Table I.
Protein (PDB ID) | Turnb | Conservationc | Predicted Turn Propensityd | Properties of Peptide Model | Ref. | |
---|---|---|---|---|---|---|
Protein G B1 Domain (1gb1) | (1) 9GKTL12 | 4.75 | 2.244 | Strong native propensity of the second turn fragment | 71,73 | |
(2) 47DATK50 | 7.00 | 4.494 | ||||
Protein L B1 Domain (1k50) | (1) 13ANGS16 | 5.25 | 3.385 | Weak native-like propensities of both turns | 66,71,74 | |
(2) 51ADKG54 | 1.00 | 2.961 | ||||
Ubiquitin (1ubq) | (1) 7TLTG10 | 7.00 | 2.838 | N-terminal hairpin stable in aqueous methanol and in water | 79,80,84,85 | |
(2) 18EPSD21 | 2.00 | 4.423 | ||||
(3) 38PDQQ41 | 4.50 | 1.834 | ||||
(4) 45FAGK48 | 5.50 | 1.599 | ||||
(5) 51EDGR54 | 3.75 | 2.532 | ||||
(6) 62QKES65 | 3.50 | 2.533 | ||||
Titin I band 27th Domain (1tit) | (1) 14FVGE17 | 4.50 | 2.811 | — | 87,88 | |
(2) 36LKGQ39 | 6.50 | 5.037 | ||||
(3) 44SPDC47 | 4.00 | 2.494 | ||||
(4) 51EDGK54 | 4.75 | 3.800 | ||||
(5) 65LGMT68 | 5.00 | e | ||||
(6) 75AANA78 | 3.00 | 2.650 | ||||
Pin1 WW Domain (1pin) | (1) 17RSSG20 | 5.50 | 7.322 | — | 89,92,93, 94 | |
(2) 26NHIT29 | 5.50 | 6.226 | ||||
SH3 Domain (1srm) | (1) 20TETD23 | 3.75 | 2.388 | Diverging turn (27–30) and distal hairpin (49–52) fragments have native-like conformations | 69,70,96, 98,101,102 | |
(2) 27KKGE30 | 5.00 | 2.594 | ||||
(3) 38TEGD41 | 4.75 | 3.187 | ||||
(4) 49TTGQ52 | 2.75 | 2.417 | ||||
CRABP I (1cbr) | (1) 46DGDQ49 | 4.50 | 2.490 | 123–125 | ||
(2) 56TTVR59 | 6.25 | 2.786 | Strong native-like propensity of 3rd and 4th hairpin fragments | |||
(3) 66KVGE69b | 6.25 | 1.197 | ||||
(4) 75TVDG78 | 7.80 | 2.269 | ||||
(5) 89NENK92 | 4.50 | 2.387 | ||||
(6) 102GDGP105 | 3.25 | 3.454f | ||||
(7) 114ANDE117 | 2.75 | 2.244 | ||||
(8) 124ADDV127 | 2.75 | 2.426 |
Turns shown by protein engineering to form before the transition state in bold italic font.
Average of the conservation scores of the individual turn residues obtained using ConSurf.134
Propensities to form a turn calculated using COUDES.48
Not predicted as a turn in COUDES.
Predicted turn sequence is within the Ω-loop.