Abstract
In the title compound, C8H7N3O, there are two independent molecules in the asymmetric unit, in which the angles between the pyridine ring and the isoxazole ring are 35.8 (6) and 10.6 (2)°. The crystal packing is stabilized by N—H⋯N hydrogen bonds, which result in the molecules forming a two-dimensional supramolecular layer.
Related literature
The title compound was prepared according to a known procedure (Schmidt et al., 1966 ▶). For hydrogen-bond motif definitions, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C8H7N3O
M r = 161.17
Monoclinic,
a = 14.6411 (13) Å
b = 10.9272 (10) Å
c = 10.0060 (9) Å
β = 106.9870 (10)°
V = 1531.0 (2) Å3
Z = 8
Mo Kα radiation
μ = 0.10 mm−1
T = 187 (2) K
0.42 × 0.18 × 0.10 mm
Data collection
Bruker APEX CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.960, T max = 0.990
8396 measured reflections
3018 independent reflections
2509 reflections with I > 2σ(I)
R int = 0.025
Refinement
R[F 2 > 2σ(F 2)] = 0.043
wR(F 2) = 0.120
S = 1.02
3018 reflections
218 parameters
H-atom parameters constrained
Δρmax = 0.23 e Å−3
Δρmin = −0.23 e Å−3
Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 1997 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706309X/bv2079sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680706309X/bv2079Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H3A⋯N4 | 0.88 | 2.09 | 2.970 (2) | 177 |
| N3—H3B⋯N2i | 0.88 | 2.20 | 3.077 (2) | 169 |
| N6—H6A⋯N1ii | 0.88 | 2.12 | 2.976 (2) | 164 |
| N6—H6B⋯N5iii | 0.88 | 2.09 | 2.970 (2) | 174 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
This work was supported by the National Analytical Research Center of Electrochemistry and Spectroscopy, Changchun Institute of Applied Chemistry, Changchun, China.
supplementary crystallographic information
Comment
The title compound, (I), is an intermediate for our drug development program. Its structure is shown in Fig. 1. The asymmetric unit was formed by two independent molecules, in which the angles between the pyridine ring and the isoxazole ring are 35.8 (6)° and 10.6 (2)° respectively. Four types of N—H···N hydrogen bonds in the structure are present, which generate two rings, R44(18) and R44(28) (Bernstein et al., 1995). These hydrogen bonds extend the monomer into a two-dimensional supramolecular layer (Fig. 2 and Table 1).
Experimental
The title compound was prepared according to a known procedure (Schmidt et al., 1966). Single crystals suitable for X-ray diffraction were obtained by slow evaporation of a ethanol solution at room temperature.
Refinement
H atoms were found on difference Fourier maps and refined as riding, with C—H distance of 0.95 Å and N—H distance of 0.88 Å, and with Uiso(H) = 1.2Ueq(C,N).
Figures
Fig. 1.
A view of (I), with the atom-labeling scheme and 30% probability displacement ellipsoids.
Fig. 2.
View of the three-dimensional supramolecular structure in (I). Dashed lines indicate hydrogen bonds.
Crystal data
| C8H7N3O | F000 = 672 |
| Mr = 161.17 | Dx = 1.398 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 2830 reflections |
| a = 14.6411 (13) Å | θ = 2.4–25.9º |
| b = 10.9272 (10) Å | µ = 0.10 mm−1 |
| c = 10.0060 (9) Å | T = 187 (2) K |
| β = 106.9870 (10)º | Block, colourless |
| V = 1531.0 (2) Å3 | 0.42 × 0.18 × 0.10 mm |
| Z = 8 |
Data collection
| Bruker APEX CCD area-detector diffractometer | 3018 independent reflections |
| Radiation source: fine-focus sealed tube | 2509 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.025 |
| T = 187(2) K | θmax = 26.0º |
| φ and ω scans | θmin = 1.5º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −18→14 |
| Tmin = 0.960, Tmax = 0.990 | k = −10→13 |
| 8396 measured reflections | l = −12→12 |
Refinement
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.07P)2 + 0.2315P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.120 | (Δ/σ)max < 0.001 |
| S = 1.02 | Δρmax = 0.23 e Å−3 |
| 3018 reflections | Δρmin = −0.23 e Å−3 |
| 218 parameters | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0047 (10) |
| Secondary atom site location: difference Fourier map |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.46333 (7) | 0.85688 (9) | 0.20940 (11) | 0.0346 (3) | |
| O2 | 0.00420 (8) | 0.88480 (9) | 0.77638 (11) | 0.0336 (3) | |
| N1 | 0.79693 (9) | 0.83254 (13) | −0.07659 (13) | 0.0383 (3) | |
| N2 | 0.52225 (9) | 0.80823 (11) | 0.13072 (13) | 0.0337 (3) | |
| N3 | 0.44141 (10) | 1.03237 (12) | 0.31848 (14) | 0.0388 (3) | |
| H3A | 0.3946 | 0.9950 | 0.3407 | 0.047* | |
| H3B | 0.4558 | 1.1086 | 0.3447 | 0.047* | |
| N4 | 0.28672 (10) | 0.90935 (13) | 0.40458 (14) | 0.0398 (3) | |
| N5 | 0.06798 (9) | 0.93321 (11) | 0.70626 (14) | 0.0359 (3) | |
| N6 | −0.06051 (10) | 0.70441 (11) | 0.81376 (14) | 0.0377 (3) | |
| H6A | −0.0927 | 0.7458 | 0.8606 | 0.045* | |
| H6B | −0.0675 | 0.6246 | 0.8048 | 0.045* | |
| C1 | 0.72429 (11) | 0.75481 (15) | −0.08875 (15) | 0.0358 (4) | |
| H1 | 0.7222 | 0.6830 | −0.1430 | 0.043* | |
| C2 | 0.65244 (11) | 0.77244 (14) | −0.02749 (15) | 0.0346 (4) | |
| H2 | 0.6026 | 0.7141 | −0.0398 | 0.042* | |
| C3 | 0.65383 (10) | 0.87660 (13) | 0.05244 (14) | 0.0271 (3) | |
| C4 | 0.72841 (11) | 0.95824 (14) | 0.06540 (16) | 0.0368 (4) | |
| H4 | 0.7322 | 1.0310 | 0.1188 | 0.044* | |
| C5 | 0.79718 (12) | 0.93253 (15) | −0.00027 (18) | 0.0419 (4) | |
| H5 | 0.8477 | 0.9896 | 0.0096 | 0.050* | |
| C6 | 0.58040 (10) | 0.89855 (13) | 0.12468 (13) | 0.0270 (3) | |
| C7 | 0.49043 (11) | 0.97363 (13) | 0.24510 (14) | 0.0289 (3) | |
| C8 | 0.56482 (10) | 1.00383 (13) | 0.19470 (14) | 0.0292 (3) | |
| H8 | 0.5984 | 1.0793 | 0.2049 | 0.035* | |
| C9 | 0.29569 (12) | 0.80896 (15) | 0.48351 (17) | 0.0399 (4) | |
| H9 | 0.3461 | 0.7540 | 0.4845 | 0.048* | |
| C10 | 0.23625 (11) | 0.77991 (14) | 0.56385 (16) | 0.0351 (4) | |
| H10 | 0.2452 | 0.7065 | 0.6170 | 0.042* | |
| C11 | 0.16304 (10) | 0.86076 (13) | 0.56504 (14) | 0.0286 (3) | |
| C12 | 0.15291 (11) | 0.96543 (14) | 0.48390 (15) | 0.0331 (4) | |
| H12 | 0.1038 | 1.0227 | 0.4820 | 0.040* | |
| C13 | 0.21520 (12) | 0.98536 (15) | 0.40568 (16) | 0.0379 (4) | |
| H13 | 0.2068 | 1.0570 | 0.3496 | 0.045* | |
| C14 | 0.09696 (10) | 0.83758 (13) | 0.65003 (14) | 0.0272 (3) | |
| C15 | 0.05754 (11) | 0.72799 (13) | 0.67909 (15) | 0.0310 (3) | |
| H15 | 0.0689 | 0.6476 | 0.6514 | 0.037* | |
| C16 | −0.00128 (10) | 0.76260 (13) | 0.75652 (14) | 0.0274 (3) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0346 (6) | 0.0288 (6) | 0.0488 (6) | −0.0019 (4) | 0.0251 (5) | −0.0016 (5) |
| O2 | 0.0403 (6) | 0.0237 (5) | 0.0474 (6) | −0.0025 (4) | 0.0294 (5) | −0.0020 (4) |
| N1 | 0.0352 (7) | 0.0459 (8) | 0.0394 (7) | 0.0043 (6) | 0.0198 (6) | 0.0003 (6) |
| N2 | 0.0330 (7) | 0.0304 (7) | 0.0443 (7) | 0.0000 (5) | 0.0216 (6) | −0.0034 (5) |
| N3 | 0.0443 (8) | 0.0306 (7) | 0.0545 (8) | −0.0018 (6) | 0.0347 (7) | −0.0025 (6) |
| N4 | 0.0369 (8) | 0.0452 (8) | 0.0452 (7) | −0.0045 (6) | 0.0242 (6) | −0.0018 (6) |
| N5 | 0.0415 (8) | 0.0270 (7) | 0.0502 (8) | −0.0038 (6) | 0.0303 (6) | 0.0000 (6) |
| N6 | 0.0488 (8) | 0.0247 (7) | 0.0527 (8) | −0.0031 (6) | 0.0353 (7) | −0.0018 (6) |
| C1 | 0.0382 (9) | 0.0391 (9) | 0.0328 (8) | 0.0022 (7) | 0.0146 (7) | −0.0053 (7) |
| C2 | 0.0331 (8) | 0.0370 (9) | 0.0361 (8) | −0.0039 (7) | 0.0138 (7) | −0.0038 (7) |
| C3 | 0.0270 (7) | 0.0287 (8) | 0.0268 (7) | 0.0030 (6) | 0.0098 (6) | 0.0026 (6) |
| C4 | 0.0364 (9) | 0.0340 (9) | 0.0458 (9) | −0.0031 (7) | 0.0209 (7) | −0.0060 (7) |
| C5 | 0.0382 (9) | 0.0418 (9) | 0.0538 (10) | −0.0065 (7) | 0.0263 (8) | −0.0063 (8) |
| C6 | 0.0251 (7) | 0.0283 (7) | 0.0284 (7) | 0.0005 (6) | 0.0088 (6) | 0.0043 (6) |
| C7 | 0.0321 (8) | 0.0258 (8) | 0.0313 (7) | 0.0020 (6) | 0.0129 (6) | 0.0030 (6) |
| C8 | 0.0308 (8) | 0.0269 (7) | 0.0343 (7) | −0.0030 (6) | 0.0164 (6) | −0.0006 (6) |
| C9 | 0.0351 (9) | 0.0421 (10) | 0.0491 (9) | 0.0051 (7) | 0.0225 (7) | 0.0015 (8) |
| C10 | 0.0353 (8) | 0.0328 (8) | 0.0417 (8) | 0.0037 (7) | 0.0181 (7) | 0.0040 (7) |
| C11 | 0.0270 (7) | 0.0300 (8) | 0.0312 (7) | −0.0035 (6) | 0.0124 (6) | −0.0026 (6) |
| C12 | 0.0336 (8) | 0.0314 (8) | 0.0398 (8) | 0.0011 (6) | 0.0193 (7) | 0.0023 (7) |
| C13 | 0.0431 (9) | 0.0347 (9) | 0.0423 (9) | −0.0030 (7) | 0.0225 (7) | 0.0038 (7) |
| C14 | 0.0266 (7) | 0.0268 (7) | 0.0301 (7) | 0.0015 (6) | 0.0113 (6) | 0.0017 (6) |
| C15 | 0.0387 (8) | 0.0223 (7) | 0.0386 (8) | 0.0016 (6) | 0.0214 (7) | 0.0006 (6) |
| C16 | 0.0309 (7) | 0.0227 (7) | 0.0322 (7) | 0.0010 (6) | 0.0150 (6) | 0.0016 (6) |
Geometric parameters (Å, °)
| O1—C7 | 1.3527 (17) | C3—C4 | 1.386 (2) |
| O1—N2 | 1.4295 (14) | C3—C6 | 1.4798 (18) |
| O2—C16 | 1.3490 (17) | C4—C5 | 1.382 (2) |
| O2—N5 | 1.4237 (14) | C4—H4 | 0.9500 |
| N1—C5 | 1.332 (2) | C5—H5 | 0.9500 |
| N1—C1 | 1.339 (2) | C6—C8 | 1.3999 (19) |
| N2—C6 | 1.3164 (18) | C7—C8 | 1.3677 (19) |
| N3—C7 | 1.3319 (18) | C8—H8 | 0.9500 |
| N3—H3A | 0.8800 | C9—C10 | 1.383 (2) |
| N3—H3B | 0.8800 | C9—H9 | 0.9500 |
| N4—C9 | 1.336 (2) | C10—C11 | 1.392 (2) |
| N4—C13 | 1.339 (2) | C10—H10 | 0.9500 |
| N5—C14 | 1.3145 (17) | C11—C12 | 1.385 (2) |
| N6—C16 | 1.3322 (18) | C11—C14 | 1.4847 (18) |
| N6—H6A | 0.8800 | C12—C13 | 1.3816 (19) |
| N6—H6B | 0.8800 | C12—H12 | 0.9500 |
| C1—C2 | 1.377 (2) | C13—H13 | 0.9500 |
| C1—H1 | 0.9500 | C14—C15 | 1.3963 (19) |
| C2—C3 | 1.388 (2) | C15—C16 | 1.3692 (19) |
| C2—H2 | 0.9500 | C15—H15 | 0.9500 |
| C7—O1—N2 | 108.58 (10) | N3—C7—O1 | 115.87 (13) |
| C16—O2—N5 | 108.34 (10) | N3—C7—C8 | 134.62 (14) |
| C5—N1—C1 | 116.20 (13) | O1—C7—C8 | 109.51 (12) |
| C6—N2—O1 | 104.42 (11) | C7—C8—C6 | 104.48 (12) |
| C7—N3—H3A | 120.0 | C7—C8—H8 | 127.8 |
| C7—N3—H3B | 120.0 | C6—C8—H8 | 127.8 |
| H3A—N3—H3B | 120.0 | N4—C9—C10 | 124.22 (15) |
| C9—N4—C13 | 116.52 (13) | N4—C9—H9 | 117.9 |
| C14—N5—O2 | 104.82 (10) | C10—C9—H9 | 117.9 |
| C16—N6—H6A | 120.0 | C9—C10—C11 | 118.44 (14) |
| C16—N6—H6B | 120.0 | C9—C10—H10 | 120.8 |
| H6A—N6—H6B | 120.0 | C11—C10—H10 | 120.8 |
| N1—C1—C2 | 124.11 (14) | C12—C11—C10 | 118.03 (13) |
| N1—C1—H1 | 117.9 | C12—C11—C14 | 120.03 (13) |
| C2—C1—H1 | 117.9 | C10—C11—C14 | 121.94 (13) |
| C1—C2—C3 | 119.13 (14) | C13—C12—C11 | 119.13 (14) |
| C1—C2—H2 | 120.4 | C13—C12—H12 | 120.4 |
| C3—C2—H2 | 120.4 | C11—C12—H12 | 120.4 |
| C4—C3—C2 | 117.40 (13) | N4—C13—C12 | 123.65 (15) |
| C4—C3—C6 | 120.98 (13) | N4—C13—H13 | 118.2 |
| C2—C3—C6 | 121.60 (13) | C12—C13—H13 | 118.2 |
| C5—C4—C3 | 119.20 (14) | N5—C14—C15 | 112.83 (12) |
| C5—C4—H4 | 120.4 | N5—C14—C11 | 117.08 (12) |
| C3—C4—H4 | 120.4 | C15—C14—C11 | 130.08 (12) |
| N1—C5—C4 | 123.96 (15) | C16—C15—C14 | 104.33 (12) |
| N1—C5—H5 | 118.0 | C16—C15—H15 | 127.8 |
| C4—C5—H5 | 118.0 | C14—C15—H15 | 127.8 |
| N2—C6—C8 | 113.02 (12) | N6—C16—O2 | 115.30 (12) |
| N2—C6—C3 | 118.22 (13) | N6—C16—C15 | 135.03 (14) |
| C8—C6—C3 | 128.72 (13) | O2—C16—C15 | 109.67 (12) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3A···N4 | 0.88 | 2.09 | 2.970 (2) | 177 |
| N3—H3B···N2i | 0.88 | 2.20 | 3.077 (2) | 169 |
| N6—H6A···N1ii | 0.88 | 2.12 | 2.976 (2) | 164 |
| N6—H6B···N5iii | 0.88 | 2.09 | 2.970 (2) | 174 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x−1, y, z+1; (iii) −x, y−1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BV2079).
References
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl.34, 1555–1573.
- Bruker (1997). SHELXTL Version 5.1. Bruker AXS Inc., Madison, Wisconsion, USA.
- Bruker (1998). SMART Version 5.0. Bruker AXS Inc., Madison, Wisconsion, USA.
- Bruker (2003). SAINT Version 6. Bruker AXS, Inc., Madison, Wisconsion, USA.
- Schmidt, P., Eichenberger, K. & Wilhelm, M. (1966). US Patent 3 277 105.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (1997). SHELXS97 and SHELXL97 University of Göttingen, Germany.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706309X/bv2079sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680706309X/bv2079Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


