Abstract
In the title compound, C16H13NO, the molecules are connected three-dimensionally through non-classical C—H⋯O and C—H⋯π interactions of 3.272 (3), 3.380 (3) and 3.382 (4) Å. Classical hydrogen bonds are not observed. The dihedral angle between the benzyl and quinolin-2(1H)-one mean planes is 87.15 (7)°
Related literature
For related literature, see: Bondensgaard & Jacobsen (1999 ▶); Fürstenberg et al. (2006 ▶); Kovalska et al. (2006 ▶); Martínez & Chacón-García (2005 ▶); Perekalin & Lerner (1951 ▶); Rajnikant et al. (2002 ▶); Schenkel & Aeberli (1957 ▶); Shishkina et al. (2005 ▶); Staerk et al. (1997 ▶); Vasilev et al. (2005 ▶); Vincente et al. (2005 ▶); Zipper et al. (2004 ▶); Sheldrick & Morr (1981 ▶).
Experimental
Crystal data
C16H13NO
M r = 235.27
Monoclinic,
a = 8.984 (2) Å
b = 14.194 (4) Å
c = 10.1785 (16) Å
β = 106.631 (15)°
V = 1243.7 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.08 mm−1
T = 290 (2) K
0.31 × 0.31 × 0.31 mm
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: none
6212 measured reflections
2991 independent reflections
1351 reflections with I > 2σ(I)
R int = 0.053
3 standard reflections frequency: 120 min intensity decay: none
Refinement
R[F 2 > 2σ(F 2)] = 0.055
wR(F 2) = 0.160
S = 0.97
2991 reflections
164 parameters
H-atom parameters constrained
Δρmax = 0.14 e Å−3
Δρmin = −0.16 e Å−3
Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); Mercury (Bruno et al., 2002 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807061727/pr2017sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536807061727/pr2017Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the C11–C16 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C14—H14⋯O1i | 1.13 | 2.37 | 3.272 (3) | 135 |
| C4—H4⋯O1ii | 1.09 | 2.63 | 3.380 (3) | 125 |
| C8—H8A⋯Cg1iii | 1.11 | 2.73 | 3.382 (4) | 165 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The authors thank the National Research Fund of Bulgaria for financial support (grant No. BYX 03.05).
supplementary crystallographic information
Comment
DNA intercalation is one of the interactions of nucleic acids with small organic molecules, through which effective antitumor agents can be designed (Martínez et al., 2005). A relevant area of research is the finding of fluorescent markers for highly sensitive DNA detection (Staerk et al., 1997; Bondensgaard et al., 1999). For the latter application, few cyanine dyes containing quinoline end-groups are established (Zipper et al., 2004), and new representatives with similar and even better efficiency were recently synthesized (Vasilev et al., 2005; Kovalska et al., 2006; Fürstenberg et al., 2006). Herein, we report the structure of (I) which is an oxo-substituted fragment of these dyes – a long known molecule (Perekalin et al., 1951).
In the unit cell of (I), only one independent molecule is present. The bond distances and angles in the benzyl and quinolin-2(1H)-one moieties are comparable to those observed in other quinolinone derivatives (Rajnikant et al., 2002; Vincente et al., 2005; Shishkina et al., 2005). The molecule posses two nearly planar ring systems [r.m.s. deviation of 0.004 (5)Å and 0.021 (4) Å for the benzyl and quinolin-2(1H)-one fragments respectively] which are capable of intercalation, attached to each other in a conformationally fluxional way. The dihedral angle between the benzyl and quinolinone mean planes is 87.15 (7) °.
In the crystal structure of (I), the molecules are connected through non-classical C—H···O hydrogen bonds and CH3-π interactions between methyl and benzyl fragments C8—H8A···Cg1i; Cg1 is the centroid of the 1-Phenyl derivative [symmetry code (i): 1 - x, -1/2 + y, 3/2 - z]. The carbonyl O atom forms a bifurcated hydrogen bond. A head-to-tail C4—H4···O1i [symmetry code (i): x - 1,y,z] interaction between quinolinone fragments build up straight chains along a axis. A side-to-side C14—H14···O1i [symmetry code (i): 2 - x, 1/2 + y, 3/2 - z] interaction forms zigzag chains along b.
Experimental
The title compound was synthesized by dehydro-cyclization (Perekalin et al., 1951) of the respective acetoacetamide (Schenkel et al., 1957). Crystals of (I) suitable for X-ray diffraction were obtained by slow evaporation from toluene.
Refinement
All hydrogen atoms were located in a difference map and were constrained to ride on their parent atoms, with Uiso(H) = 1.5Ueq(Cmethyl) and Uiso(H) = 1.2Ueq(C or N).
Figures
Fig. 1.
View of the structure and the atom-numbering scheme of (I) showing 50% probability displacement ellipsoids. H atoms are shown as small spheres of an arbitrary radii.
Fig. 2.
A view of the molecular packing in (I). All H atoms not involved in the short contact interactions have been omitted for clarity [symmetry codes: (i) 1 + x,y,z; (ii) 2 - x, -1/2 + y, 3/2 - z; (iii) 2 - x, -1/2 + y, 3/2 - z; (iv) 1 - x, 1 - y, 1 - z]. The dotted lines indicate the C—H···O and C—H···π interactions.
Crystal data
| C16H13NO | F000 = 496 |
| Mr = 235.27 | Dx = 1.256 Mg m−3 |
| Monoclinic, P21/c | Melting point: not measured K |
| Hall symbol: -P 2ybc | Mo Kα radiation λ = 0.71073 Å |
| a = 8.984 (2) Å | Cell parameters from 22 reflections |
| b = 14.194 (4) Å | θ = 18.2–19.3º |
| c = 10.1785 (16) Å | µ = 0.08 mm−1 |
| β = 106.631 (15)º | T = 290 (2) K |
| V = 1243.7 (5) Å3 | Cubic, pale yellow |
| Z = 4 | 0.31 × 0.31 × 0.31 mm |
Data collection
| Enraf–Nonius CAD-4 diffractometer | Rint = 0.053 |
| Radiation source: fine-focus sealed tube | θmax = 28.0º |
| Monochromator: graphite | θmin = 2.4º |
| T = 290(2) K | h = 0→11 |
| non–profiled ω/2θ scans | k = −18→18 |
| Absorption correction: none | l = −13→12 |
| 6212 measured reflections | 3 standard reflections |
| 2991 independent reflections | every 120 min |
| 1351 reflections with I > 2σ(I) | intensity decay: none |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.055 | H-atom parameters constrained |
| wR(F2) = 0.160 | w = 1/[σ2(Fo2) + (0.0699P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 0.97 | (Δ/σ)max < 0.001 |
| 2991 reflections | Δρmax = 0.15 e Å−3 |
| 164 parameters | Δρmin = −0.16 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.7036 (2) | 0.45463 (12) | 0.80663 (18) | 0.0468 (5) | |
| C1 | 0.5505 (2) | 0.46557 (16) | 0.8116 (2) | 0.0443 (5) | |
| C6 | 0.4822 (3) | 0.39507 (15) | 0.8725 (2) | 0.0448 (5) | |
| O1 | 0.9282 (2) | 0.37000 (13) | 0.8539 (2) | 0.0763 (6) | |
| C2 | 0.4652 (3) | 0.54564 (16) | 0.7571 (2) | 0.0500 (6) | |
| H2 | 0.5194 | 0.5981 | 0.7165 | 0.060* | |
| C11 | 0.7750 (2) | 0.52552 (15) | 0.7433 (2) | 0.0461 (6) | |
| C5 | 0.3277 (3) | 0.40691 (18) | 0.8733 (2) | 0.0535 (6) | |
| H5 | 0.2882 | 0.3524 | 0.9123 | 0.064* | |
| C4 | 0.2438 (3) | 0.48561 (19) | 0.8192 (2) | 0.0580 (7) | |
| H4 | 0.1196 | 0.4968 | 0.8047 | 0.070* | |
| C10 | 0.7938 (3) | 0.37699 (17) | 0.8615 (3) | 0.0554 (6) | |
| C9 | 0.7218 (3) | 0.30818 (17) | 0.9274 (2) | 0.0580 (7) | |
| H9 | 0.7825 | 0.2518 | 0.9753 | 0.070* | |
| C3 | 0.3150 (3) | 0.55537 (17) | 0.7623 (2) | 0.0570 (6) | |
| H3 | 0.2571 | 0.6117 | 0.7295 | 0.068* | |
| C7 | 0.5753 (3) | 0.31498 (16) | 0.9346 (2) | 0.0519 (6) | |
| C8 | 0.5092 (3) | 0.24147 (17) | 1.0075 (3) | 0.0711 (8) | |
| H8B | 0.4706 | 0.2655 | 1.0736 | 0.107* | |
| H8C | 0.5783 | 0.1853 | 1.0437 | 0.107* | |
| H8A | 0.4026 | 0.2090 | 0.9385 | 0.107* | |
| C16 | 0.7687 (3) | 0.51761 (18) | 0.6074 (3) | 0.0632 (7) | |
| H16 | 0.7009 | 0.4576 | 0.5534 | 0.076* | |
| C13 | 0.9139 (3) | 0.67027 (18) | 0.7559 (3) | 0.0639 (7) | |
| H13 | 0.9747 | 0.7274 | 0.8167 | 0.077* | |
| C14 | 0.9077 (3) | 0.66239 (19) | 0.6202 (3) | 0.0627 (7) | |
| H14 | 0.9663 | 0.7190 | 0.5738 | 0.075* | |
| C12 | 0.8477 (3) | 0.60141 (18) | 0.8181 (3) | 0.0586 (7) | |
| H12 | 0.8565 | 0.5980 | 0.8999 | 0.070* | |
| C15 | 0.8372 (3) | 0.5863 (2) | 0.5463 (3) | 0.0730 (8) | |
| H15 | 0.8372 | 0.5753 | 0.4416 | 0.109 (10)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0390 (10) | 0.0453 (11) | 0.0582 (12) | 0.0007 (9) | 0.0173 (9) | 0.0040 (9) |
| C1 | 0.0376 (12) | 0.0499 (13) | 0.0448 (13) | −0.0019 (10) | 0.0110 (10) | −0.0053 (11) |
| C6 | 0.0473 (13) | 0.0437 (13) | 0.0441 (12) | −0.0056 (11) | 0.0144 (10) | −0.0078 (10) |
| O1 | 0.0509 (11) | 0.0703 (12) | 0.1140 (16) | 0.0136 (9) | 0.0336 (11) | 0.0111 (11) |
| C2 | 0.0456 (13) | 0.0505 (14) | 0.0537 (14) | 0.0008 (11) | 0.0138 (11) | 0.0035 (11) |
| C11 | 0.0373 (11) | 0.0462 (14) | 0.0563 (14) | −0.0004 (10) | 0.0154 (11) | −0.0018 (11) |
| C5 | 0.0496 (14) | 0.0584 (15) | 0.0568 (15) | −0.0079 (12) | 0.0222 (12) | −0.0046 (12) |
| C4 | 0.0417 (13) | 0.0720 (17) | 0.0621 (16) | 0.0004 (13) | 0.0179 (12) | −0.0039 (14) |
| C10 | 0.0476 (14) | 0.0510 (14) | 0.0680 (16) | 0.0056 (12) | 0.0173 (12) | −0.0013 (12) |
| C9 | 0.0574 (15) | 0.0450 (14) | 0.0702 (17) | 0.0051 (12) | 0.0162 (13) | 0.0018 (12) |
| C3 | 0.0446 (14) | 0.0624 (16) | 0.0616 (15) | 0.0084 (12) | 0.0115 (12) | 0.0027 (13) |
| C7 | 0.0576 (15) | 0.0430 (14) | 0.0558 (14) | −0.0060 (12) | 0.0176 (12) | −0.0063 (11) |
| C8 | 0.085 (2) | 0.0497 (15) | 0.0871 (19) | −0.0027 (14) | 0.0388 (17) | 0.0077 (14) |
| C16 | 0.0760 (18) | 0.0561 (15) | 0.0619 (17) | −0.0119 (14) | 0.0268 (14) | −0.0051 (13) |
| C13 | 0.0516 (15) | 0.0549 (15) | 0.0838 (19) | −0.0149 (12) | 0.0171 (14) | −0.0095 (14) |
| C14 | 0.0551 (15) | 0.0554 (16) | 0.084 (2) | −0.0032 (13) | 0.0309 (14) | 0.0065 (14) |
| C12 | 0.0526 (14) | 0.0634 (16) | 0.0614 (15) | −0.0088 (13) | 0.0187 (12) | −0.0081 (13) |
| C15 | 0.093 (2) | 0.0674 (18) | 0.0687 (18) | −0.0083 (17) | 0.0392 (17) | −0.0007 (15) |
Geometric parameters (Å, °)
| N1—C10 | 1.387 (3) | C9—C7 | 1.342 (3) |
| N1—C1 | 1.400 (3) | C9—H9 | 1.0118 |
| N1—C11 | 1.441 (3) | C3—H3 | 0.9603 |
| C1—C2 | 1.394 (3) | C7—C8 | 1.499 (3) |
| C1—C6 | 1.407 (3) | C8—H8B | 0.9069 |
| C6—C5 | 1.401 (3) | C8—H8C | 1.0133 |
| C6—C7 | 1.445 (3) | C8—H8A | 1.1127 |
| O1—C10 | 1.236 (3) | C16—C15 | 1.391 (4) |
| C2—C3 | 1.373 (3) | C16—H16 | 1.0983 |
| C2—H2 | 1.0382 | C13—C14 | 1.371 (3) |
| C11—C12 | 1.372 (3) | C13—C12 | 1.387 (3) |
| C11—C16 | 1.372 (3) | C13—H13 | 1.0707 |
| C5—C4 | 1.372 (3) | C14—C15 | 1.364 (4) |
| C5—H5 | 0.9818 | C14—H14 | 1.1348 |
| C4—C3 | 1.392 (3) | C12—H12 | 0.8147 |
| C4—H4 | 1.0949 | C15—H15 | 1.0773 |
| C10—C9 | 1.439 (3) | ||
| C10—N1—C1 | 122.73 (19) | C2—C3—C4 | 121.2 (2) |
| C10—N1—C11 | 116.83 (18) | C2—C3—H3 | 120.7 |
| C1—N1—C11 | 120.44 (18) | C4—C3—H3 | 118.0 |
| C2—C1—N1 | 120.7 (2) | C9—C7—C6 | 119.1 (2) |
| C2—C1—C6 | 119.7 (2) | C9—C7—C8 | 120.7 (2) |
| N1—C1—C6 | 119.6 (2) | C6—C7—C8 | 120.2 (2) |
| C5—C6—C1 | 118.4 (2) | C7—C8—H8B | 113.3 |
| C5—C6—C7 | 122.8 (2) | C7—C8—H8C | 116.1 |
| C1—C6—C7 | 118.8 (2) | H8B—C8—H8C | 110.5 |
| C3—C2—C1 | 120.1 (2) | C7—C8—H8A | 111.6 |
| C3—C2—H2 | 121.5 | H8B—C8—H8A | 100.4 |
| C1—C2—H2 | 118.4 | H8C—C8—H8A | 103.3 |
| C12—C11—C16 | 120.0 (2) | C11—C16—C15 | 119.8 (2) |
| C12—C11—N1 | 120.1 (2) | C11—C16—H16 | 115.2 |
| C16—C11—N1 | 119.9 (2) | C15—C16—H16 | 124.9 |
| C4—C5—C6 | 121.8 (2) | C14—C13—C12 | 120.2 (2) |
| C4—C5—H5 | 125.7 | C14—C13—H13 | 120.7 |
| C6—C5—H5 | 112.4 | C12—C13—H13 | 119.0 |
| C5—C4—C3 | 118.8 (2) | C15—C14—C13 | 119.9 (2) |
| C5—C4—H4 | 126.5 | C15—C14—H14 | 121.9 |
| C3—C4—H4 | 114.3 | C13—C14—H14 | 118.2 |
| O1—C10—N1 | 120.5 (2) | C11—C12—C13 | 119.9 (2) |
| O1—C10—C9 | 123.6 (2) | C11—C12—H12 | 114.3 |
| N1—C10—C9 | 116.0 (2) | C13—C12—H12 | 125.4 |
| C7—C9—C10 | 123.7 (2) | C14—C15—C16 | 120.3 (3) |
| C7—C9—H9 | 115.6 | C14—C15—H15 | 121.9 |
| C10—C9—H9 | 120.6 | C16—C15—H15 | 117.8 |
| C10—N1—C1—C2 | 178.9 (2) | C11—N1—C10—C9 | 178.5 (2) |
| C11—N1—C1—C2 | −0.8 (3) | O1—C10—C9—C7 | −179.2 (2) |
| C10—N1—C1—C6 | −1.0 (3) | N1—C10—C9—C7 | 1.6 (4) |
| C11—N1—C1—C6 | 179.3 (2) | C1—C2—C3—C4 | −1.2 (4) |
| C2—C1—C6—C5 | 1.5 (3) | C5—C4—C3—C2 | 1.4 (4) |
| N1—C1—C6—C5 | −178.6 (2) | C10—C9—C7—C6 | 0.5 (4) |
| C2—C1—C6—C7 | −176.9 (2) | C10—C9—C7—C8 | −178.7 (2) |
| N1—C1—C6—C7 | 3.0 (3) | C5—C6—C7—C9 | 178.9 (2) |
| N1—C1—C2—C3 | 179.8 (2) | C1—C6—C7—C9 | −2.8 (3) |
| C6—C1—C2—C3 | −0.3 (3) | C5—C6—C7—C8 | −1.9 (3) |
| C10—N1—C11—C12 | −93.2 (2) | C1—C6—C7—C8 | 176.4 (2) |
| C1—N1—C11—C12 | 86.6 (3) | C12—C11—C16—C15 | 0.5 (4) |
| C10—N1—C11—C16 | 87.5 (3) | N1—C11—C16—C15 | 179.7 (2) |
| C1—N1—C11—C16 | −92.7 (3) | C12—C13—C14—C15 | −0.4 (4) |
| C1—C6—C5—C4 | −1.3 (3) | C16—C11—C12—C13 | 0.4 (4) |
| C7—C6—C5—C4 | 177.0 (2) | N1—C11—C12—C13 | −178.9 (2) |
| C6—C5—C4—C3 | −0.1 (4) | C14—C13—C12—C11 | −0.4 (4) |
| C1—N1—C10—O1 | 179.5 (2) | C13—C14—C15—C16 | 1.3 (4) |
| C11—N1—C10—O1 | −0.7 (3) | C11—C16—C15—C14 | −1.3 (4) |
| C1—N1—C10—C9 | −1.3 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C14—H14···O1i | 1.13 | 2.37 | 3.272 (3) | 135 |
| C4—H4···O1ii | 1.09 | 2.63 | 3.380 (3) | 125 |
| C8—H8A···Cg1iii | 1.11 | 2.73 | 3.382 (4) | 165 |
Symmetry codes: (i) −x+2, y+1/2, −z+3/2; (ii) x−1, y, z; (iii) −x+1, y+1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PR2017).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807061727/pr2017sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536807061727/pr2017Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


