Abstract
Cyclic nucleotide–gated channels mediate transduction of light into electric signals in vertebrate photoreceptors. These channels are primarily controlled by the binding of intracellular cyclic GMP (cGMP). Glutamate residue 363 near the extracellular end of the ion selectivity filter interacts with the pore helix and helps anchor the filter to the helix. Disruption of this interaction by mutations renders the channels essentially fully voltage gated in the presence of saturating concentrations of cGMP. Here, we find that lowering extracellular pH makes the channels conduct in an extremely outwardly rectifying manner, as does a neutral glutamine substitution at E363. A pair of cysteine mutations, E363C and L356C (the latter located midway the pore helix), largely eliminates current rectification at low pH. Therefore, this low pH-induced rectification primarily reflects voltage-dependent gating involving the ion selectivity filter rather than altered electrostatics around the external opening of the ion pore and thus ion conduction. It then follows that protonation of E363, like the E363Q mutation, disrupts the attachment of the selectivity filter to the pore helix. Loosening the selectivity filter from its surrounding structure shifts the gating equilibrium toward closed states. At low extracellular pH, significant channel opening occurs only when positive voltages drive the pore from a low probability open conformation to a second open conformation. Consequently, at low extracellular pH the channels become practically fully voltage gated, even in the presence of a saturating concentration of cGMP.
INTRODUCTION
CNG channels mediate the transduction of light signals to electrical signals in vertebrate photoreceptors. These channels open upon binding intracellular cGMP (Stryer, 1986; Yau and Baylor, 1989; Kaupp and Seifert, 2002; Matulef and Zagotta, 2003; Fu and Yau, 2007; Biel and Michalakis, 2009). The intracellular cGMP concentration is elevated in darkness, and the opening of CNG channels depolarizes the photoreceptor membrane. Light indirectly lowers the intracellular cGMP concentration, thereby closing the channels and hyperpolarizing the photoreceptors. To accomplish this transduction faithfully, CNG channels must be tightly controlled by intracellular cGMP.
Activity of CNG channels is sensitive to extracellular pH (pHo) (Goulding et al., 1992; Root and MacKinnon, 1994). A glutamate residue near the external end of the selectivity filter has been identified as the protonation site because replacing it by a neutral residue eliminates pHo sensitivity in the olfactory CNGA2 channel. Titrating the site reveals various channel states, a phenomenon that has been interpreted in terms of variations in ion conduction (Root and MacKinnon, 1994). Additionally, in the retinal CNGA1 channel, neutral mutations at the corresponding glutamate residue, E363, were shown to render the macroscopic I-V curve outwardly rectifying (Root and MacKinnon, 1993; Eismann et al., 1994; Sesti et al., 1995), a phenomenon that is intuitively consistent with, and had thus been attributed primarily to, alterations in the channel’s conduction properties. We have recently found that mutations at E363 in CNGA1 render the I-V curve rectifying primarily by dramatically enhancing the wild-type channel’s inherent mild voltage sensitivity (Martínez-François et al., 2009). The dramatically enhanced voltage sensitivity does not appear to originate from the positively charged fourth transmembrane segment that functions as the primary voltage sensor in classical voltage-gated ion channels, but rather from the ion selectivity filter region. The following observations offer clues as to the mechanism by which E363 mutations accentuate voltage gating. Mutations at both E363 and Y352 (the latter located in the pore helix) enhance channel voltage sensitivity but in a non-additive manner. Therefore, E363 interacts with the pore helix likely by forming a hydrogen bond. Conceivably, such interaction helps to properly anchor the external end of the selectivity filter. Disrupting this interaction by substituting neutral residues at E363 apparently renders the channels practically fully voltage gated, even in the presence of saturating concentrations of cGMP. Consistent with this interpretation, other mutations in the region around the ion selectivity filter produce similar phenotypes. Mutations at E363 that render CNG channels gated by voltage shift the channels’ gating equilibrium toward closed conformations. Channel open probability increases when depolarization drives the channel pore from a low probability open conformation toward a second open conformation. Evidently, the structure surrounding the selectivity filter has evolved to hold the filter “firmly” in place and thereby suppress significant expression of the inherent voltage-dependent gating of CNGA1. Additionally, some mutations around the selectivity filter cause the channel to exhibit desensitization to cGMP (Mazzolini et al., 2009).
Here, we find that lowering pHo renders CNGA1 channels voltage gated in the presence of a saturating concentration of cGMP. We set out to investigate the underlying mechanism.
MATERIALS AND METHODS
Molecular biology and oocyte preparation
Complementary DNA for CNGA1 (Kaupp et al., 1989) was cloned into the pGEM-HE plasmid (Liman et al., 1992), which was provided by S. Siegelbaum (Columbia University, New York, NY). Mutant cDNAs were obtained through PCR-based mutagenesis and confirmed by DNA sequencing. The cRNAs were synthesized with T7 polymerase (Promega) using linearized cDNA as a template. Oocytes harvested from Xenopus laevis were incubated in a solution containing (in mM): 82.5 NaCl, 2.5 KCl, 1.0 MgCl2, 5.0 HEPES, pH 7.6, and 2–4 mg/ml collagenase (Worthington Biochemical Corporation). The oocyte preparation was agitated at 100 rpm for 40–60 min. It was then rinsed thoroughly and stored in a solution containing (in mM): 96 NaCl, 2.5 KCl, 1.8 CaCl2, 1.0 MgCl2, 5 HEPES, pH 7.6, and 50 µg/ml gentamicin. Defolliculated oocytes were selected and injected with RNA at least 2 and 16 h, respectively, after collagenase treatment. All oocytes were stored at 18°C.
Recordings and solutions
Currents were recorded from inside-out membrane patches of Xenopus laevis oocytes previously injected with the desired cRNA using an amplifier (Axopatch 200B; MDS Analytical Technologies). Macroscopic currents were filtered at 5 kHz and sampled at 50 kHz using an analogue-to-digital converter (Digidata 1322A; MDS Analytical Technologies) interfaced to a personal computer. pClamp 8 software (MDS Analytical Technologies) was used for amplifier control and data acquisition. Wild-type and mutant channels were activated with a saturating concentration (2 mM) of intracellular cGMP, and unless specified otherwise, the currents were elicited by stepping the voltage from the −80-mV holding potential to voltages between −200 and 200 mV in 10-mV increments. Currents in the absence of cGMP were used as template for subsequent offline background current corrections. The background currents were 56.80 ± 5.63 pA at 200 mV and −50.70 ± 5.81 pA at −200 mV (n = 10), comparable to those of uninjected oocytes. Except where specified, phosphate-buffered solutions were used to perform all patch clamp recordings. The solutions contained (in mM): 0.1 EDTA, 10 “Na2HPO4 + NaH2PO4” in a ratio yielding the specified pH, and sufficient NaCl to bring total Na+ concentration to 130 mM. HEPES-buffered solutions contained (in mM): 130 NaCl, 0.1 EDTA, and 5 HEPES; pH was adjusted with NaOH or HCl. To examine potential isotope effects, D2O was used instead of H2O to make recording solutions. For H2O2 experiments, oocytes were incubated before patch recording in storage solution either with 10 mM H2O2 for 2 h or with 10 mU/ml glucose oxidase (GO) and 5 mM glucose for 16–24 h. For dithiothreitol (DTT) experiments, oocytes were incubated before patch recording for 30 min in storage solution containing 20 mM DTT. All chemicals were purchased from Sigma-Aldrich.
Data analysis
G-V curves were calculated by dividing the steady-state current value at each voltage by the electrochemical driving force, and then normalizing to the value at 200 mV. Data analysis and curve fitting were performed with Origin 8.0 (OriginLab Corp.). Molecular models were prepared with PyMOL 1.0 (DeLano Scientific). The figures were made with Origin 8.0 (OriginLab Corp.) and Illustrator CS4 (Adobe Systems Inc.).
RESULTS
Extracellular, not intracellular, protons titrate voltage sensitivity of CNGA1 channels
We first examined the effect of varying pHo on CNGA1 macroscopic currents activated by a saturating concentration of cGMP, while intracellular pH (pHi) was kept at 8.0 (Fig. 1). At high pHo (Fig. 1, A–C) currents develop instantaneously after voltage jumps, and the channels exhibit approximately linear I-V curves (Fig. 1 G). As pHo was lowered, current developed more slowly and became suppressed, inward current much more so than outward current (Fig. 1, D–F). Consequently, the I-V curves exhibit outward rectification (Fig. 1 G). To further illustrate the voltage sensitivity of macroscopic conductance, we calculated the conductance from the current/electrochemical driving force ratio and plotted it against voltage (Fig. 1 H). The channels become largely voltage gated at pHo 4 (Fig. 1, F and H). In these experiments, we used HEPES as buffer. Because commercial HEPES contains a minute amount of contaminants that may block ion channels (Guo and Lu, 2000, 2002), we also performed the above experiments using phosphate as buffer (Fig. 2). Both conditions yielded comparable results (Figs. 1 and 2).
Fig. 3 plots the fraction of current at various pHo for 50 and −50 mV, relative to current at pHo 8. Lowering pHo profoundly suppresses the current, and the apparent pKa for inhibition is lowered with depolarization. Therefore, at positive voltages, a lower pHo is required to suppress the current; at low pHo, a more positive voltage is required to open the channels (Fig. 2 H).
It has been reported that in the presence of cAMP or subsaturating concentrations of cGMP, CNGA1 activity is affected by pHi (Picco et al., 1996; Gavazzo et al., 1997). We thus examined whether pHi also affects CNGA1 activity under our experimental conditions. While keeping pHo at 8.0, lowering pHi to 5 does not significantly affect inward current but suppresses outward current at extreme positive voltages (Fig. 4 A), rendering the I-V curve inwardly rectifying (Fig. 4 C). This latter effect only occurs in HEPES-, not phosphate-, buffered solutions (Fig. 4, B and C). The rectification must therefore reflect voltage-dependent channel block by contaminants in HEPES-buffered solutions. For this reason, all experiments described below were performed in the presence of phosphate-buffered solutions on both sides of the membrane. The above results are in line with the finding of Gavazzo et al. (1997) that altering pHi does not significantly affect CNGA1 activity at saturating cGMP.
The rather slow time course of current development at low pHo suggests that the apparent voltage sensitivity likely reflects proton-induced conformational changes. That is, kinetics of current development are limited by a transition downstream from protonation. If so, the kinetics should not be significantly affected in deuterium oxide (D2O) (Jencks, 1987; Root and MacKinnon, 1994; Lu and MacKinnon, 1995). Indeed, exposing the channels to D2O did not slow the kinetics of current onset; the G-V curve is unaffected, as expected for an equilibrium property (Fig. 5).
Effects of double-cysteine mutations on proton and voltage sensitivity of CNGA1 channels
E363 appears to form, with a residue in the pore helix, a hydrogen bond that suspends the selectivity filter in such a manner that in the presence of a saturating concentration of cGMP, the filter adopts a conductive conformation independent of voltage (Martínez-François et al., 2009). We surmise that when this hydrogen bond is disrupted by lowering pHo, the selectivity filter is no longer properly anchored and requires a positive voltage to help stabilize it in a conductive conformation.
To test this possibility, we tried to engineer interacting cysteine pairs at residue 363 and in the pore helix. E363C mutant channels express no detectable current. We then mutated the 12 residues (347YVYSLYWSTLTL358) within the pore helix of the E363C mutant channel, one at a time, to cysteine. Two double-cysteine mutants, L351C-E363C and L356C-E363C, expressed sufficient macroscopic current for examination. For visual reference, we mapped the relevant CNGA1 residues onto the structure (Long et al., 2007) of the Kv1.2-2.1 chimeric channel (Fig. 6).
CNGA1 channels containing a single L356C mutation exhibit pronounced voltage sensitivity but little pHo sensitivity (Fig. 7 A). This finding suggests that the L356C mutation by itself disrupts proper attachment of the selectivity filter. In contrast, the L356C-E363C double-mutant channels exhibit little voltage or pHo sensitivity (compare Fig. 7 B with Fig. 2). On the basis of the Kv1.2-2.1 structure (Fig. 6) (Long et al., 2007), residue 356 is on the side of the pore helix facing residue 363; hence, formation of a disulfide bond between them is possible. Given its location, the potential disulfide bond would be buried inside the channel protein. We hope that over a relatively long exposure, some DTT molecules in the extracellular solution may be able to penetrate into the protein to open the disulfide bond in a small yet detectable fraction of channels. Indeed, exposing the channels to extracellular DTT for 30 min causes a significant, if modest, reduction in the degree of rectification in L356C-E363C double-mutant channels (Fig. 8 A), namely, a 22.4 ± 1.2% (n = 5) reduction in the ratio of currents at −200 and at 200 mV (I−200/I200), compared with the control (Fig. 8 D). This finding is consistent with DTT treatment reducing the disulfide bond in a fraction of channels. After exposure to extracellular H2O2, the channels’ conductance at −200 mV approached that at 200 mV (compare Fig. 8 B with Fig. 7 B), leading to an increase in I−200/I200 (Fig. 8 D). Indistinguishable results were obtained whether H2O2 was added directly to the extracellular solution (Fig. 8, B and D) or generated locally using the enzyme GO (Fig. 8, C and D). These results are consistent with the possibility that in some channels, the cysteine pair(s) has not spontaneously formed a disulfide bond before the above maneuvers.
As for the L351C channels, they exhibit, like wild type, little voltage sensitivity at high pHo but strong sensitivity at low pHo (Fig. 9 A). Therefore, the L351C mutation by itself does not appear to alter the attachment of the selectivity filter. The L351C-E363C channels, however, exhibit voltage sensitivity at both high and low pHo (Fig. 9 B), a phenotype shared by many mutants with neutral substitutions at E363. According to the Kv1.2-2.1 structure, residue 351 would be located on the side of the pore helix facing away from E363 (Fig. 6). Thus, the L351C mutation seems to simply rescue the E363C mutant but does not appear to form a disulfide bond with E363C. Consistent with the latter possibility, the shape of the G-V curve of L351C-E363C mutant channels was not significantly affected by either DTT or H2O2 (Fig. 10).
DISCUSSION
We find that extracellular protons titrate CNGA1’s voltage sensitivity in such a manner that lowering pHo renders the channels practically fully gated by voltage, even in the presence of saturating concentrations of cGMP. The voltage sensitivity of wild-type channels at low pHo resembles that of mutants with a neutral residue at E363 near the external end of the selectivity filter (Martínez-François et al., 2009). The E363 mutations have been shown to disrupt a hydrogen bond between E363 and probably Y352 in the pore helix. Here, we find that extracellular protons titrate this hydrogen bond, tuning the apparent voltage sensitivity of CNGA1 channels. In fact, a pair of cysteine mutations, E363C and L356C, apparently “locks” the selectivity filter in a conductive conformation that exhibits little voltage and pHo sensitivity (Fig. 7 B). The likely formation of a disulfide bond between E363C and L356C by no means proves that residues E363 and L356 normally interact directly. Instead, it reinforces the notion that loosened attachment of the selectivity filter to the surrounding pore helix allows the channel to exhibit pronounced voltage gating, and that, conversely, proper “firm” attachment minimizes voltage gating.
Previously, we showed that the pronounced voltage gating in various E363 mutant channels can be adequately accounted for by a model with four sequentially related states: two closed (C and CL) and two open (O1 and O2) (Martínez-François et al., 2009) (Fig. 11 A). Sequential (multistep) binding of cGMP drives a channel to the final closed state (CL), whence it may then enter the first open state (O1). Both transitions are assumed to be voltage insensitive. However, state O1 is in voltage-sensitive equilibrium with another open state, O2. In wild-type channels, the voltage-insensitive transition from CL to O1 is energetically favored (i.e., high probability), whereas in mutant channels, O1 is energetically unstable (i.e., low probability) with respect to CL. Strong depolarization (favoring O2) will therefore be required to cause a sizeable fraction of channels to open. Assuming for simplicity that only transitions between O1 and O2 are voltage sensitive, the relative conductance is then given by:
(1) |
where KL = [C][cGMP]n/[CL], K1 = [O1]/[C], K2 = [O2]/[O1], ZK2 is the effective valence associated with the O1–O2 transition, V is the membrane voltage, and F, R, and T have their usual meaning.
At saturating concentrations of cGMP, scheme A (Fig. 11 A) reduces to scheme B (Fig. 11 B), and Eq. 1 to
(2) |
At sufficiently negative voltages, K2exp(ZK2FV/RT) vanishes and Eq. 2 reduces to:
(3) |
that is, K1 governs the height of the voltage-insensitive, asymptotic plateau at negative voltages. The remaining, voltage-sensitive fraction is described by a Boltzmann function with V1/2 = (RT/ZK2F)ln[(K1+1)/K1K2] and valence ZK2. In the limit where K1 becomes sufficiently small (i.e., [O1] is minimal), the conductance plateau at extreme negative voltages vanishes and the conductance becomes voltage gated over its entire range. In such a case, Eq. 2 reduces to a Boltzmann function. The valence ZK2 governs the steepness of the G-V curve; K2 influences only V1/2, not the height of the plateau. Because E363 mutations shift the CL–O1 equilibrium toward CL, strong depolarization is required to drive the channels into O2 to populate open states.
We use the same model to analyze CNGA1’s G-V relation at different pHo. As in the case of E363 mutants, we limit our analysis to the data between 10 and 200 mV because the single-channel i-V curves deviate from linearity at modestly negative voltages (Nizzari et al., 1993; Root and MacKinnon, 1993; Martínez-François et al., 2009). A simultaneous fit of Eq. 2 to the entire dataset yields K2 = 0.38 ± 0.10 and ZK2 = 0.52 ± 0.03 common to all six curves (Fig. 11 C). The values of these two fitted parameters are comparable to those for various mutants with neutral substitutions at E363 (Martínez-François et al., 2009). The fitted K1 values for each individual pHo condition are listed in Table I. Fitting a binding isotherm to the relation between K1 and pHo yields an apparent pKa of 6.2 (Fig. 11 D). Therefore, like neutral substitutions at E363, protonation of E363 lowers K1, shifting the CL–O1 equilibrium toward CL. Strong depolarization is then needed to drive the channels toward O2 to populate open states.
Table I.
pHo | K1 |
4 | 4.6 ± 0.9 × 10−2 |
5 | 9.7 ± 1.4 × 10−2 |
6 | 4.0 ± 0.4 × 10−1 |
7 | 1.1 ± 0.1 |
8 | 1.3 ± 0.2 |
9 | 1.1 ± 0.1 |
In summary, E363 is critical for proper anchoring of the external end of the selectivity filter of CNGA1 to the pore helix. Neutral mutations at E363 disrupt the anchoring and reveal pronounced voltage gating, as does protonation of the residue. A presumed (engineered) disulfide bond between the external end of the selectivity filter and the pore helix minimizes both extracellular proton sensitivity and voltage gating. Protonation of E363, like substitution of a neutral residue at this position, shifts the gating equilibrium toward closed states, whereas strong depolarization drives the channel from a low probability open state to another open state. Consequently, at low pHo, the channel open probability exhibits such pronounced voltage sensitivity that channels are practically fully gated by voltage, even in the presence of a saturating concentration of cGMP.
Acknowledgments
We thank S. Siegelbaum for the CNGA1 channel cDNA clone and P. De Weer for critical review and discussion of our manuscript.
This study was supported by a grant (GM55560) from the National Institutes of Health to Z. Lu. Z. Lu is an investigator of the Howard Hughes Medical Institute.
Christopher Miller served as editor.
Footnotes
Abbreviations used in this paper:
- DTT
- dithiothreitol
- GO
- glucose oxidase
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