absorption of the particle within the domain or at its boundaries, so that any initial distribution of the particle position eventually relaxes to the Boltzmann equilibrium one. We assume that ∫Ω exp[−βU (x)]dx is finite, where β =1/(kBT) with the standard notations k and T for the Boltzmann constant and the absolute temperature. The domain contains a sub-domain ω as schematically shown in Fig 1. From time to time the particle enters the sub-domain, spends some time inside, then escapes, then comes back again, and so on. Let {x}t be a particle trajectory, e.i., a path, along which the particle moves, observed for time t, {x} ={x(t′), 0 ≤ t′ ≤ t}, and Iω (x) be the indicator function of ω defined as

Iω(x)=ωδ(xx)dx={1,ifxω0,otherwise (1)

where δ(z) is the d-dimensional Dirac delta-function. The residence time spent by the trajectory in the sub-domain, τω({x}t), is given by

τω({x}t)=0tIω(x(t))dt=ωdx0tδ(x(t)x)dt (2)

This time is a random variable. In what follows we use the definition in Eq. (2) to find the first two moments and then the variance of the residence time assuming the equilibrium Botlzmann initial distribution of the particle starting point in Ω.

2.2. Mean residence time

The mean residence time spent in the sub-domain by a particle that starts from x0 and is observed for time t, <τω(t | x0)>, is the residence time τω ({x}t)averaged over all trajectories that start from x0. Denoting the averaging over such trajectories by <…>x0 and using Eq. (2) we can write

<τω(tx0)>=<τω({x}t)>x0=ωdx0t<δ(x(t)x)>x0dt (3)

Since the averaged delta-function is the particle propagator,

<δ(x(t)x)>x0=g(x,tx0) (4)

we obtain

<τω(tx0)>=ωdx0tg(x,tx0)dt (5)

Introducing the notation Pω (t | x0) for the probability of finding the particle in the sub-domain at time t,

Pω(tx0)=ωg(x,tx0)dx (6)

we can write < τω (t | x0)> as

<τω(tx0)>=0tPω(tx0)dt (7)

As t→∞, Pω (t | x0) approaches its equilibrium value Pωeq,

Pωeq=ωpeq(x)dx (8)

where peq (x) =Z−1 exp[−βU(x)] is the equilibrium distribution in Ω with Z = ∫ Ω exp[−βU(x)]dx. As a result, at large times <τω (t | x0)> takes the asymptotic form, Pωeqt. This is a consequence of the ergodicity of the diffusive motion.

Averaging <τω (t | x0)> in Eq. (5) over the equilibrium distribution of the particle starting point in Ω and denoting the result by ≪τω (t)≫eq we obtain

τω(t)>>eq=Ω<τω(tx0)>peq(x0)dx0=0tdtωdxΩg(x,tx0)peq(x0)dx0 (9)

The integral over Ω is equal to peq (x) independently of time,

Ωg(x,tx0)peq(x0)dx0=peq(x) (10)

Using this fact and the definition of Pωeq, Eq. (8), we arrive at

τω(t)>>eq=Pωeqt (11)

Thus, for the equilibrium distribution of the particle starting point in Ω this relation is true not only at asymptotically large times, but at any moment of time, t≥ 0.

2.3. Variance of the residence time

The second moment of the particle residence time in the sub-domain, Eq. (2), on condition that the particle starts from x0, <τω2(tx0)>, is given by

<τω2(tx0)>=<[τω({x}t)]2>x0=<[0tIω(x(t1))dt1][0tIω(x(t2))dt2]>x0 (12)

Interchanging the averaging over trajectories and the integrations with respect to time we obtain

<τω2(tx0)>=20tdt20t2<Iω(x(t2))Iω(x(t1))>x0dt1 (13)

where we have used the symmetry of function <Iω (x(t1) ) Iω(x(t2) ) >x0. This function can be expressed in terms of the particle propagator. To show this, consider the function at t2 > t1. Using the definition of the indicator function, Eq. (1), we can write

<Iω(x(t1))Iω(x(t2))>x0=ωω<δ(x(t2)x2)δ(x(t1)x1)>x0dx1dx2 (14)

For t2 > t1 we have

<δ(x(t2)x2)δ(x(t1)x1)>x0=g(x2,t2t1x1)g(x1,t1x0) (15)

where the definition of the propagator, Eq. (4), has been used. Combining the relations in Eqs. (13)-(15) we arrive at

<τω2(tx0)>=20tdt20t2dt1ωωg(x2,t2t1x1)g(x1,t1x0)dx1dx2 (16)

We denote the equilibrium average of <τω2(tx0)> over the particle starting points by τω2(t)>>eq,

τω2(t)>>eq=Ω<τω2(tx0)>peq(x0)dx0 (17)

Using Eq. (16) and the relation in Eq. (10) we obtain

τω2(t)>>eq=20tdt20t2dt1ωωg(x2,t2t1x1)peq(x1)dx1dx2 (18)

The propagator approaches the equilibrium distribution as t→∞. With this in mind we can write the propagator as

g(x,tx0)=peq(x)+u(x,tx0) (19)

Substituting this into Eq. (18) and carrying out the integrations of peq (x) over ω we arrive at

τω2(t)>>eq=(Pωeqt)2+20tdt20t2dt1ωωu(x2,t2t1x1)peq(x1)dx1dx2 (20)

where we have used the definition of Pωeq, Eq. (8).

Since Pωeqt=τω(t)>>eq we can find the variance of the particle residence time in the sub-domain, στω2(t),

στω2(t)=τω2(t)>>eqτω(t)>>eq2=20tdt20t2dt1ωωu(x2,t2t1x1)peq(x1)dx1dx2 (21)

By construction, u(x,t | x0) vanishes as t→∞, and its integral with respect to time from zero to infinity is finite. We use this to find the long-time asymptotic behavior of the variance,

στω2(t)=2tωω[0u(x,tx0)dt]peq(x0)dxdx0,t (22)

Introducing function wω (x) defined by

wω(x)=ω[0u(x,tx0)dt]peq(x0)dx0 (23)

we can write the variance, Eq. (22), as

στω2(t)=2tωwω(x)dx,t (24)

Thus, to find the asymptotic behavior of the variance, one has to find the function wω (x) and then to integrate it over the sub-domain.

Function wω (x) satisfies the equation that can be derived starting with the evolution equation for the propagator,

g(x,tx0)t=L^g(x,tx0) (25)

where is the Smoluchowski evolution operator,

L^=D{peq(x)[1peq(x)]} (26)

and D is the particle diffusion coefficient. Integrating both sides of Eq. (25) with respect to time from zero to infinity and using Eq. (19) we obtain

peq(x)δ(xx0)=L^0u(x,tx0)dt (27)

Multiplying both sides of this equation by peq (x0) and integrating with respect to x0 over the sub-domain, we arrive at the desirable equation for the function wω (x)

L^wω(x)=[PωeqIω(x)]peq(x) (28)

Note that function wω (x) found by integrating this equation satisfies the relation

Ωwω(x)dx=0 (29)

This is a consequence of the fact that function u(x,t | x0) is the difference of the propagator and the equilibrium distribution and, therefore, satisfies

Ωu(x,tx0)dx=Ω[g(x,tx0)peq(x)]dx=0 (30)

The relation in Eq. (29) follows from this and the definition of function wω (x), Eq. (23).

To summarize, one can find function wω (x) by integrating Eq. (28) and then use this function to find the variance by means of Eq. (24). This is one of the major results of the present paper. To illustrate the approach, in the next section we find the variance in several cases of simple geometry where explicit expressions for the variance can be obtained.

Finally we point out that the variance, Eqs. (22) and (24), has an interesting interpretation. To show this we introduce function vω (x) defined by

vω(x0)=ω[0u(x,tx0)dt]dx (31)

Using this function the variance, Eq. (22), can be written as

στω2(t)=2tωvω(x0)peq(x0)dx0,t (32)

Interchanging the order of integrations and using Eqs. (6), (8), and (19) we can write function vω (x), Eq. (31), in the form

vω(x0)=0[Pω(tx0)Pωeq]dt (33)

Next we introduce the relaxation function, Rω (t | x),

Rω(tx0)=Pω(tx0)PωeqPω(0x0)Pωeq=Pω(tx0)PωeqIω(x0)Pωeq (34)

and the relaxation time, <tωrel(x0)>, defined as the time integral of the relaxation function,

<tωrel(x0)>=0Rω(tx0)dt (35)

This allows us to write function vω (x0), Eq. (33), as

vω(x0)=[Iω(x0)Pωeq]<tωrel(x0)> (36)

Substituting this into Eq. (32) we obtain

στω2(t)=2ttωrel>>eqPωeq(1Pωeq),t (37)

where tωrel>>eq is the relaxation time <tωrel(x0)> averaged over the equilibrium distribution of the starting points in the sub-domain,

tωrel>>eq=1Pωeqω<tωrel(x0)>peq(x0)dx0 (38)

Comparison of the two expressions for the variance, Eqs. (24) and (37), shows that the averaged relaxation time can be written as

tωrel>>eq=1Pωeq(1Pωeq)ωwω(x)dx (39)

Note that the relaxation time remains finite when Pωeq approaches zero or unity since the integral over ω vanishes in both cases, i.e., when ω tends to zero or Ω. The expression for the variance in Eq. (37) shows that the variance is proportional to the equilibrium average of the relaxation time. This expression also shows that the variance vanishes when Pωeq tends to zero and unity, i.e., when the sub-domain collapses into a point or approaches the entire domain.

3. Illustrative examples

3.1. Diffusion on an interval

Consider a particle freely diffusing in one dimension on an interval of length L, 0< x < L, terminated by reflecting end points at x=0 and x =L (domain Ω). The quantity of our interest is the variance of the time spent by the particle inside the shorter interval of length l, 0<x <l, lL (sub-domain ω). The long-time asymptotic behavior of this variance is given by Eq. (24), which in the case under consideration takes the form

στω2(t)=2t0lwω(x)dx,t (40)

Function wω (x) satisfies Eq. (28) that can be written as

Dd2wω(x)dx2=1L[lLH(lx)],0<x<L (41)

where H (z) is the Heaviside step function and we have used the fact that in the present case peq (x) =1/L, Pωeq=l/L, and the indicator function, Eq. (1), is given by Iω (x) =H (lx). Function wω (x) satisfies reflecting boundary condition at x= 0, dwω (x)/dx | x=0 =0 and the relation

0Lwω(x)dx=0 (42)

which follows from Eq. (29).

Integrating Eq. (41) we obtain

wω(x)=16L2D×{(Ll)[l(2Ll)3x2],0<x<ll[2L2+l26Lx+3x2],l<x<L (43)

Substituting this into Eq. (40) and carrying out the integration we arrive at

στω2(t)=2l2(Ll)2t3L2D,t (44)

Next we use Eq. (39) to find the averaged relaxation time. In the case under consideration this equation takes the form

tωrel>>eq=1Pωeq(1Pωeq)0lwω(x)dx (45)

and leads to

tωrel>>eq=l(Ll)3D (46)

The formulas in Eqs. (44) and (46) show that both the variance and the averaged relaxation time vanish as l approaches zero or L.

3.2. Diffusion inside a circle

Consider a particle freely diffusing inside a circle of radius R (domain Ω). This time we are interested in the variance of the time spent by the particle inside the smaller circle of radius a, aR, (sub-domain ω) concentric with the initial larger circle. In the case under consideration peq (r) =1/(πR2), Pωeq=a2/R2, and the indicator function, Eq. (1), has the form Iω (r) =H (ar). The asymptotic behavior of the variance, Eq. (24), in this case is given by

στω2(t)=4πt0awω(r)rdr,t (47)

Function wω (r) satisfies Eq. (28) that can be written as

Drddr[rdwω(r)dr]=1πR2[a2R2H(ar)],0<r<R (48)

When integrating this equation we use the reflecting boundary condition at the origin, dwω (r)/dr |r=0 = 0 and the relation

0Rwω(r)rdr=0 (49)

that follows from Eq. (29).

Integrating Eq. (48) we obtain

wω(r)={wω(0)R2a24πR4Dr2,0<r<awω(0)a24πR2D[1+2ln(ra)r2R2],a<r<R (50)

where wω (0) is given by

wω(0)=a28πR2D[4ln(Ra)1+a2R2] (51)

Substituting wω (r), Eq. (50), into Eq. (47) and carrying out the integration we arrive at

στω2(t)=[2ln(Ra)1+a2R2]a4t2R2D,t (52)

The averaged relaxation time in Eq. (39) in the case under consideration takes the form

tωrel>>eq=2πPωeq(1Pωeq)0awω(r)rdr (53)

Its explicit dependence on the two radii is

tlrel>>eq=[2ln(Ra)1+a2R2]a2R24(R2a2)D (54)

The formulas in Eqs. (52) and (54) show that both the variance and the averaged relaxation time vanish as a approaches zero or R.

3.3. Diffusion inside a sphere

Finally we consider a particle freely diffusing in three dimensions inside a sphere of radius R (domain Ω). We wish to find the long-time asymptotic behavior of the variance of the time spent by the particle inside the concentric sphere of smaller radius a, aR (sub-domain ω). In the case under consideration peq (r) = 3/(4πR3), Pωeq=a3/R3, and the indicator function, Eq. (1), has the form Iω (r) =H (ar). The asymptotic behavior of the variance, Eq. (24), in this case is given by

στω2(t)=8πt0awω(r)r2dr,t (55)

Function wω (r) satisfies Eq. (28) that can be written as

Dr2ddr[r2dwω(r)dr]=34πR3[a3R3H(ar)],0<r<R (56)

When integrating this equation we use the reflecting boundary condition at the origin,

dwω (r)/dr |r=0 = 0 and the relation

0Rwω(r)r2dr=0 (57)

that follows from Eq. (29).

Integrating Eq. (56) we obtain

wω(r)={wω(0)R3a34πR6Dr2,0<r<awω(0)3a28πR3D(12a3rar22R3),a<r<R (58)

where wω (0) is given by

wω(0)=3a28πR3D(16a5R+a35R3) (59)

Substituting wω (r), Eq. (58), into Eq. (55) and carrying out the integration we arrive at

στω2(t)=(13a2R+a32R3)4a5t5R3D,t (60)

The averaged relaxation time in Eq. (39) in the case under consideration takes the form

tωrel>>eq=4πPωeq(1Pωeq)0awω(r)r2dr (61)

Its explicit dependence on the two radii is

tlrel>>eq=(13a2R+a32R3)2a2R35(R3a3)D (62)

The formulas in Eqs. (60) and (62) show that both the variance and the averaged relaxation time vanish as a approaches zero or R.

4. Concluding remarks

The present paper deals with a particle that diffuses in a d -dimensional domain Ω in the presence of an arbitrary potential U (x) and occasionally visits a subdomain ω (Fig. 1). The residence time in the sub-domain, τω, is a random variable. One can easily find the mean residence time using the fact that diffusive dynamics is ergodic. In the present paper we discuss the variance of the residence time, στω2(t), assuming equilibrium distribution of the particle starting point over the entire domain Ω. We show that the variance linearly grows with time at large times, στω2(t)=Aωt, t→∞, with Aω =2∫ ω wω (x)dx, where function wω (x) can be found by integrating Eq. (28). We also establish the relation between Aω and the relaxation time defined in Eq. (38), Aω=2Pωeq(1Pωeq)tωrel>>eq. Our general approach is illustrated by applying the formalism to the cases of simple geometries, where explicit formulas for the variance can be obtained.

Our analysis is based on the path integral approach to the problem. We start with the definitions of the quantities of interest in terms of the path integral. Then we use the relations in Eqs. (4) and (15) that allow us to express these quantities in terms of the propagator. Next we split the propagator into its long-time asymptotic part, peq (x), and the “relaxation” part, u(x,t | x0), that vanishes at large times, Eq. (19). This representation of the propagator is used when deriving Eq. (28). We hope that our results will be of use in the future studies.

Acknowledgments

The author is greatly obliged to his colleagues at NIH, Sergey Bezrukov, Irina Gopich, Attila Szabo, and George Weiss, as well as his colleagues in Israel, Mexico and Russia, Noam Agmon, Leonardo Dagdug, Yurii Makhnovskii, and Vladimir Zitserman, for very useful and illuminating discussions of different aspects of the residence time distribution and related problems. This study was supported by the Intramural Research Program of the NIH, Center for Information Technology.

Footnotes

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