SUMMARY
Exposure to Mycobacterium tuberculosis produces varied early outcomes, ranging from resistance to infection to progressive disease. Here we report results from a forward genetic screen in zebrafish larvae that identify multiple mutant classes with distinct patterns of innate susceptibility to Mycobacterium marinum. A hypersusceptible mutant maps to the lta4h locus encoding leukotriene A4 hydrolase, which catalyzes the final step in the synthesis of leukotriene B4 (LTB4), a potent chemoattractant and proinflammatory eicosanoid. lta4h mutations confer hypersusceptibility independent of LTB4 reduction, by redirecting eicosanoid substrates to anti-inflammatory lipoxins. The resultant anti-inflammatory state permits increased mycobacterial proliferation by limiting production of tumor necrosis factor. In humans, we find that protection from both tuberculosis and multibacillary leprosy is associated with heterozygosity for LTA4H polymorphisms that have previously been correlated with differential LTB4 production. Our results suggest conserved roles for balanced eicosanoid production in vertebrate resistance to mycobacterial infection.
INTRODUCTION
M. tuberculosis (Mtb) infection triggers a stereotypic series of host responses. Phagocytes are recruited rapidly to the infection site where they engulf mycobacteria and transport them to deeper tissues (Wolf et al., 2007). Pathogenic mycobacteria can resist early host defenses, allowing them to establish residence in phagocytes (Russell, 2007). Once in tissues, infected macrophages recruit additional macrophages and other immune cells to form granulomas, complex host immune structures within which mycobacteria can persist indefinitely, even in the face of a focused host immune response (Russell, 2007). The interplay between mycobacterium and host draws on multiple pathways, each of which could potentially be modulated to influence outcome. For instance, mycobacteria could be eradicated by the innate immune defenses of phagocytes or counter these defenses to grow within. The forming granuloma could promote bacterial expansion and dissemination resulting in acute disease but may eventually curtail or even eradicate infection as adaptive immunity is invoked (Davis and Ramakrishnan, 2009).
Wide variation in tuberculosis (TB) susceptibility, progression and severity resulting from apparently similar infectious exposures is well-recognized (Cobat et al., 2009). Host factors appear to be major contributors to variation in TB outcomes. Human genetic studies of patients susceptible to infection by normally avirulent mycobacteria have confirmed the importance of the IL-12/IFN-γ circuit in human resistance to mycobacterial infections (Fortin et al., 2007). Analysis of inbred mouse strains and, more recently, of human polymorphisms has suggested that innate immune determinants also play a role in protection from mycobacterial infection in solo and in concert with adaptive immunity (Fortin et al., 2007; Pan et al., 2005). Similarly, host genetics play a critical role in infection outcomes with the related pathogen Mycobacterium leprae, the causative agent of leprosy (Alter et al., 2008). These outcomes range from a typically mild paucibacillary (tuberculoid) form to a severe disfiguring multibacillary (lepromatous) form (Scollard et al., 2006).
Zebrafish larvae infected with their natural pathogen M. marinum (Mm), a close genetic relative of Mtb, have proved useful in understanding mycobacterial pathogenesis and immunity (Tobin and Ramakrishnan, 2008). Zebrafish, like mammals, are dependent on adaptive immunity for maximal control of TB (Swaim et al., 2006). However, only innate immunity is operant in the larval stages, allowing assessment of the contribution of innate immunity to resistance and pathogenesis (Davis et al., 2002). The larvae are optically transparent, allowing visualization of the early steps of mycobacterial infection in whole live animals (Davis et al., 2002). This real-time monitoring combined with reverse genetic analysis of known host determinants (e.g. Tumor Necrosis Factor) has led to an expanded understanding of the innate immune response to mycobacterial infection (Clay et al., 2008; Volkman et al., 2010). Here, we have exploited the genetic tractability of the zebrafish to conduct a forward genetic screen, directly identifying, in vivo, host determinants of resistance to infection. We have used a positional cloning approach to identify lta4h as a susceptibility locus. Then by combining real-time imaging with genetic and small molecule interception of relevant pathways, we have revealed a role for LTA4H in regulating the balance between pro- and anti-inflammatory eicosanoid derivatives of arachidonic acid (Serhan, 2007). Finally, we have extended our findings to uncover associations between human LTA4H polymorphisms influencing levels of LTB4 production and susceptibility to two human mycobacterial diseases: TB in a Vietnamese population and leprosy in a Nepali population.
A Genetic Screen Yields Three Mutant Classes
We performed a gynogenetic diploid screen on zebrafish larvae (Beattie et al., 1999) (Figures 1A and 1B). Briefly, eggs were squeezed from F1 mothers heterozygous for N-ethyl-N-nitrosourea (ENU)-mutagenized chromosomes. Haploid embryos were subjected to early pressure to generate fully diploid embryos whose only genetic contribution was maternal. Clutches of 20–50 larvae each from 355 independent F1 females were infected with 150–250 green fluorescent Mm and assessed by fluorescence microscopy at four days post infection (dpi). By four dpi, wildtype (WT) infection is consistently characterized by the presence of individual infected macrophages as well as discrete early granulomas (organized aggregates of differentiated macrophages) (Davis et al., 2002) (Figures 1C, 1E and 1G).
Three mutant classes emerged from our screen (Figures 1D, 1F, and 1H). The first class had abundant infected macrophages, despite which they formed no or limited granulomas even when challenged with high infection doses for longer periods (Figures 1C, 1D, 1I and 1J). This host mutant phenotype is reminiscent of infections with the attenuated bacterial mutant lacking the RD1/ESX-1 secretion system, or zebrafish deficient in matrix metalloproteinase 9 (MMP9) in which granulomas do not form despite abundant bacterial growth within individual macrophages (Volkman et al., 2009). Preliminary observations suggested that these mutants have attenuated infection, similar to the bacterial RD1/esx-1 and host MMP9 deficiencies. The second mutant class displayed resistance to infection that was apparent at an earlier step of pathogenesis, with reduced bacterial burdens in individual macrophages even prior to granuloma formation (Figure 1F). This phenotype could be due to enhanced macrophage microbicidal capacity, perhaps resulting from mutations in innate immunoregulatory pathways (Liew et al., 2005).
The third and most common mutant class was hypersusceptible to Mm infection, displaying increased bacterial growth relative to WT siblings (Figures 1G and 1H), a phenotype similar to that seen when macrophages are absent or when TNF signaling is abrogated (Clay et al., 2007; Clay et al., 2008). Thus, this screen identified multiple mutant classes with mycobacterial susceptibility phenotypes predicted by observational studies in the zebrafish and by human epidemiological studies suggesting that some individuals may clear TB even before the onset of adaptive immunity (Cobat et al., 2009).
Mutant Mapping via a Bacterial Cording Phenotype
As first described by Koch in 1882 (Koch, 1882), virulent Mtb in culture takes on a distinctive corded appearance characterized by intertwined serpentine rope-like structures (Middlebrook et al., 1947). Long an in vitro correlate of virulence, cording was recently recognized to occur in vivo under circumstances in which Mm grows extracellularly rather than within macrophages (Clay et al., 2008). In the hypersusceptible mutant fh112, we found that the areas of increased bacterial growth (Figure 1H) displayed bacterial cording (Figure 2A) which was seldom detected in WT siblings, and which followed the expected Mendelian frequencies in crosses between fh112/+ heterozygotes (Figure 2B). We could therefore use bacterial cording as a sensitive and specific reporter to map fh112 after crossing to the polymorphic WT WIK strain. Mutants were selected from infected progeny of heterozygous carrier crosses based on the presence of cording at four dpi. We mapped fh112 to a region of zebrafish chromosome 4, between the marker z10062 and a SNP in a zebrafish ortholog of the PRKWNK1 gene (Figure 2C). The physical region defined by this interval contains several genes, including the zebrafish ortholog of the leukotriene A4 hydrolase (lta4h) gene, known to be involved in pro-inflammatory eicosanoid synthesis in mammals (Figure S1) (Haeggstrom, 2004) and we pursued this gene as a leading candidate.
Analysis of lta4h expression in WT and fh112 mutant fish showed that while lta4h mRNA was not induced by infection in WT fish, lta4h mRNA was decreased approximately 10-fold in infected mutants as compared to WT siblings (Figure 2D). However, when we sequenced the coding region and exon/intron boundaries of all 19 exons of lta4h in fh112 mutants (Figure S1B) we found no mutations, suggesting that fh112 might be a mutation in a regulatory region. To rule out the alternative possibility that the mutation lay in a neighboring locus and had indirect effects on lta4h expression, we searched for a second, molecularly identifiable lta4h allele. We identified a zebrafish line with a 7 kb retroviral insertion in the seventh exon of lta4h from a commercially available library of frozen sperm (Figure 2E and Figure S1B). The retroviral insertion zm5961 decreased lta4h mRNA levels in both infected and uninfected larvae (Figure 2D). Analysis of mRNA remnants in the zm5961 mutant identified an mRNA species that includes an in-frame deletion, corresponding to 88 amino acids (Figure S1B). Progeny from a zm5961/+ incross showed the expected increased frequency of cording (Figures S1C and S1D). We confirmed that fh112 is an allele of lta4h by performing complementation analysis with the fh112 and zm5961 mutants. Heterozygous crosses of fh112/+ animals with zm5961/+ animals resulted in substantial cording at five dpi (Figure 2B). Control crosses of animals heterozygous for either allele with WT animals showed no cording, even with inocula as high as 350 CFU (data not shown; n=21 for fh112/+ and n=17 for zm5961/+, respectively).
We next characterized lta4h expression pattern in both WT and mutant larvae. In mammals, lta4h is expressed in myeloid cells (Peters-Golden and Henderson, 2007). Fluorescent in situ hybridization analysis in two days post-fertilization (dpf) uninfected zebrafish revealed expression in a phagocyte population of the caudal hematopoietic tissue that corresponds to both macrophages and neutrophils (Murayama et al., 2006) (Figure 2F). We confirmed that there was no reduction in macrophage and neutrophil numbers in uninfected three dpf zm5961 homozygotes by neutral red staining and Sudan black staining, respectively (Figure S2A–D) (Herbomel et al., 2001; Le Guyader et al., 2008). However, lta4h expression was weakly or not detectable in phagocytes of zm5961 homozygotes compared to their WT or heterozygous siblings (data not shown). Moreover, zm5961/fh112 heterozygotes had reduced expression compared to siblings with one WT lta4h allele, confirming the non-complementation results observed for the infection phenotype (Figure 2G).
We characterized further the effect of lta4h on susceptibility by using morpholino oligonucleotides (MO) (Nasevicius and Ekker, 2000) to inhibit its translation. Injection of the lta4h MO resulted in phenocopy of the fh112 mutant hypersusceptibility (Figure 3A and Figure 1H). Compared to controls, bacterial burden in lta4h morphants was increased 1.7 ± 0.3 (SEM) fold very early after infection, prior to granuloma formation and 7.6 ± 2.0 (SEM) fold at six dpi (Figure 3B). This increased bacterial burden corresponded to increased mortality among infected morphants and increased bacterial cording (Figure 3C–E). In summary, we mapped fh112 susceptibility to the lta4h locus and show that reduced phagocyte expression of lta4h correlates with early susceptibility, increased extracellular bacterial growth and cording. Finally, similar to genetic lta4h deficiency, treatment of WT fish with 100 µM of the LTA4H inhibitor bestatin resulted in increased bacterial growth with cording (Figure 3F–H) (Orning et al., 1991).
lta4h Interacts with the TNF Signaling Pathway
Previously, we had observed bacterial cording in two host gene knockdowns that altered pathogenesis at discrete steps: in macrophage-deficient (PU.1) morphants, and in TNF signaling deficiency produced by the TNF-receptor 1 (TR1) MO (Clay et al., 2007; Clay et al., 2008). The known functions of LTB4 as a macrophage chemoattractant and a proinflammatory molecule suggested that lta4h cording could be related to either the PU.1 or TR1 morphant mechanisms. We asked whether lta4h deficiency reduces macrophage chemoattraction to infecting bacteria, thereby promoting extracellular bacterial growth and cording. We confirmed that LTB4 functions as a macrophage chemoattractant in the zebrafish: its injection into the hindbrain ventricle (HBV) of WT larvae (Figure 1A) induced rapid recruitment of macrophages (Figure 4A; Movie S1). However, lta4h deficiency induced by MO treatment of either WT or mutant larvae compromised neither mycobacterially-induced recruitment to the HBV nor bacterial phagocytosis (Figure 4B, Figure S2E and S2F). Thus macrophage recruitment or phagocytosis defects were unlikely to be the cause of hypersusceptibility of lta4h deficient animals.
We next assessed if the lta4h mutation impacts the TNF pathway, critically important for resistance to mycobacteria in humans, mice and zebrafish (Clay et al., 2008; Flynn et al., 1995; Keane et al., 2001). We confirmed that LTB4 induces TNF expression in WT zebrafish as in mammals (Goldman et al., 1993). Injection of ~1.5×10−14 mol LTB4 into the caudal vein of uninfected larvae induced tnf mRNA expression in WT embryos 3.6 ± 0.7 (SEM)-fold over mock at 2.5 hours. In infected larvae, lta4h mRNA and tnf mRNA were both expressed early in granuloma macrophages (Figure 4C). However lta4h deficient fish had reduced induction of TNF upon infection. When we separated infected fh112 mutants and their WT siblings from a heterozygous incross based on cording at four dpi, we found 3.7 ± 1.3 (SEM) fold less tnf mRNA in the mutants. To assess whether tnf reduction occurred early in infection, we used the molecularly-identifiable zm5961 allele; infected zm5961 animals expressed 7.3 fold less tnf mRNA than WT at one dpi (Figure 4D).
Next we detailed the infection phenotypes of lta4h–deficient larvae to determine if they shared specific attributes of TNF signaling-deficient animals. We previously identified the primary consequence of TNF deficiency to be increased bacterial growth within macrophages leading to increased granuloma formation followed by necrotic death of the infected macrophages (Clay et al., 2008). The Mm erp mutant is attenuated for intracellular growth within individual macrophages, and its attenuation and macrophage growth defect are rescued by TNF signaling blockade (Clay et al., 2008). Similarly, infected lta4h morphant embryos allowed increased overall growth of the erp mutant (Figures 4E and 4F), also showing increased bacterial growth in individual macrophages even prior to granuloma formation (Figure 4G). Second, lta4h deficiency induced accelerated kinetics of granuloma formation similar to TNF deficiency (Figure 4H–J)(Clay et al., 2008). Finally, granulomas in lta4h–deficient animals became acellular as evidenced by loss of neutral red staining (Figure 4K–M). Again similar to the TNF deficiency phenotype, the baseline apoptotic death in the granulomas was unchanged (Figure S3), suggesting that the necrotic death of granuloma macrophages was responsible for cording (Clay et al., 2008). Thus, lta4h morphants reproduced the TNF signaling deficiency phenotype.
To look for a genetic interaction between lta4h and the TNF pathway we asked whether a hypomorphic lta4h allele could serve as a genetic enhancer of altered TNF signaling. We produced TR1 or control morphants on either a WT or zm5961 background. We infected all four groups with a low Mm inoculum that, at four dpi, did not yield increased bacterial burdens in either the TR1 deficient or lta4h deficient animals alone (Figure 4N). However, in combination, these two sub-phenotypic deficiencies resulted in increased bacterial burdens, suggesting a genetic interaction (Figure 4N). In sum, our data suggest that lta4h deficiencies interact genetically with the TNF signaling pathway, compromise TNF induction during infection and recapitulate the signature infection phenotypes of TNF signaling defects.
lta4h Deficiencies Result in an Immunoregulatory Phenotype
Having found that exogenous LTB4 causes rapid induction of tnf mRNA, we asked if it could rescue the hypersusceptibility of lta4h deficiencies. We were surprised to find that it did not (Figures S4A and S4B). LTB4 administration also failed to rescue the tnf mRNA induction defect in infected morphants (Figure 5A). These findings suggested that the hypersusceptibility observed in lta4h deficient animals occurs via induction of immunoregulatory pathways rather than directly by lack of LTB4-induced proinflammatory functions. This immunoregulatory mechanism appears to be operant prior to infection, as LTB4 failed to induce tnf expression even in uninfected morphants (Figure 5B).
The importance of anti-inflammatory eicosanoids is being recognized increasingly (Serhan, 2007) and we considered the possibility that they mediate the hypersusceptibility of lta4h deficient animals. Lipoxins are structurally related to the leukotrienes and can be synthesized via common intermediates and pathways (Figure 5C). Lipoxin A4 (LXA4) can be generated directly from an LTA4 intermediate by either 12- or 15-lipoxygenase (12-LO; 15-LO) (Figure 5C), and both LXA4 and LTB4 are major eicosanoid products of adult fish macrophages (Pettitt et al., 1991; Serhan, 2007). We hypothesized that, in the absence of LTA4H, accumulating LTA4 is redirected to LXA4 production. Both LTB4 and LXA4 are induced during human and mouse TB (Bafica et al., 2005; el-Ahmady et al., 1997). 5-lipoxygenase (5-LO)-deficient mice lacking both LTB4 and LXA4 are resistant to Mtb, and administration of LXA4 analogs restores susceptibility (Bafica et al., 2005). Moreover, in tissue culture assays virulent Mtb promotes necrosis of human macrophages via LXA4 production (Chen et al., 2008; Divangahi et al., 2009). Finally, a chemical inhibitor of LTA4H increases lipoxin production in a mouse model of zymosan-induced peritonitis (Rao et al., 2007). Therefore, we sought to determine if lta4h mutant hypersusceptibility is due to the engagement of anti-inflammatory mechanisms accessed by increased lipoxin production.
Since mammalian studies suggest that lipoxins increase nitric oxide production, we compared inducible nitric oxide synthase (iNOS) expression in four dpi WT and zm5961 fish by antibody staining (Clay et al., 2008; Paul-Clark et al., 2004). zm5961 mutants had more iNOS-producing cells overall (2.2 fold over WT, P=0.008) as well as within granulomas (2.3 fold over WT, P=0.01) (Figures 5D and 5E), consistent with lipoxin excess in the mutants.
Next we took advantage of a well-characterized effect of lipoxins in mammals: the specific inhibition of neutrophil (and not macrophage) migration (Serhan, 2007). To determine if this lipoxin-mediated effect exists in the zebrafish, we injected LTB4, a potent neutrophil chemoattractant, into the ear of WT larvae (Figure 1A), to which neutrophils migrate in response to Escherichia coli injection (Le Guyader et al., 2008). LTB4 injection resulted in rapid neutrophil recruitment that was inhibited by the LTB4 receptor blocker U75302 (Figures 5F and 5G and Figure S4C). U75302 did not produce hypersusceptibility to infection, adding to the evidence that susceptibility did not stem directly from LTB4 deficiency (Figure S4D).
LTB4-induced neutrophil migration was reduced by pre-administration of the lipoxin epimer 15-epi-LXA4 into the caudal vein (Figures 5F and 5G). If the lta4h deficiency phenotype derives from a functional excess of lipoxins, then a similar effect should be apparent in lta4h–deficient fish. Both uninfected and infected morphants and mutants recruited fewer neutrophils than their WT counterparts (Figure 5H). Infection by virulent Mtb is itself reported to induce lipoxin production in cultured human macrophages (Chen et al., 2008). We too found reduced neutrophil recruitment upon infection of WT fish, consistent with infection-induced lipoxin production (Figure 5H). Yet, lta4h deficiencies produced a further reduction in neutrophil migration, suggesting substantial host-regulated lipoxin production. Reduction in LTB4-induced neutrophil migration was also seen with chemical inhibition of LTA4H using bestatin (Figure S4E).
Since LXA4 biosynthesis is dependent upon the activity of 12- or 15-lipoxygenases (Serhan, 2007)(Figure 5C), we asked if the neutrophil migration defect of the lta4h mutant was reversed by inhibiting these enzymes. Administration of 1 µM of the 15-lipoxygenase inhibitor PD146176 increased LTB4-induced neutrophil migration to WT levels (Figure 5I). Notably, there appears to be a baseline lipoxin production in WT fish as PD146176 also increased their neutrophil recruitment to LTB4 (Figure 5I). Finally, consistent with the specificity of lipoxins in reducing neutrophil and not macrophage migration (Serhan, 2007), we found no significant difference in LTB4-induced macrophage migration to the HBV between WT and zm5961 animals (Figure S4F). Thus, multiple lines of evidence pointed to a lipoxin excess in lta4h–deficient animals that was present at baseline and persisted during infection.
If lta4h deficiency compromises resistance to infection due to the observed lipoxin excess, then exogenous lipoxin should recreate the relevant infection phenotypes. A single intravenous dose of LXA4 administered three days after infection resulted in a 3.2 fold decrease (P=0.006) in tnf mRNA levels eight hours later (Figure 5J). To determine if this lipoxin-induced TNF reduction was relevant for infection, we administered LXA4 by caudal vein injection every 12 hours for four days starting one day after infection. LXA4 treatment resulted in increased bacterial burden (Figure 5K) and cording frequency (Figures 5L and 5M).
In summary, despite the product of LTA4H being the strongly pro-inflammatory LTB4, the predominant effect of lta4h deficiency during early mycobacterial infection likely results from increased lipoxins that dampen TNF-mediated protection. Additionally, the greater reduction in LTB4-mediated neutrophil migration in the uninfected zm5961 mutant than in the lta4h morphant in Figure 5H suggested a graduated relationship between LTA4H and TNF levels that would directly modulate susceptibility. To test this, we assessed tnf mRNA levels at one day post-infection in embryos injected with increasing doses of the lta4h MO. Increasing MO doses correlated inversely with tnf levels in the infected morphants suggesting that LTA4H activity levels may determine the extent of TNF induction at early timepoints (Figures S4G and S4H).
Polymorphisms at LTA4H and Susceptibility to Tuberculosis and Leprosy in Human Populations
Our data suggest that zebrafish LTA4H activity orchestrates the balance of pro-and anti-inflammatory eicosanoids so as to affect innate immune resistance to mycobacterial infection. We hypothesized that polymorphisms affecting levels of leukotriene and lipoxin production in humans might influence susceptibility to mycobacterial diseases. Single nucleotide polymorphisms (SNPs) at the human LTA4H locus (Figure 6A and 6B) define a haplotype associated with significant differences in LTB4 levels following ionomycin stimulation of granulocytes of healthy individuals (Helgadottir et al., 2006). We examined whether these LTA4H polymorphisms were associated with susceptibility to TB and another major mycobacterial disease, leprosy.
DNA samples from well-characterized individuals from a previous case-control study of TB in Vietnam were available for analysis (Hawn et al., 2006). We genotyped six LTA4H SNPs in 692 cases and 759 controls from this cohort (Table 1). At all six SNPs, genotypes conformed to Hardy Weinberg Equilibrium (HWE) in the control series, but deviated significantly from HWE in the case series. At each site among the cases, fewer heterozygotes were present than expected by HWE expectation, suggesting that heterozygosity at this locus might be protective against TB.
Table 1.
SNP | Group | N | Genotype frequency | HWEb | Heterozygosity model | ||||
---|---|---|---|---|---|---|---|---|---|
00a | 01a | 11a | P value | ORc | P value | P adjd | |||
Tuberculosis in Vietnam | |||||||||
rs1978331 T/C | TB | 657 | 0.406 | 0.397 | 0.196 | <0.0001 | 0.71 | 0.002 | 0.011 |
Controls | 748 | 0.350 | 0.480 | 0.170 | 0.83 | ||||
rs17677715 T/C | TB | 640 | 0.988 | 0.009 | 0.003 | <0.0001 | 0.69 | 0.476 | ns |
Controls | 741 | 0.987 | 0.013 | 0.000 | 0.85 | ||||
rs2247570 A/G | TB | 658 | 0.891 | 0.093 | 0.017 | <0.0001 | 0.66 | 0.017 | ns |
Controls | 743 | 0.860 | 0.133 | 0.007 | 0.59 | ||||
rs2660898 T/G | TB | 658 | 0.353 | 0.400 | 0.248 | <0.0001 | 0.64 | 0.00004 | 0.0003 |
Controls | 751 | 0.277 | 0.509 | 0.214 | 0.56 | ||||
rs2660845 G/A | TB | 645 | 0.310 | 0.428 | 0.262 | 0.0003 | 0.84 | 0.099 | ns |
Controls | 724 | 0.314 | 0.472 | 0.214 | 0.22 | ||||
rs2540475 C/T | TB | 660 | 0.529 | 0.364 | 0.108 | 0.003 | 0.82 | 0.068 | ns |
Controls | 739 | 0.497 | 0.411 | 0.092 | 0.66 | ||||
Leprosy in Nepal | |||||||||
rs1978331 T/C | MB w/o ENL* | 436 | 0.336 | 0.435 | 0.229 | 0.01 | 0.62 | 0.001 | |
MB w/ ENL* | 120 | 0.258 | 0.492 | 0.250 | 0.81 | 0.78 | 0.24 | ||
PB* | 328 | 0.274 | 0.555 | 0.171 | 0.05 | ||||
rs2660898 T/G | MB w/o ENL* | 386 | 0.509 | 0.372 | 0.120 | 0.01 | 0.7 | 0.021 | |
MB w/ ENL* | 113 | 0.372 | 0.504 | 0.124 | 0.42 | 1.21 | 0.38 | ||
PB* | 315 | 0.466 | 0.457 | 0.078 | 0.18 |
Multibacillary leprosy (MB) without or with erythema nodosum leprosum (ENL); paucibacillary leprosy (PB)
For each SNP, 0 represents the allele associated with higher levels of LTB4 (Figure 6A)
P values for deviations from Hardy Weinberg Equilibrium (HWE)
For each SNP, odds ratios (OR) calculated for heterozygosity (01) versus homozygosity (00+11) for cases versus controls
P values adjusted by Bonferroni correction for multiple tests
See also Tables S1 and S2.
Comparison of frequencies of heterozygotes versus homozygotes among TB cases and controls yielded odds ratios (ORs) <1.0 at all six SNPs (Table 1). Adjusting for multiple comparisons, association of heterozygosity and lower incidence of TB were significant at rs1978331 and rs2660898, the two SNPs intragenic in LTA4H with common minor allele frequencies. The heterozygous effect remained after adjusting for gender and age (Table S1). A strong association of heterozygosity with lower incidence of TB was also noted for 2-SNP haplotypes constructed from rs1978331 and rs2660898 (OR = 0.65, P = 0.0003, Table S2). Heterozygosity at LTA4H was associated with protection from both pulmonary and meningeal TB (Table S2), consistent with the early involvement of the pathway in mycobacterial pathogenesis revealed in the zebrafish (Figure 3B).
Meningeal TB carries a high mortality (Thwaites et al., 2000): 27 of 209 patients or 13% in this cohort. We tested whether heterozygosity at LTA4H was associated with mortality among the patients with meningeal TB (Figure 6C). Among meningeal TB patients heterozygous at both intragenic SNPs at LTA4H, mortality was 4%, whereas among meningeal TB patients not heterozygous at these two sites, mortality was 16% (P=0.025).
In order to test whether heterozygosity at LTA4H protected against another mycobacterial disease in a different population in a different environment, we evaluated a cohort of persons with leprosy in Nepal (Misch et al., 2008). The ability of host macrophages to control mycobacterial growth is an important determinant of whether an individual exposed to M. leprae develops low burden (paucibacillary) versus severe (multibacillary) leprosy (Scollard et al., 2006). Furthermore, TNF appears to protect exposed persons from developing multibacillary leprosy yet is implicated in development of hypersensitivity (erythema nodosum leprosum, or ENL) in a subset of patients with multibacillary disease (Scollard et al., 2006). Given the central role of TNF signaling in the lta4h–associated phenotype of the zebrafish, we evaluated the leprosy patients in three groups, defined by paucibacillary leprosy (the baseline exposed group), multibacillary leprosy without ENL, and multibacillary leprosy with ENL.
To evaluate associations of heterozygosity at LTA4H with leprosy, we genotyped only rs1978331 and rs2660898, the two SNPs for which heterozygosity was associated with protection from TB with significant P values after correction for multiple tests. Among the leprosy patients, genotypes at each SNP conformed to Hardy Weinberg Equilibrium for persons with paucibacillary leprosy or with multibacillary leprosy with ENL, but not for persons with multibacillary leprosy without ENL, among whom there were fewer heterozygotes than expected (Table 1). Odds ratios for association of heterozygosity with protection from multibacillary leprosy without ENL were <1.0 and significant for both SNPs. The association of heterozygosity with lower incidence of multibacillary leprosy without ENL was retained for 2-SNP haplotypes constructed from rs1978331 and rs2660898 (OR = 0.68, P = 0.016, Table S2). Heterozygosity at LTA4H was not associated with multibacillary leprosy with ENL response. In this subset of patients, exposures to other infections and/or genetic factors other than LTA4H may lead to elevated levels of TNF and other cytokines, so as both to abrogate the protective effect of heterozygosity at LTA4H and to stimulate hypersensitivity.
Findings from the TB and leprosy studies together suggest association of genetic variation at LTA4H with human mycobacterial disease. For tuberculosis, heterozygosity at LTA4H was associated with protection from infection and with lower mortality among patients with severe disease. For leprosy, heterozygosity at LTA4H confers protection from development of severe disease among exposed persons.
DISCUSSION
The zebrafish/Mm infection model has enabled detailed analysis of the key milestones of mycobacterial infection affected by genetic perturbations in a live, transparent organism. The emergent mutant classes from our screen expand our understanding of pathogenesis during the innate immune response to infection and confirm predictions from human epidemiological studies on humans following exposures to Mtb (Cobat et al., 2009).The granuloma-defective mutants reinforce our recent findings with the bacterial RD1 and host MMP9 mutants that early granuloma formation favors bacterial expansion rather than restricting infection (Davis and Ramakrishnan, 2009; Volkman et al., 2010). Mapping of their affected loci may lead to other host determinants that enhance granuloma formation. Similarly, the class of resistant mutants with more restricted bacterial growth may lead to immunoregulators that limit mycobacterial clearance
Unexpectedly, our analysis of the hypersusceptible lta4h mutant has also uncovered an immunoregulatory pathway, in this case increased immunoregulation likely via a functional excess of the anti-inflammatory lipoxins. While virulent mycobacteria can induce lipoxins (Chen et al., 2008), this mycobacterially-induced lipoxin production is not saturating. LTA4H deficiency can increase anti-inflammatory activity further to the dramatic detriment of the host. Indeed we find that the anti-inflammatory state of lta4h mutants precedes mycobacterial infection; baseline lipoxin excess in the uninfected state limits TNF production from early in infection. Host interactions with commensal flora may trigger this baseline lipoxin excess in lta4h deficient hosts making them unable to mount a fully effective pro-inflammatory response early after mycobacterial exposure.
This work suggests that LTA4H activity, while required for LTB4 pro-inflammatory functions in a variety of circumstances, serves to determine levels of key anti-inflammatory molecules in early TB. Thus LTA4H may operate as a genetically encoded rheostat within an eicosanoid circuit, influencing the relative amount of LXA4 produced from LTA4 (Figure 7).
Our analyses of mycobacterial diseases in human populations extend this model. We observe significant associations of heterozygosity at the LTA4H locus with protection from TB in a Vietnamese cohort, and with protection from multibacillary leprosy in a Nepali cohort. Heterozygosity for haplotypes associated with lower versus higher production of LTB4 may reflect an optimal balance of pro- and anti-inflammatory eicosanoids during mycobacterial infection. LTA4H genotypes associated with lower LTB4 production may be deficient in TNF-mediated protection from mycobacterial infection, as in the zebrafish, resulting in clinical TB or more severe leprosy. At the same time, LTA4H genotypes that maximize pro-inflammatory responses may experience increased susceptibility through increased immunopathology (Figure 7).
Mycobacterial infection itself induces LTB4 (Bafica et al., 2005; el-Ahmady et al., 1997) and is recognized to mediate virulence via induction of host immunopathology (Kaushal et al., 2002; Steyn et al., 2002). In BCG-infected TNF-deficient mice, an optimal TNF replacement dose decreases bacterial burdens and increases mouse survival; greater doses of TNF decrease bacterial burden yet diminish host survival by induction of immunopathology (Bekker et al., 2000). Moreover, a recent study implicates a mycobacterial adenylate cyclase in promoting virulence and immunopathology through increased TNF levels (Agarwal et al., 2009).
Immunosuppressive agents have long been used as adjuvant treatment for certain forms of TB and TB recalcitrant to therapies. These include corticosteroids, TNF blocking agents and most recently agent intercepting certain leukotriene pathways (Blackmore et al., 2008; Hardwick et al., 2006; Thwaites et al., 2004). Another immediate clinical implication of these findings is that among patients with TB meningitis, LTA4H genotypes may influence outcome. Our findings underscore the potential for pharmacological agents that modulate lipoxins and other immunoregulators to obtain maximal control of mycobacterial infection.
EXPERIMENTAL PROCEDURES
Zebrafish and Bacterial Strains
Wild-type AB zebrafish larvae were maintained and infected by microinjection into the caudal vein or HBV as described (Cosma et al., 2006). Mm strain M (ATCC #BAA-535) and mutants derived from it that were rendered red or green fluorescent were used (Clay et al., 2008; Cosma et al., 2006). Bacterial counts were determined by plating (Clay et al., 2008) or by quantitating fluorescence pixel counts in live animals as detailed in Supplemental Experimental Procedures.
Zebrafish Mutagenesis, Screening and Positional Cloning
Early pressure gynogenetic diploids were generated (Johnson et al., 1995) and infected by caudal vein injection at 48 hours post-fertilization (hpf) with 150–200 green fluorescent bacteria. Putative mutants were outcrossed to the WT WIK strain and mutants and carriers identified by random crosses between siblings. Bulk segregant analysis was performed on mutant progeny and phenotypically WT animals collected from incrosses (Bahary et al., 2004). The retroviral insertion mutant zm5961 was identified from a sperm library maintained by Znomics (Portland, OR).
lta4h MOs
MOs were obtained from Genetools (Eugene, OR) and injected at the one- to four-cell stage as described (Clay et al., 2008).
In situ Hybridization and Antibody Staining
Fluorescent in situ hybridization was performed as described (Clay et al., 2007; Clay et al., 2008) and detailed in Supplemental Experimental Procedures. Antibody staining for MPO and iNOS was performed as described (Clay et al., 2007; Clay et al., 2008). For Annexin V staining, a 1/10 dilution of Annexin V-AlexaFluor 488 (Invitrogen) was microinjected into the caudal vein of 4 dpi animals and quantitation was performed four hours later.
Neutral Red and Sudan Black Staining
Neutral red and Sudan black staining was performed as described (Herbomel et al., 2001; Le Guyader et al., 2008).
Leukotriene B4 and Lipoxin Injections
Leukotriene B4 (Cayman Chemical), Lipoxin A4 (Calbiochem) or 15-epi Lipoxin A4 (Calbiochem) was microinjected at the concentrations indicated into the hindbrain, caudal vein or right ear as described (Cosma et al., 2006; Le Guyader et al., 2008) and detailed in Supplemental Experimental Procedures (Cosma et al., 2006; Le Guyader et al., 2008)
Eicosanoid Pathway Inhibitors
Bestatin (Cayman Chemical), U75302 (BIOMOL) or PD-146176 (BIOMOL) were administered by soaking starting at 2 dpf.
Clinical Studies
The case-control study of TB in Vietnam (Hawn et al., 2006) and the case-case comparison study of leprosy in Nepal (Misch et al., 2008) have been previously described.
All protocols were carried out in accordance with human subjects review committees at each site, the Oxford Tropical Research Ethics Committee, the Nepal Health Research Council, the University of Washington (Seattle, WA), the University of Medicine and Dentistry of New Jersey (Newark, NJ), and the Western Institutional Review Board (Olympia, WA).
Six SNPs within the LTA4H gene, previously described as part of the HapK haplotype (Helgadottir et al., 2006), were genotyped using MassARRAY (Sequenom), as described (Hawn et al., 2006). Statistical analyses are detailed in Supplemental Experimental Procedures.
Supplementary Material
ACKNOWLEDGMENTS
We thank D. Payan for suggesting the zebrafish, J. Bennett and C.B. Wilson for encouragement and help in obtaining zebrafish facilities, C.N. Serhan for advice on eicosanoids, K. Winglee for developing FPC analysis, A. Carmany-Rampey, P. Grant and C. Miller for setting up early pressure screens, R. Kim and D. Beery for assistance with microinjections, J. Cameron and L. Swaim for fish husbandry, H. Clay for the tnf/fms image and A. Huttenlocher for the mpo antibody. For the human studies, we gratefully acknowledge all participants and the clinical staff of the Hospital of Tropical Diseases (particularly T.T.H Chau and G. Thwaites), Pham Ngoc Thach Hospital for Tuberculosis and Lung Disease (particularly N.H Dung, N.T.B Yen and N.T.N Lan) and Hung Vuong Obstetric Hospital (N.T. Hieu) for facilitating the patient sample collection, M. Janer and S. Li for DNA genotyping, and M.K. Lee for statistical advice. This work was supported by the Burroughs Wellcome Fund (L.R. and T.R.H), the Akibene Foundation, the Keck Foundation and the National Institutes of Health (L.R. and M.C.K.), an American Cancer Society Postdoctoral Fellowship and National Institutes of Health Bacterial Pathogenesis Training Grant (D.M.T.), the Odland Endowment of the University of Washington, Dermatology Foundation Dermatologist Investigator Research Fellowship, National Institutes of Health National Research Service Award, and the American Skin Association (J.C.V.), the Human Frontiers Science Program (G.S.W.), the Dana Foundation (T.R.H. and S.J.D.), the Heiser Program for Research in Tuberculosis and Leprosy (T.R.H), the Wellcome Trust of Great Britain (S.J.D.) and the Leprosy Mission International (D.A.H). C.B.M. is an investigator with the Howard Hughes Medical Institute. M.C.K. is an American Cancer Society Professor.
Footnotes
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