Abstract
Mutation of rod photoreceptor-enriched transcription factors is a major cause of inherited blindness. We identified the orphan nuclear hormone receptor estrogen-related receptor β (ERRβ) as selectively expressed in rod photoreceptors. Overexpression of ERRβ induces expression of rod-specific genes in retinas of wild-type as well as Nrl−/− mice, which lack rod photoreceptors. Mutation of ERRβ results in dysfunction and degeneration of rods, whereas inverse agonists of ERRβ trigger rapid rod degeneration, which is rescued by constitutively active mutants of ERRβ. ERRβ coordinates expression of multiple genes that are rate-limiting regulators of ATP generation and consumption in photoreceptors. Furthermore, enhancing ERRβ activity rescues photoreceptor defects that result from loss of the photoreceptor-specific transcription factor Crx. Our findings demonstrate that ERRβ is a critical regulator of rod photoreceptor function and survival, and suggest that ERRβ agonists may be useful in the treatment of certain retinal dystrophies.
Keywords: Crx, ligand, neurodegeneration, retina, development
The vertebrate retina contains two major subtypes of photoreceptors—rods and cones. Clinically, dysfunction and death of rod photoreceptors are the primary causes of most forms of inherited photoreceptor dystrophy. A number of rod-expressed transcription factors (1–7) have been identified that are required for rod photoreceptor differentiation or survival. Biochemical analysis has indicated that these factors are present at the promoters of rod-specific genes in vivo and directly activate expression of rod-specific genes (1, 8, 9). Mutation of rod-enriched transcription factors in humans can lead to rod photoreceptor dystrophy (10, 11). Failure to express normal levels of rod-specific genes thus results in rod photoreceptor degeneration, and correction of this defect may have considerable value in treating inherited blindness.
Analysis of gene expression in developing and mature rod photoreceptors has indicated that other transcription factors also show highly rod-enriched expression (12–15). Among these is estrogen-related receptor β (ERRβ), an orphan nuclear hormone receptor homologous to the classical estrogen receptor but which constitutively activates transcription in the absence of estradiol (16, 17). ERRβ is specifically expressed in differentiating and mature mouse rod photoreceptors (12, 13), with significant mRNA levels also detected in the human retina (18). Deletion of a floxed allele of ERRβ in the embryoid body using a Sox2-Cre line (hereafter referred to as ERRβ−/−) results in mice with a defect in inner ear development but no obvious retinal defects (19). Loss-of-function mutations of ERRβ have been reported in inherited forms of human deafness (20).
Given the prominent expression of ERRβ in retinal photoreceptors, we hypothesized that ERRβ might also play an important role in rod photoreceptor function. We observed that genetic or pharmacological disruption of function of ERRβ leads to rod photoreceptor degeneration. ERRβ also directly regulates expression of rod-specific genes, with ERRβ being sufficient to both drive activation of rod-specific genes in vivo and rescue rod photoreceptors of Crx−/− mice from degeneration. These data imply that synthetic agonists of ERRβ may prove useful in treating photoreceptor degeneration resulting from mutation of rod-specific transcription factors.
Results
Expression of ERRβ in Developing and Mature Retina.
Our previous work demonstrated that ERRβ mRNA was first seen in the early postnatal mouse retina, initially showing expression in cells resembling immature horizontal cells, and from the second week of life was expressed in retinal photoreceptors (12, 13). To further clarify the distribution of ERRβ protein, we performed immunohistochemical analysis with markers of rod, cone, and horizontal cells. We found that ERRβ was coexpressed with Lhx1, a marker of horizontal cells, throughout the first week of life. However, the horizontal cell expression of ERRβ was drastically down-regulated after postnatal day (P) 10, consistent with the previously reported mRNA expression pattern (13) (Fig. 1A). Starting at P7, ERRβ immunostaining is detected across the outer nuclear layer (ONL), consistent with a photoreceptor-specific expression pattern. Immunostaining with the anti-rhodopsin antibody Rho4D2 and anti-ERRβ reveals that ERRβ and rhodopsin are colocalized at P14 (Fig. S1A). Furthermore, ERRβ and the cone-specific marker S-opsin (Fig. 1B) are not colocalized at any age examined. Finally, ERRβ protein is absent from photoreceptors of P10.5 Nrl−/− mice, although still detected in developing horizontal cells, demonstrating that ERRβ is specifically expressed in rod photoreceptors (Fig. S1B). Expression of ERRβ is still detected in photoreceptors of mice lacking functional Crx and Nr2e3, however, which retain rod photoreceptors (Fig. S1B). We thus conclude that ERRβ is selectively expressed in immature horizontal cells and in rod photoreceptors at intermediate and late stages of differentiation.
Two homologs of ERRβ, ERRα and ERRγ, are also present in the retina. ERRα is broadly expressed in the mature retina, with somewhat more prominent expression in inner retina than in ONL, as previously reported by in situ hybridization analysis (13). ERRγ, on the other hand, is prominently expressed in cone photoreceptors and in a subset of inner retinal cells, with only weak expression detectable in rod photoreceptors (Fig. S1C).
Activation of Rhodopsin Expression by ERRβ.
To analyze the function of ERRβ in the developing retina, we overexpressed full-length ERRβ under the control of the ubiquitous CAG promoter as previously described (21, 22). Overexpression of ERRβ increased the fraction of cells expressing rhodopsin relative to empty vector controls at P14 (Fig. 1 C–F), although no significant increase in the fraction of cells in the ONL was detected, implying that ERRβ overexpression does not drive retinal precursors toward a rod photoreceptor fate. A modest increase in the fraction of cells expressing amacrine-specific markers and showing amacrine morphology was also observed (Fig. 1 C–F), although no increase in the fraction of cells expressing the horizontal cell marker calbindin was detected (Fig. 1 E and F).
Loss of function of the rod-specific transcription factor Nrl results in conversion of rod photoreceptors to short-wavelength cones (4), and provides an excellent model to determine whether ERRβ is sufficient to induce expression of rod-specific genes. To investigate this, we overexpressed ERRβ by electroporation of Nrl−/− retinas at P0.5. We saw robust induction of rhodopsin expression following CAG-ERRβ electroporation at P14 as measured by both section and flat-mount immunohistochemistry and by quantitative RT-PCR (Fig. 1 G–J) reminiscent of the phenotype seen following transgenic overexpression of Nr2e3 in Nrl−/− mice (23). CAG-ERRβ electroporation did not, however, result in repression of S-opsin synthesis, as is seen following Nr2e3 overexpression.
These data suggested that ERRβ might directly activate expression of rod-specific genes, perhaps in conjunction with other known rod-enriched transcription factors. To address this question, we first analyzed whether ERRβ directly activated rhodopsin expression by using a rhodopsin promoter luciferase construct (22). We observed a dose-dependent activation of luciferase expression by ERRβ, whether alone or in combination with Crx, Nrl, and/or Nr2e3 (Fig. 1K). DY131, a selective agonist of ERRβ (24), enhanced ERRβ-dependent activation of luciferase expression. In contrast, 4-hydroxytamoxifen (4-OHT), an inverse agonist of ERRβ, converted ERRβ into a potent transcriptional repressor in a dose-dependent manner. Finally, mutation of a predicted estrogen-related receptor target sequence in the proximal rhodopsin promoter significantly reduced the ERRβ-induced activation of luciferase expression. These data demonstrate that rhodopsin expression can be regulated by ERRβ and that ERRβ-dependent transcription of rhodopsin can be modulated by selective ligands of ERRβ.
Regulation of Rod Photoreceptor Survival by ERRβ.
Although we did not observe any obvious morphological changes in P21 retinas of ERRβ−/− mice, we investigated whether effects on rod photoreceptor function or survival were seen at later ages. We observed a slow degeneration of rod photoreceptors in mutant mice. Starting at 3 mo of age, a decrease in the length of rod outer segments (Fig. 2 A, C, and F) was detectable by hematoxylin and eosin (H&E) staining, with a significant decrease in the number of cell bodies in the outer nuclear layer detectable by 6 mo of age (Fig. 2 A, B, and E). By 24 mo of age, the great majority of rod photoreceptors were gone, although a subset of cone photoreceptors were preserved (Fig. 2 B and C). A significant decrease in the length of cone outer segments was observed in ERRβ−/− mice by 18 mo of age (Fig. 2 D and F), although the total number of cone photoreceptor cells was not different between wild-type and mutant animals (Fig. 2G). No changes were observed in the number or structure of any inner retinal cell type (Fig. S2).
To determine whether photoreceptor function was lost, we measured the electroretinogram (ERG) of these mice at 10 and 24 mo of age. By 10 mo, a dramatic reduction in the scotopic a and b wave was observed, whereas the photopic b wave was not reduced (Fig. 2 H and I). The time to peak of the photopic b wave of ERRβ−/− mice was also delayed, as previously reported in mice showing progressive rod dystrophy (25). At 24 mo of age, a severe deterioration of the scotopic response was seen, along with a secondary reduction in the photopic ERGs (Fig. S3). No abnormalities in either scotopic or photopic ERGs are observed at P33, in line with the normal cellular morphology observed at this age (Fig. 2A and Fig. S2). These data imply that ERRβ expression is necessary for rod photoreceptor function and survival.
We next examined whether pharmacological inhibition of ERRβ directly regulates rod photoreceptor survival. Diethylstilbestrol (DES) functions as an inverse agonist of ERRα, ERRβ, and ERRγ (17), whereas 4-OHT is an inverse agonist for ERRβ and ERRγ but not ERRα (16). Beginning at P14, we treated retinal explants with ERRβ inverse agonists. By 2 d postexplanting, we observed selective rod photoreceptor degeneration in retinas treated with either 10 μM DES or 4-OHT, but not with 0.1% EtOH carrier, with prominent levels of TUNEL staining detected (Fig. 2 J and K). The increase in TUNEL staining was selective for rod photoreceptors, with no effect on cone or bipolar cell viability observed (Fig. S4). Surprisingly, an increase in TUNEL staining not only in photoreceptor cells but also in the inner retina of 4-OHT-treated retinas is observed in ERRβ−/− retinas relative to wild-type animals (Fig. 2 J and K). Although the reason for this observation remains unclear, this may imply that the 4-OHT-induced selective cell death of rod photoreceptors is not being entirely mediated by ERRβ, but also partially by ERRγ or an uncharacterized cellular target. The prominent cell death seen in mutant animals in cells of the inner retina, which do not express ERRβ, also suggests that ERRβ might regulate retinal cell survival through a partially non-cell-autonomous mechanism.
We next tested whether overexpression of a drug-insensitive, constitutively active ERRβ could rescue rod degeneration observed following DES or 4-OHT treatment of retinal explants. Whereas overexpression of CAG-VP16 did not protect rod photoreceptors from degeneration, overexpression of the VP16 transcriptional activator domain fused to the DNA-binding domain of ERRβ resulted in a significant level of protection of electroporated photoreceptors. Interestingly, this protection extended to nearby nonelectroporated regions. This suggests that ERRβ might regulate either expression of a secreted neuroprotective factor or else allow removal of a diffusible toxic factor (Fig. S5 A and B).
Identification of ERRβ Target Genes.
Next, we used DNA microarray analysis to determine whether ERRβ regulated expression of rod-specific genes in addition to rhodopsin. We observed 425 transcripts that were significantly down-regulated following loss of ERRβ at P21, with 303 transcripts significantly up-regulated (fold change greater or less than 1.25×; P < 0.05). We found that down-regulated genes were significantly enriched for a known rod photoreceptor-enriched expression pattern (P = 0.0004). One of the most highly down-regulated genes was the transcription factor Mef2c, which is down-regulated in Nrl−/− mice (14, 15). A number of phototransduction-associated genes, such as rhodopsin, were also significantly reduced in expression, but several genes in this group stood out as particularly strongly down-regulated. Specifically, the guanylate cyclase activator proteins Guca1a and Guca1b and the sodium/potassium/calcium rod inner segment cation exchanger Slc24a1 (Table S1) were greatly affected. In addition, we observed significant down-regulation of several genes involved in rate-limiting steps in glycolysis, including Hk2, Pfkb2, and Pfkp along with Ppara, a transcription factor known to directly regulate transcription of fatty acid-metabolizing enzymes (26). Each of these genes has previously been identified as a transcriptional target of ERRα and ERRγ in nonneuronal tissues (27), but a role for ERRβ in regulation of metabolism has thus far not been reported. Quantitative real-time PCR analysis of a representative subset of such transcripts indicated that they were indeed significantly down-regulated in P21 ERRβ−/− retinas (Fig. 3). The cellular expression pattern of a number of transcripts down-regulated in ERRβ−/− retinas was examined using in situ hybridization. We determined that some were enriched in rod photoreceptors. Others, such as Hk2, are broadly expressed, but selectively down-regulated in the photoreceptor layer of P21 ERRβ−/− mice (Fig. S6). See Dataset S1 for a full list of transcripts that are differentially expressed in the P21 ERRβ−/− retina.
ERRβ Activation Promotes Rod Photoreceptor Survival.
Finally, we investigated whether enhancing ERRβ function could rescue defects caused by genetic disruption of other rod-expressed transcription factors. Because mutations in Crx are the most common disease-associated defect of this sort, we determined whether enhancing ERRβ function through either overexpression or pharmacological manipulation could rescue defects in rod-specific gene expression and rod survival found in Crx−/− mice (28). Although ERRβ expression is reduced in Crx−/− mice, it is still detectable in rod photoreceptors (Fig. S1B). Electroporation of CAG-ERRβ in Crx−/− mice resulted in a substantial decrease in cell death in photoreceptor cells at P21, along with a restoration of rod-specific gene expression in electroporated cells (Fig. 4 A and B). In retinas electroporated with ERRβ-CAG, the protection from apoptosis extended to nearby photoreceptors that were not GFP-positive, although induction of rhodopsin expression was confined to GFP-positive cells, reminiscent of the cell-non-autonomous cell protection observed in DES- and 4-OHT-treated retinas that were electroporated with ERRβ-VP16. In addition, treatment of retinal explants obtained from Crx−/− mice with DY131, a selective agonist for ERRβ/γ, resulted in a substantial decrease in the fraction of TUNEL-positive cells in the ONL, along with a significant increase in the expression of rhodopsin (Fig. 4 C and D). These data suggest that manipulation of ERRβ activity may protect rod photoreceptors from dysfunction and death in mutants where expression of rod-specific transcripts is compromised.
Discussion
Our findings indicate that ERRβ is a rod photoreceptor-specific transcription factor that regulates the expression of multiple rod-specific genes and is required for survival of this cell type. Targeted disruption of ERRβ leads to a slow and selective degeneration of rod photoreceptors, preceded by loss of rod outer segments. Furthermore, pharmacological inhibition of ERRβ/γ leads to a selective degeneration of rod photoreceptors, which can be rescued by overexpression of constitutively active ERRβ. Selective down-regulation of a subset of rod-specific genes is also observed in mutant mice. A working model for the action of ERRβ in regulation of rod photoreceptor-specific gene expression and rod survival based on these findings is shown in Fig. S7. ERRβ—like Crx, Nrl, and Nr2e3—directly activates rhodopsin expression. Although ERRβ expression is reduced in mice mutant for both Crx and Nrl, it is unclear whether these factors directly regulate ERRβ transcription (14, 15). However, our finding that ERRβ overexpression in Nrl−/− animals induces photoreceptor expression implies that ERRβ can function independently of this gene to regulate rod-specific gene transcription. Like Crx, loss of function of ERRβ leads to both dysfunction and degeneration of rod photoreceptors, although with substantially slower kinetics (28). Unlike in Nrl- and Nr2e3-deficient retinas, no ectopic activation of cone-specific genes is observed in ERRβ−/− animals.
ERRβ has been previously shown to regulate cell specification and survival at a number of different stages of development. This role in development is distinct from the role of its homologs ERRα and ERRγ, which act primarily to regulate cellular metabolism rather than differentiation (29). Targeted mutation of ERRβ leads to defects in trophoblast cell differentiation and survival (30), which result in embryonic lethality. Epiblast-specific deletion of ERRβ with Sox2-Cre leads to a defect in specification of endolymph-producing cells in the developing inner ear, resulting in deafness and vestibular defects (19). This defect is mirrored in humans carrying point mutants in the ERRβ gene, who show early-onset hearing loss (20). Our findings extend the known functions of ERRβ to the regulation of sensory neuron specification and survival, and further suggest that individuals lacking ERRβ may turn out to suffer from late-onset rod photoreceptor dystrophy, a defect which may remain undetected owing to the relative youth of the patients investigated thus far.
The rod photoreceptor degeneration observed in ERRβ−/− retinas manifests itself very slowly. It is not yet clear how ERRβ loss of function leads to rod degeneration. Although expression of a number of genes that regulate phototransduction is reduced in ERRβ−/− mice, the most dramatic reduction is seen for Guca1a and Guca1b, which are the rate-limiting regulators of cGMP production in photoreceptor outer segments, and Slc24a1, the rod inner segment sodium/potassium/calcium transporter. Inner segment cation transport and cGMP production are by far the largest users of free energy in rod photoreceptors (31). Selective defects are also seen in enzymes that regulate free energy generation in photoreceptors, notably enzymes regulating glycolysis and the pentose phosphate pathway, including Hk2, Pfkb2, and AldoA, each of which is photoreceptor-enriched and down-regulated in Nrl−/− mice (14, 15). Rod photoreceptors exhibit a high level of aerobic glycolysis, which acts to both regenerate cGMP in rod outer segments as well as generate high levels of NADPH via the pentose phosphate pathway for chromophore reduction. Selective defects in both functions have been proposed to lead to photoreceptor degeneration (32, 33). A general rescue of photoreceptor metabolism may be one reason why non-cell-autonomous protection of photoreceptors is observed in both DES- and 4-OHT-treated retinas overexpressing ERRβ-VP16, and also in Crx−/− mice overexpressing ERRβ (Fig. 4 C and D).
Our studies suggest that pharmacological manipulation of retinal ERRβ activity may serve as a therapeutically useful tool for preventing rod photoreceptor degeneration in mutations that result in loss-of-function defects in transcription factors such as Crx, Nrl, and Nr2e3. These proteins regulate rod-specific gene expression and collectively comprise 3–5% of all identified forms of autosomal-dominant retinitis pigmentosa and 1–2% of Leber congenital amaurosis (34, 35). DY131, a selective agonist of ERRβ and ERRγ (24), enhances expression of rod-specific genes and inhibits rod degeneration when applied to retinas of Crx−/− mice, whereas overexpression of ERRβ in photoreceptors of these mice achieves the same result. Selective ocular drug delivery is routinely used in treatment of a broad range of ophthalmic disorders, and takes advantage of the fact that the eye represents a relatively self-contained system that restricts the spread of drugs and resulting side effects on other organs. Our findings suggest that ERRβ agonists may prove useful in treating select inherited forms of rod photoreceptor dystrophy.
Materials and Methods
Animals.
Timed pregnant CD-1 and C57BL/6 mice were purchased from Charles River Breeding Laboratories and Jackson Laboratory, respectively. ERRβ−/− mice were generated as previously described (19), with homozygous mutant mice generated by breeding to the Sox2-Cre line (36). All experimental procedures were preapproved by the Institutional Animal Care and Use Committee of Johns Hopkins University School of Medicine.
In Vivo Electroporation, Immunohistochemistry, and in Situ Hybridization.
In vivo electroporation was performed at P0 as previously described (21). Protocols for section immunohistochemistry, dissociated cell immunohistochemistry, and in situ hybridization were performed essentially as previously described (13, 22). H&E staining solution (Sigma) was used according to the manufacturer's recommended protocol.
Electroretinogram.
ERGs were recorded as previously described (37).
Retinal Explants and TUNEL Staining.
P14 retinas were dissected and explanted as previously described (21). The culture media containing 0.1% EtOH (carrier), 10 μM DES (Sigma), 10 μM 4-OHT (Sigma), and 10 μM DY131 (Tocris Bioscience) were changed every 2 d.
Full experimental procedures for this study can be found in SI Materials and Methods.
Supplementary Material
Acknowledgments
We thank T. Shimogori, J. Nathans, and members of the Blackshaw lab for their comments on the manuscript, P. Heite for assistance with luciferase assays, and K. Miki and P. Campochario for assistance with ERG recording. This work was supported by a W. M. Keck Distinguished Young Scholar in Medical Research Award (to S.B.), National Institutes of Health Grants EY012543 and EY02687, a Lew Wasserman Merit Award from Research to Prevent Blindness (to S.C.), and a Knights Templar Pediatric Ophthalmology Research Award (to A.O.).
Footnotes
The authors declare no conflict of interest.
This article is a PNAS Direct Submission.
Data deposition: Primary microarray data files have been deposited in the Gene Expression Omnibus (GEO) database (accession no. GSE21944).
This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1000102107/-/DCSupplemental.
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