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. Author manuscript; available in PMC: 2010 Jul 15.
Published in final edited form as: Biopolymers. 2008 May;89(5):380–391. doi: 10.1002/bip.20960

Table I.

Turn Properties and Roles in Protein Foldinga

Protein (PDB ID) Turnb Conservationc Predicted Turn Propensityd Properties of Peptide Model Ref.
Protein G B1 Domain (1gb1) (1) 9GKTL12 4.75 2.244 graphic file with name nihms212918t1.jpg Strong native propensity of the second turn fragment 71,73
(2) 47DATK50 7.00 4.494
Protein L B1 Domain (1k50) (1) 13ANGS16 5.25 3.385 graphic file with name nihms212918t2.jpg Weak native-like propensities of both turns 66,71,74
(2) 51ADKG54 1.00 2.961
Ubiquitin (1ubq) (1) 7TLTG10 7.00 2.838 graphic file with name nihms212918t3.jpg N-terminal hairpin stable in aqueous methanol and in water 79,80,84,85
(2) 18EPSD21 2.00 4.423
(3) 38PDQQ41 4.50 1.834
(4) 45FAGK48 5.50 1.599
(5) 51EDGR54 3.75 2.532
(6) 62QKES65 3.50 2.533
Titin I band 27th Domain (1tit) (1) 14FVGE17 4.50 2.811 graphic file with name nihms212918t4.jpg 87,88
(2) 36LKGQ39 6.50 5.037
(3) 44SPDC47 4.00 2.494
(4) 51EDGK54 4.75 3.800
(5) 65LGMT68 5.00 e
(6) 75AANA78 3.00 2.650
Pin1 WW Domain (1pin) (1) 17RSSG20 5.50 7.322 graphic file with name nihms212918t5.jpg 89,92,93, 94
(2) 26NHIT29 5.50 6.226
SH3 Domain (1srm) (1) 20TETD23 3.75 2.388 graphic file with name nihms212918t6.jpg Diverging turn (27–30) and distal hairpin (49–52) fragments have native-like conformations 69,70,96, 98,101,102
(2) 27KKGE30 5.00 2.594
(3) 38TEGD41 4.75 3.187
(4) 49TTGQ52 2.75 2.417
CRABP I (1cbr) (1) 46DGDQ49 4.50 2.490 graphic file with name nihms212918t7.jpg 123125
(2) 56TTVR59 6.25 2.786 Strong native-like propensity of 3rd and 4th hairpin fragments
(3) 66KVGE69b 6.25 1.197
(4) 75TVDG78 7.80 2.269
(5) 89NENK92 4.50 2.387
(6) 102GDGP105 3.25 3.454f
(7) 114ANDE117 2.75 2.244
(8) 124ADDV127 2.75 2.426
a

Turns shown by protein engineering to form before the transition state in bold italic font.

b

Identified based on structure using DSSP132 and checked by criteria in Stride.133

c

Average of the conservation scores of the individual turn residues obtained using ConSurf.134

d

Propensities to form a turn calculated using COUDES.48

e

Not predicted as a turn in COUDES.

f

Predicted turn sequence is within the Ω-loop.