Abstract
The title compound, C17H12ClN3O2, was synthesized by the Schiff base condensation reaction of 2-hydroxy-1-naphthaldehyde with 6-chloronicotinic acid hydrazide in a methanol solution. The molecule displays a trans configuration with respect to the C=N and C—N bonds. The dihedral angle between the naphthyl ring system and the pyridine ring is 7.6 (4)°. There is an intramolecular O—H⋯N hydrogen bond. The crystal structure is stabilized by intermolecular N—H⋯O and C—H⋯O hydrogen bonds, forming chains running along the b axis.
Related literature
For related literature, see: Allen et al. (1987 ▶); Chen et al. (1997 ▶); Fan et al. (2007 ▶); Kim et al. (2005 ▶); Nimitsiriwat et al. (2004 ▶); Ren et al. (2002 ▶).
Experimental
Crystal data
C17H12ClN3O2
M r = 325.75
Monoclinic,
a = 4.7450 (9) Å
b = 6.0420 (12) Å
c = 25.752 (5) Å
β = 91.93 (3)°
V = 737.9 (2) Å3
Z = 2
Mo Kα radiation
μ = 0.27 mm−1
T = 293 (2) K
0.23 × 0.20 × 0.20 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.937, T max = 0.940
5692 measured reflections
2980 independent reflections
1948 reflections with I > 2σ(I)
R int = 0.043
Refinement
R[F 2 > 2σ(F 2)] = 0.057
wR(F 2) = 0.110
S = 0.99
2980 reflections
212 parameters
3 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.15 e Å−3
Δρmin = −0.18 e Å−3
Absolute structure: Flack (1983 ▶), 1447 Friedel pairs
Flack parameter: 0.11 (10)
Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a ▶); molecular graphics: SHELXTL (Sheldrick, 1997b ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807063611/bv2083sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063611/bv2083Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O2—H2⋯N3 | 0.82 | 1.84 | 2.559 (4) | 146 |
| N2—H2B⋯O1i | 0.900 (10) | 2.05 (2) | 2.862 (4) | 150 (4) |
| C2—H2A⋯O1ii | 0.93 | 2.50 | 3.396 (4) | 161 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
Financial support from the Third Affiliated Hospital of Suzhou University is acknowledged.
supplementary crystallographic information
Comment
Schiff base compounds have been widely investigated over a century (Fan et al., 2007; Kim et al., 2005; Nimitsiriwat et al., 2004). Some of the compounds have been found to have pharmacological and antibacterial activity (Chen et al., 1997; Ren et al., 2002). In this paper, the crystal structure of a new Schiff base compound derived from the condensation reaction of 2-hydroxy-1-naphthaldehyde with 6-chloronicotinic acid hydrazide is reported.
The Schiff base molecule of the compound displays a trans configuration with respect to the C?N and C—N bonds (Fig. 1). The dihedral angle between the C8—C17 naphthyl ring and the C1—C5/N1 pyridine ring is 7.6 (4)°. All the bond lengths are within normal ranges (Allen et al., 1987). There is an intramolecular O–H···N hydrogen bond in the molecule (Table 1). The crystal structure is stabilized by intermolecular N–H···O and C–H···O hydrogen bonds (Table 1), forming chains running along the b axis (Fig. 2).
Experimental
2-Hydroxy-1-naphthaldehyde (0.1 mmol, 17.2 mg) and 6-chloronicotinic acid hydrazide (0.1 mmol, 17.1 mg) were dissolved in a methanol solution (10 ml). The mixture was stirred at room temperature to give a clear yellow solution. Crystals of the title compound were formed by gradual evaporation of the solvent for two days at room temperature.
Refinement
Atom H2B was located from a difference Fourier map and refined isotropically, with N–H distance restrained to 0.90 (1) Å. Other H atoms were constrained to ideal geometries, with C–H = 0.93 Å, O–H = 0.82 Å, and with Uiso(H) set to 1.2Ueq(C) and 1.5Ueq(O).
Figures
Fig. 1.
The structure of (I) at the 30% probability level.
Fig. 2.
Molecular packing of (I), viewed along the a axis. Intermolecular hydrogen bonds are shown as dashed lines.
Crystal data
| C17H12ClN3O2 | F000 = 336 |
| Mr = 325.75 | Dx = 1.466 Mg m−3 |
| Monoclinic, Pc | Mo Kα radiation λ = 0.71073 Å |
| a = 4.7450 (9) Å | Cell parameters from 790 reflections |
| b = 6.0420 (12) Å | θ = 2.4–24.3º |
| c = 25.752 (5) Å | µ = 0.27 mm−1 |
| β = 91.93 (3)º | T = 293 (2) K |
| V = 737.9 (2) Å3 | Block, yellow |
| Z = 2 | 0.23 × 0.20 × 0.20 mm |
Data collection
| Bruker SMART CCD area-detector diffractometer | 2980 independent reflections |
| Radiation source: fine-focus sealed tube | 1948 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.043 |
| T = 293(2) K | θmax = 26.5º |
| ω scan | θmin = 1.6º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −5→5 |
| Tmin = 0.937, Tmax = 0.940 | k = −7→7 |
| 5692 measured reflections | l = −32→32 |
Refinement
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.057 | w = 1/[σ2(Fo2) + (0.0375P)2] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.110 | (Δ/σ)max < 0.001 |
| S = 0.99 | Δρmax = 0.15 e Å−3 |
| 2980 reflections | Δρmin = −0.18 e Å−3 |
| 212 parameters | Extinction correction: none |
| 3 restraints | Absolute structure: Flack (1983), 1447 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.11 (10) |
| Secondary atom site location: difference Fourier map |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.0611 (3) | 1.5001 (2) | −0.11216 (6) | 0.0788 (4) | |
| O1 | −0.4774 (5) | 0.7030 (4) | 0.02688 (11) | 0.0494 (7) | |
| O2 | −0.3951 (6) | 0.1598 (5) | 0.10628 (11) | 0.0515 (7) | |
| H2 | −0.3567 | 0.2788 | 0.0929 | 0.077* | |
| N1 | −0.2165 (8) | 1.1504 (6) | −0.08492 (13) | 0.0577 (10) | |
| N2 | −0.0394 (6) | 0.6927 (6) | 0.06381 (12) | 0.0380 (8) | |
| N3 | −0.1179 (6) | 0.5186 (5) | 0.09455 (13) | 0.0416 (8) | |
| C1 | −0.0145 (9) | 1.2884 (7) | −0.06934 (16) | 0.0484 (11) | |
| C2 | 0.1344 (8) | 1.2758 (6) | −0.02279 (15) | 0.0472 (10) | |
| H2A | 0.2741 | 1.3785 | −0.0141 | 0.057* | |
| C3 | 0.0704 (8) | 1.1058 (6) | 0.01076 (16) | 0.0390 (9) | |
| H3 | 0.1677 | 1.0913 | 0.0425 | 0.047* | |
| C4 | −0.1420 (8) | 0.9566 (6) | −0.00370 (16) | 0.0375 (10) | |
| C5 | −0.2731 (9) | 0.9895 (7) | −0.05108 (17) | 0.0525 (12) | |
| H5 | −0.4155 | 0.8905 | −0.0608 | 0.063* | |
| C6 | −0.2328 (8) | 0.7734 (6) | 0.02998 (14) | 0.0367 (9) | |
| C7 | 0.0501 (10) | 0.4617 (6) | 0.13256 (18) | 0.0401 (9) | |
| H7 | 0.2148 | 0.5417 | 0.1391 | 0.048* | |
| C8 | −0.0149 (7) | 0.2745 (6) | 0.16510 (15) | 0.0376 (9) | |
| C9 | −0.2276 (8) | 0.1283 (7) | 0.14941 (16) | 0.0432 (10) | |
| C10 | −0.2774 (9) | −0.0650 (7) | 0.17726 (19) | 0.0555 (13) | |
| H10 | −0.4147 | −0.1643 | 0.1654 | 0.067* | |
| C11 | −0.1272 (9) | −0.1079 (7) | 0.22124 (18) | 0.0569 (13) | |
| H11 | −0.1638 | −0.2377 | 0.2392 | 0.068* | |
| C12 | 0.0845 (9) | 0.0363 (7) | 0.24135 (17) | 0.0485 (12) | |
| C13 | 0.2286 (11) | −0.0050 (10) | 0.28798 (17) | 0.0631 (15) | |
| H13 | 0.1877 | −0.1323 | 0.3066 | 0.076* | |
| C14 | 0.4314 (10) | 0.1389 (9) | 0.30741 (18) | 0.0651 (14) | |
| H14 | 0.5319 | 0.1062 | 0.3381 | 0.078* | |
| C15 | 0.4840 (9) | 0.3345 (8) | 0.28043 (16) | 0.0596 (13) | |
| H15 | 0.6164 | 0.4348 | 0.2938 | 0.072* | |
| C16 | 0.3413 (8) | 0.3798 (7) | 0.23432 (15) | 0.0460 (10) | |
| H16 | 0.3789 | 0.5106 | 0.2168 | 0.055* | |
| C17 | 0.1391 (8) | 0.2315 (7) | 0.21308 (15) | 0.0384 (10) | |
| H2B | 0.142 (3) | 0.733 (7) | 0.0613 (17) | 0.080* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.1123 (10) | 0.0589 (7) | 0.0659 (7) | −0.0054 (7) | 0.0137 (6) | 0.0212 (6) |
| O1 | 0.0287 (14) | 0.0529 (18) | 0.0662 (19) | −0.0089 (14) | −0.0033 (13) | 0.0008 (15) |
| O2 | 0.0416 (15) | 0.057 (2) | 0.0557 (18) | −0.0132 (14) | 0.0021 (14) | −0.0051 (15) |
| N1 | 0.073 (3) | 0.055 (3) | 0.044 (2) | −0.001 (2) | −0.005 (2) | 0.0076 (19) |
| N2 | 0.0300 (17) | 0.0427 (19) | 0.0414 (18) | −0.0028 (15) | 0.0004 (16) | 0.0072 (16) |
| N3 | 0.040 (2) | 0.041 (2) | 0.0444 (19) | −0.0037 (17) | 0.0083 (16) | 0.0022 (17) |
| C1 | 0.059 (3) | 0.043 (3) | 0.044 (3) | −0.002 (2) | 0.010 (2) | 0.005 (2) |
| C2 | 0.046 (2) | 0.042 (3) | 0.053 (3) | −0.006 (2) | 0.004 (2) | −0.005 (2) |
| C3 | 0.037 (2) | 0.040 (2) | 0.040 (2) | −0.004 (2) | −0.0024 (18) | 0.000 (2) |
| C4 | 0.036 (2) | 0.041 (3) | 0.036 (2) | 0.0013 (19) | 0.0026 (18) | −0.0020 (19) |
| C5 | 0.048 (3) | 0.053 (3) | 0.056 (3) | −0.007 (2) | −0.001 (2) | −0.011 (2) |
| C6 | 0.033 (2) | 0.039 (2) | 0.038 (2) | −0.0016 (19) | 0.0035 (18) | −0.0067 (18) |
| C7 | 0.035 (2) | 0.041 (2) | 0.045 (2) | 0.000 (2) | 0.0052 (17) | 0.003 (2) |
| C8 | 0.033 (2) | 0.035 (2) | 0.045 (2) | −0.0019 (18) | 0.0092 (18) | −0.0023 (18) |
| C9 | 0.038 (2) | 0.045 (3) | 0.047 (3) | 0.002 (2) | 0.006 (2) | −0.002 (2) |
| C10 | 0.055 (3) | 0.042 (3) | 0.071 (3) | −0.014 (2) | 0.019 (3) | −0.010 (3) |
| C11 | 0.063 (3) | 0.041 (3) | 0.068 (3) | −0.007 (2) | 0.016 (3) | 0.007 (2) |
| C12 | 0.056 (3) | 0.037 (3) | 0.053 (3) | 0.007 (2) | 0.016 (2) | 0.006 (2) |
| C13 | 0.076 (4) | 0.071 (4) | 0.043 (3) | 0.016 (3) | 0.014 (3) | 0.022 (3) |
| C14 | 0.068 (3) | 0.088 (4) | 0.040 (3) | 0.028 (3) | 0.006 (2) | 0.010 (3) |
| C15 | 0.066 (3) | 0.065 (3) | 0.047 (3) | 0.005 (3) | −0.002 (2) | 0.002 (2) |
| C16 | 0.043 (3) | 0.046 (3) | 0.049 (3) | −0.003 (2) | 0.002 (2) | 0.003 (2) |
| C17 | 0.038 (2) | 0.039 (3) | 0.038 (2) | 0.0033 (19) | 0.0086 (19) | −0.0006 (19) |
Geometric parameters (Å, °)
| Cl1—C1 | 1.734 (4) | C7—H7 | 0.9300 |
| O1—C6 | 1.236 (4) | C8—C9 | 1.391 (5) |
| O2—C9 | 1.357 (4) | C8—C17 | 1.438 (5) |
| O2—H2 | 0.8200 | C9—C10 | 1.395 (6) |
| N1—C1 | 1.323 (5) | C10—C11 | 1.343 (6) |
| N1—C5 | 1.339 (5) | C10—H10 | 0.9300 |
| N2—C6 | 1.336 (4) | C11—C12 | 1.415 (6) |
| N2—N3 | 1.375 (4) | C11—H11 | 0.9300 |
| N2—H2B | 0.900 (10) | C12—C13 | 1.385 (6) |
| N3—C7 | 1.288 (5) | C12—C17 | 1.414 (5) |
| C1—C2 | 1.373 (5) | C13—C14 | 1.378 (7) |
| C2—C3 | 1.382 (5) | C13—H13 | 0.9300 |
| C2—H2A | 0.9300 | C14—C15 | 1.398 (6) |
| C3—C4 | 1.393 (5) | C14—H14 | 0.9300 |
| C3—H3 | 0.9300 | C15—C16 | 1.374 (5) |
| C4—C5 | 1.365 (5) | C15—H15 | 0.9300 |
| C4—C6 | 1.479 (5) | C16—C17 | 1.410 (5) |
| C5—H5 | 0.9300 | C16—H16 | 0.9300 |
| C7—C8 | 1.447 (5) | ||
| C9—O2—H2 | 109.5 | C17—C8—C7 | 121.8 (4) |
| C1—N1—C5 | 114.8 (4) | O2—C9—C8 | 123.2 (4) |
| C6—N2—N3 | 117.5 (3) | O2—C9—C10 | 115.7 (4) |
| C6—N2—H2B | 120 (3) | C8—C9—C10 | 121.1 (4) |
| N3—N2—H2B | 122 (3) | C11—C10—C9 | 120.1 (4) |
| C7—N3—N2 | 118.0 (3) | C11—C10—H10 | 120.0 |
| N1—C1—C2 | 125.2 (4) | C9—C10—H10 | 120.0 |
| N1—C1—Cl1 | 115.8 (3) | C10—C11—C12 | 122.7 (4) |
| C2—C1—Cl1 | 119.0 (3) | C10—C11—H11 | 118.7 |
| C1—C2—C3 | 118.0 (4) | C12—C11—H11 | 118.7 |
| C1—C2—H2A | 121.0 | C13—C12—C17 | 120.2 (4) |
| C3—C2—H2A | 121.0 | C13—C12—C11 | 122.0 (4) |
| C2—C3—C4 | 119.0 (4) | C17—C12—C11 | 117.7 (4) |
| C2—C3—H3 | 120.5 | C14—C13—C12 | 121.3 (5) |
| C4—C3—H3 | 120.5 | C14—C13—H13 | 119.3 |
| C5—C4—C3 | 116.7 (4) | C12—C13—H13 | 119.3 |
| C5—C4—C6 | 120.0 (4) | C13—C14—C15 | 119.1 (5) |
| C3—C4—C6 | 123.3 (4) | C13—C14—H14 | 120.4 |
| N1—C5—C4 | 126.3 (4) | C15—C14—H14 | 120.4 |
| N1—C5—H5 | 116.9 | C16—C15—C14 | 120.4 (5) |
| C4—C5—H5 | 116.9 | C16—C15—H15 | 119.8 |
| O1—C6—N2 | 122.6 (3) | C14—C15—H15 | 119.8 |
| O1—C6—C4 | 120.7 (4) | C15—C16—C17 | 121.2 (4) |
| N2—C6—C4 | 116.6 (3) | C15—C16—H16 | 119.4 |
| N3—C7—C8 | 120.7 (4) | C17—C16—H16 | 119.4 |
| N3—C7—H7 | 119.7 | C16—C17—C12 | 117.7 (4) |
| C8—C7—H7 | 119.7 | C16—C17—C8 | 122.6 (3) |
| C9—C8—C17 | 118.5 (3) | C12—C17—C8 | 119.8 (4) |
| C9—C8—C7 | 119.6 (4) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O2—H2···N3 | 0.82 | 1.84 | 2.559 (4) | 146 |
| N2—H2B···O1i | 0.900 (10) | 2.05 (2) | 2.862 (4) | 150 (4) |
| C2—H2A···O1ii | 0.93 | 2.50 | 3.396 (4) | 161 |
Symmetry codes: (i) x+1, y, z; (ii) x+1, y+1, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BV2083).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807063611/bv2083sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063611/bv2083Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


