Abstract
The title compound, C8H11N5S, has been prepared by the reaction of 2-acetylpyrazine with 4-methyl-3-thiosemicarbazide. It exists in the thione form and adopts the E configuration. The molecules are connected by the intermolecular N—H⋯N and N—H⋯S interactions.
Related literature
For related literature, see: Hong et al. (2004 ▶); Latheef et al. (2006 ▶); Liberta & West (1992 ▶); Mendes et al. (2001 ▶); Padhye & Kauffman (1985 ▶).
Experimental
Crystal data
C8H11N5S
M r = 209.28
Monoclinic,
a = 9.870 (8) Å
b = 5.976 (5) Å
c = 17.517 (14) Å
β = 91.251 (9)°
V = 1032.8 (14) Å3
Z = 4
Mo Kα radiation
μ = 0.28 mm−1
T = 296 (2) K
0.20 × 0.18 × 0.16 mm
Data collection
Bruker SMART APEX CCD area-detector diffractometer
Absorption correction: none
9944 measured reflections
1919 independent reflections
1595 reflections with I > 2σ(I)
R int = 0.028
Refinement
R[F 2 > 2σ(F 2)] = 0.036
wR(F 2) = 0.100
S = 1.05
1919 reflections
129 parameters
H-atom parameters constrained
Δρmax = 0.22 e Å−3
Δρmin = −0.19 e Å−3
Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a ▶); molecular graphics: SHELXTL (Sheldrick, 1997b ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706285X/at2513sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680706285X/at2513Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1D⋯N4i | 0.86 | 2.42 | 3.137 (3) | 141 |
| N2—H2A⋯S1ii | 0.86 | 2.77 | 3.588 (3) | 161 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
This work was financially supported by the Foundation of the Education Department of Henan Province (No. 2007150012)
supplementary crystallographic information
Comment
Thiosemicarbazone and its derivatives have attracted interest in recent years due to their beneficial biological applications (Padhye & Kauffman, 1985). The presence of alkyl groups at the terminal N(4) position can increase the biological activity (Liberta & West, 1992). So we report here the crystal structure of N(4)-methyl thiosemicarbazones derived from 2-acetylpyrazine.
The geometry of the title compound (I) is well planar (Fig. 1). The molecular exists in the E conformation about the C3—N3 bond as confirmed by the C5—C3—N3—N2 torsion angle of 179.6 °. The C—S bond distance of 1.679 (2) Å, which is much short than C—S single bond (Latheef et al., 2006), shows that the title compound adopts the thione form. The bond length of C3—N3 is 1.283 (2) Å, which is within the range of typical bond length of C?N double bond. The bond length of N2—N3 is 1.368 (2) Å, accepted as typical for a single N—N bond, and in accordance with those of other thiosemicarbazone (Mendes et al., 2001; Hong et al., 2004).
In the crystal packing, the molecules are connected through an extended network of intermolecular hydrogen bonds involving the nitrogen atoms N1, N2, N4 and sulfur atom S1.
Experimental
All reagents were commercially available and of analytical grade. 2-Acetylpyrazine (0.24 g, 2 mmol) and 4-methyl-3-thiosemicarbazide (0.21 g, 2 mmol) were mixed in ethanol (30 ml). Eight drops of acetic acid were added and the solution was refluxed for 4 h. Crystals of (I) suitable for X-ray diffraction analysis were obtained from the filtrate by slow evaporation at room temperature.
Refinement
All H atoms were positioned geometrically and refined as riding with C—H = 0.96 Å (methyl) or 0.93 Å (aromatic), N—H = 0.86 Å and with Uiso(H) = 1.2Ueq(C, N) or 1.5Ueq(C) for methyl groups.
Figures
Fig. 1.
The molecular structure of (I), showing atom displacement ellipsoids drawn at the 50% probability level.
Crystal data
| C8H11N5S | F000 = 440 |
| Mr = 209.28 | Dx = 1.346 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 3140 reflections |
| a = 9.870 (8) Å | θ = 2.3–26.0º |
| b = 5.976 (5) Å | µ = 0.28 mm−1 |
| c = 17.517 (14) Å | T = 296 (2) K |
| β = 91.251 (9)º | Block, colourless |
| V = 1032.8 (14) Å3 | 0.20 × 0.18 × 0.16 mm |
| Z = 4 |
Data collection
| Bruker SMART APEX CCD area-detector diffractometer | 1595 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.028 |
| Monochromator: graphite | θmax = 25.5º |
| T = 296(2) K | θmin = 2.1º |
| 0.3° wide ω scans | h = −11→11 |
| Absorption correction: none | k = −7→7 |
| 9944 measured reflections | l = −21→21 |
| 1919 independent reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.036 | H-atom parameters constrained |
| wR(F2) = 0.100 | w = 1/[σ2(Fo2) + (0.0519P)2 + 0.2669P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.05 | (Δ/σ)max < 0.001 |
| 1919 reflections | Δρmax = 0.22 e Å−3 |
| 129 parameters | Δρmin = −0.19 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.53153 (5) | 0.14546 (9) | 0.39197 (3) | 0.0578 (2) | |
| C1 | 0.3602 (2) | 0.1901 (4) | 0.24436 (12) | 0.0638 (6) | |
| H1A | 0.2945 | 0.1858 | 0.2031 | 0.096* | |
| H1B | 0.4483 | 0.1567 | 0.2252 | 0.096* | |
| H1C | 0.3610 | 0.3365 | 0.2669 | 0.096* | |
| C2 | 0.39403 (17) | −0.0043 (3) | 0.36625 (9) | 0.0403 (4) | |
| C3 | 0.20657 (16) | −0.4638 (3) | 0.43186 (9) | 0.0381 (4) | |
| C4 | 0.27288 (19) | −0.5396 (3) | 0.50496 (10) | 0.0517 (5) | |
| H4A | 0.3690 | −0.5166 | 0.5026 | 0.078* | |
| H4B | 0.2547 | −0.6958 | 0.5125 | 0.078* | |
| H4C | 0.2376 | −0.4552 | 0.5467 | 0.078* | |
| C5 | 0.08835 (16) | −0.5912 (3) | 0.40117 (9) | 0.0373 (4) | |
| C6 | 0.01556 (17) | −0.5220 (3) | 0.33622 (9) | 0.0457 (4) | |
| H6A | 0.0401 | −0.3887 | 0.3129 | 0.055* | |
| C7 | −0.1190 (2) | −0.8254 (3) | 0.34285 (11) | 0.0549 (5) | |
| H7A | −0.1901 | −0.9129 | 0.3240 | 0.066* | |
| C8 | −0.0499 (2) | −0.8930 (4) | 0.40744 (12) | 0.0626 (6) | |
| H8A | −0.0764 | −1.0244 | 0.4313 | 0.075* | |
| N1 | 0.32507 (15) | 0.0258 (3) | 0.30149 (8) | 0.0480 (4) | |
| H1D | 0.2552 | −0.0570 | 0.2928 | 0.058* | |
| N2 | 0.35053 (14) | −0.1701 (2) | 0.41299 (8) | 0.0453 (4) | |
| H2A | 0.3907 | −0.1941 | 0.4563 | 0.054* | |
| N3 | 0.24209 (14) | −0.2982 (2) | 0.39019 (8) | 0.0416 (4) | |
| N4 | −0.08728 (15) | −0.6382 (3) | 0.30628 (9) | 0.0517 (4) | |
| N5 | 0.05389 (16) | −0.7775 (3) | 0.43754 (9) | 0.0536 (4) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0550 (3) | 0.0710 (4) | 0.0472 (3) | −0.0316 (3) | −0.0039 (2) | −0.0010 (2) |
| C1 | 0.0728 (14) | 0.0604 (13) | 0.0579 (12) | −0.0125 (11) | −0.0085 (10) | 0.0176 (10) |
| C2 | 0.0397 (9) | 0.0426 (10) | 0.0385 (9) | −0.0058 (7) | 0.0000 (7) | −0.0041 (7) |
| C3 | 0.0383 (9) | 0.0405 (9) | 0.0352 (8) | −0.0057 (7) | −0.0026 (7) | −0.0030 (7) |
| C4 | 0.0545 (11) | 0.0562 (12) | 0.0439 (10) | −0.0144 (9) | −0.0136 (8) | 0.0051 (9) |
| C5 | 0.0384 (9) | 0.0394 (9) | 0.0339 (8) | −0.0053 (7) | −0.0001 (7) | −0.0016 (7) |
| C6 | 0.0470 (10) | 0.0499 (11) | 0.0397 (9) | −0.0115 (8) | −0.0073 (8) | 0.0044 (8) |
| C7 | 0.0489 (11) | 0.0626 (13) | 0.0532 (11) | −0.0211 (9) | −0.0035 (9) | −0.0084 (10) |
| C8 | 0.0685 (14) | 0.0562 (13) | 0.0627 (13) | −0.0295 (11) | −0.0104 (10) | 0.0107 (10) |
| N1 | 0.0479 (9) | 0.0490 (9) | 0.0466 (9) | −0.0134 (7) | −0.0081 (7) | 0.0070 (7) |
| N2 | 0.0457 (8) | 0.0504 (9) | 0.0393 (8) | −0.0180 (7) | −0.0099 (6) | 0.0051 (7) |
| N3 | 0.0392 (8) | 0.0452 (8) | 0.0402 (8) | −0.0113 (6) | −0.0050 (6) | −0.0007 (6) |
| N4 | 0.0468 (9) | 0.0641 (11) | 0.0435 (8) | −0.0125 (8) | −0.0099 (7) | −0.0018 (8) |
| N5 | 0.0572 (10) | 0.0522 (9) | 0.0509 (9) | −0.0197 (8) | −0.0109 (7) | 0.0117 (8) |
Geometric parameters (Å, °)
| S1—C2 | 1.6789 (19) | C5—N5 | 1.331 (2) |
| C1—N1 | 1.449 (2) | C5—C6 | 1.395 (2) |
| C1—H1A | 0.9600 | C6—N4 | 1.328 (2) |
| C1—H1B | 0.9600 | C6—H6A | 0.9300 |
| C1—H1C | 0.9600 | C7—N4 | 1.330 (3) |
| C2—N1 | 1.322 (2) | C7—C8 | 1.369 (3) |
| C2—N2 | 1.361 (2) | C7—H7A | 0.9300 |
| C3—N3 | 1.283 (2) | C8—N5 | 1.334 (2) |
| C3—C5 | 1.484 (2) | C8—H8A | 0.9300 |
| C3—C4 | 1.496 (2) | N1—H1D | 0.8600 |
| C4—H4A | 0.9600 | N2—N3 | 1.368 (2) |
| C4—H4B | 0.9600 | N2—H2A | 0.8600 |
| C4—H4C | 0.9600 | ||
| N1—C1—H1A | 109.5 | C6—C5—C3 | 122.00 (15) |
| N1—C1—H1B | 109.5 | N4—C6—C5 | 122.84 (17) |
| H1A—C1—H1B | 109.5 | N4—C6—H6A | 118.6 |
| N1—C1—H1C | 109.5 | C5—C6—H6A | 118.6 |
| H1A—C1—H1C | 109.5 | N4—C7—C8 | 121.85 (17) |
| H1B—C1—H1C | 109.5 | N4—C7—H7A | 119.1 |
| N1—C2—N2 | 116.88 (15) | C8—C7—H7A | 119.1 |
| N1—C2—S1 | 123.73 (14) | N5—C8—C7 | 122.59 (18) |
| N2—C2—S1 | 119.38 (13) | N5—C8—H8A | 118.7 |
| N3—C3—C5 | 114.34 (14) | C7—C8—H8A | 118.7 |
| N3—C3—C4 | 126.94 (15) | C2—N1—C1 | 123.93 (16) |
| C5—C3—C4 | 118.71 (15) | C2—N1—H1D | 118.0 |
| C3—C4—H4A | 109.5 | C1—N1—H1D | 118.0 |
| C3—C4—H4B | 109.5 | C2—N2—N3 | 119.13 (14) |
| H4A—C4—H4B | 109.5 | C2—N2—H2A | 120.4 |
| C3—C4—H4C | 109.5 | N3—N2—H2A | 120.4 |
| H4A—C4—H4C | 109.5 | C3—N3—N2 | 119.15 (14) |
| H4B—C4—H4C | 109.5 | C6—N4—C7 | 115.83 (16) |
| N5—C5—C6 | 120.41 (15) | C5—N5—C8 | 116.45 (16) |
| N5—C5—C3 | 117.58 (15) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1D···N4i | 0.86 | 2.42 | 3.137 (3) | 141 |
| N2—H2A···S1ii | 0.86 | 2.77 | 3.588 (3) | 161 |
Symmetry codes: (i) −x, y+1/2, −z+1/2; (ii) −x+1, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: AT2513).
References
- Bruker (2001). SAINT-Plus (Version 6.45) and SMART (Version 5.628). Bruker AXS Inc., Madison, Wisconsin, USA.
- Hong, W. S., Wu, C. Y., Lee, C. S., Hwang, W. S. & Chiang, M. Y. (2004). J. Organomet. Chem.689, 277–285.
- Latheef, L., Manoj, E. & Prathapachandra Kurup, M. R. (2006). Acta Cryst. C62, o16–o18. [DOI] [PubMed]
- Liberta, A. E. & West, D. X. (1992). Biometals, 5, 121–126. [DOI] [PubMed]
- Mendes, I. C., Teixeira, L. R., Lima, R., Beraldo, H., Speziali, N. L. & West, D. X. (2001). J. Mol. Struct.559, 355–360.
- Padhye, S. B. & Kauffman, G. B. (1985). Coord. Chem. Rev.63, 127–160.
- Sheldrick, G. M. (1997a). SHELXS97 and SHELXL97 University of Göttingen, Germany.
- Sheldrick, G. M. (1997b). SHELXTL Bruker AXS Inc., Madison, Wisconsin, USA.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706285X/at2513sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680706285X/at2513Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

