Abstract
The title molecule, C13H11NO, is almost flat, the angle between the pyrrole and the phenyl rings being 10.9 (1)°. The atoms of the central C3O unit are coplanar, with a mean deviation from the plane of 0.001 (1) Å. The angles between this plane and the pyrrole and phenyl rings are 3.3 (1) and 8.0 (1)°, respectively. The molecules form centrosymmetric dimers through a pair of N—H⋯O hydrogen bonds with an R 2 2(10) motif.
Related literature
For details of the biological and the pharmaceutical properties of chalcones, see: Chen et al. (1999 ▶); Dimmock et al. (1999 ▶); Go et al. (2005 ▶); Lin et al. (2002 ▶); Lunardi et al. (2003 ▶); Opletalova (2000 ▶). For other related literature, see: Gong & Shen (2007 ▶); Kumaran et al. (1996 ▶); Shanmuga Sundara Raj et al. (1997 ▶, 1998 ▶). For a description of hydrogen-bond motifs, see: Etter et al. (1990 ▶).
Experimental
Crystal data
C13H11NO
M r = 197.23
Monoclinic,
a = 19.848 (4) Å
b = 5.6435 (12) Å
c = 19.325 (4) Å
β = 101.535 (4)°
V = 2120.9 (8) Å3
Z = 8
Mo Kα radiation
μ = 0.08 mm−1
T = 293 (2) K
0.34 × 0.13 × 0.11 mm
Data collection
Bruker APEX area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.974, T max = 0.991
5274 measured reflections
2069 independent reflections
1164 reflections with I > 2σ(I)
R int = 0.040
Refinement
R[F 2 > 2σ(F 2)] = 0.054
wR(F 2) = 0.137
S = 1.00
2069 reflections
136 parameters
H-atom parameters constrained
Δρmax = 0.13 e Å−3
Δρmin = −0.13 e Å−3
Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1990 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 2002 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807063489/fb2072sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063489/fb2072Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O1i | 0.86 | 2.02 | 2.817 (2) | 155 |
| C7—H7⋯O1 | 0.93 | 2.51 | 2.835 (3) | 101 |
Symmetry code: (i)
.
Acknowledgments
The authors thank Jiangxi Science and Technology Normal University for the support of this study.
supplementary crystallographic information
Comment
Chalcone derivatives possess wide variety of pharmaceutical properties, such as anticancer, antibacterial, antiviral, antiprotozoal, insecticidal and enzyme-inhibitory ones (Dimmock et al., 1999; Go et al., 2005; Opletalova, 2000). Some of the substituted chalcones are also reported to possess antileishmanial (Chen et al., 1999), antitubercular (Lin et al., 2002), trypanocidal (Lunardi et al., 2003) activities. As a part of our ongoing efforts in the chalcone compounds (Gong & Shen, 2007), the title compound is reported here for the first time.
In the title compound, C13H11NO, the bond lengths and angles are usual. The –NH groups are involved as donors to form centrosymmetric dimers with a motif R22(10) through N—H···O hydrogen bonds (Etter et al., 1990) - (Fig. 2). There is a pyrrole-H···π-phenyl-ring interaction as indicate the geometric parameters C2—H2···Centroid(phenyl) (1 - x, y, 3/2 - z) where the distance H···centroid and C2···centroid equal to 2.90 and 3.666 (3) Å, respectively, and the angle C2—H2···Centroid(phenyl) equals to 141° (Spek, 2003).
Experimental
2-Acetylpyrrole (2.18 g, 20.0 mmol) was added to a solution of benzaldehyde (1.06 g, 10.0 mmol) in methanol (65 ml). Then potassium hydroxide (1.12 g, 20 mmol) and ammonia (25%, 50 ml) were added to the solution and refluxed for 12 h. The resulting solution was cooled and the solvent was evaporated under vacuum to give an orange precipitate which was separated by filtration, washed with iced ethanol (95%) and water to pH = 7. Recrystallization from dichloromethane gave light yellow prism-like crystals with average size of about 1.50x0.35x0.25 mm. Yield: 0.89 g (45%).
Refinement
All the H atoms could be distinguished in the difference Fourier map. Nevertheless, the H atoms were set into idealized positions and constrained by the riding motion formalism: The C—H and N—H distances were set to 0.93 and 0.86 Å, respectively, while Uiso=1.2Ueq of the pertinent carrier atom.
Figures
Fig. 1.
The title molecule with the displacement ellipsoids shown at the 30% probability level, and with the H atoms shown as spheres of arbitrary radii.
Fig. 2.
A motif showing the N—H···.O hydrogen bonds. The H atoms not involved in hydrogen bonding have been omitted for clarity.
Crystal data
| C13H11NO | F000 = 832 |
| Mr = 197.23 | Dx = 1.235 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: -C 2yc | Cell parameters from 642 reflections |
| a = 19.848 (4) Å | θ = 2.7–24.7º |
| b = 5.6435 (12) Å | µ = 0.08 mm−1 |
| c = 19.325 (4) Å | T = 293 (2) K |
| β = 101.535 (4)º | Prism, light yellow |
| V = 2120.9 (8) Å3 | 0.34 × 0.13 × 0.11 mm |
| Z = 8 |
Data collection
| Bruker APEX area-detector diffractometer | 2069 independent reflections |
| Radiation source: fine-focus sealed tube | 1164 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.040 |
| T = 293(2) K | θmax = 26.0º |
| φ and ω scans | θmin = 2.1º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −24→23 |
| Tmin = 0.974, Tmax = 0.991 | k = −6→6 |
| 5274 measured reflections | l = −14→23 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.054 | H-atom parameters constrained |
| wR(F2) = 0.137 | w = 1/[σ2(Fo2) + (0.0534P)2 + 0.0616P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.00 | (Δ/σ)max < 0.001 |
| 2069 reflections | Δρmax = 0.13 e Å−3 |
| 136 parameters | Δρmin = −0.13 e Å−3 |
| 44 constraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.54821 (8) | 0.1673 (3) | 0.58099 (8) | 0.0776 (5) | |
| N1 | 0.41400 (9) | 0.2050 (3) | 0.50060 (9) | 0.0635 (5) | |
| H1 | 0.4349 | 0.0847 | 0.4874 | 0.076* | |
| C1 | 0.44232 (11) | 0.3625 (4) | 0.55205 (10) | 0.0547 (6) | |
| C2 | 0.39177 (12) | 0.5253 (4) | 0.55675 (12) | 0.0673 (7) | |
| H2 | 0.3961 | 0.6536 | 0.5875 | 0.081* | |
| C3 | 0.33346 (12) | 0.4656 (4) | 0.50787 (13) | 0.0762 (7) | |
| H3 | 0.2916 | 0.5456 | 0.4997 | 0.091* | |
| C4 | 0.34890 (12) | 0.2665 (4) | 0.47383 (12) | 0.0724 (7) | |
| H4 | 0.3191 | 0.1871 | 0.4380 | 0.087* | |
| C5 | 0.51165 (12) | 0.3362 (4) | 0.59096 (11) | 0.0586 (6) | |
| C6 | 0.53729 (12) | 0.5178 (4) | 0.64459 (11) | 0.0640 (6) | |
| H6 | 0.5083 | 0.6427 | 0.6503 | 0.077* | |
| C7 | 0.59949 (12) | 0.5118 (4) | 0.68497 (11) | 0.0609 (6) | |
| H7 | 0.6274 | 0.3860 | 0.6775 | 0.073* | |
| C8 | 0.62940 (11) | 0.6813 (4) | 0.74025 (10) | 0.0564 (6) | |
| C9 | 0.69227 (11) | 0.6324 (4) | 0.78395 (11) | 0.0645 (6) | |
| H9 | 0.7159 | 0.4953 | 0.7767 | 0.077* | |
| C10 | 0.72018 (13) | 0.7842 (5) | 0.83802 (13) | 0.0733 (7) | |
| H10 | 0.7622 | 0.7486 | 0.8671 | 0.088* | |
| C11 | 0.68593 (15) | 0.9879 (5) | 0.84886 (13) | 0.0780 (8) | |
| H11 | 0.7046 | 1.0898 | 0.8855 | 0.094* | |
| C12 | 0.62420 (14) | 1.0411 (4) | 0.80554 (13) | 0.0782 (7) | |
| H12 | 0.6011 | 1.1794 | 0.8128 | 0.094* | |
| C13 | 0.59620 (13) | 0.8898 (4) | 0.75115 (12) | 0.0699 (7) | |
| H13 | 0.5547 | 0.9283 | 0.7216 | 0.084* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0839 (12) | 0.0726 (11) | 0.0687 (11) | 0.0236 (9) | −0.0030 (8) | −0.0209 (8) |
| N1 | 0.0670 (12) | 0.0654 (12) | 0.0563 (11) | 0.0096 (10) | 0.0076 (9) | −0.0115 (10) |
| C1 | 0.0643 (14) | 0.0543 (14) | 0.0453 (12) | 0.0030 (11) | 0.0102 (11) | −0.0051 (11) |
| C2 | 0.0730 (15) | 0.0639 (16) | 0.0651 (15) | 0.0084 (13) | 0.0138 (13) | −0.0107 (12) |
| C3 | 0.0672 (15) | 0.0833 (18) | 0.0767 (17) | 0.0166 (14) | 0.0114 (14) | −0.0072 (14) |
| C4 | 0.0619 (15) | 0.0858 (18) | 0.0661 (15) | 0.0029 (14) | 0.0051 (12) | −0.0102 (14) |
| C5 | 0.0749 (16) | 0.0527 (14) | 0.0486 (13) | 0.0075 (12) | 0.0134 (11) | −0.0024 (11) |
| C6 | 0.0732 (15) | 0.0575 (15) | 0.0609 (14) | 0.0051 (12) | 0.0123 (12) | −0.0109 (11) |
| C7 | 0.0684 (14) | 0.0583 (15) | 0.0579 (14) | 0.0009 (12) | 0.0174 (12) | −0.0049 (11) |
| C8 | 0.0646 (14) | 0.0539 (14) | 0.0521 (13) | −0.0081 (12) | 0.0154 (11) | −0.0037 (11) |
| C9 | 0.0660 (15) | 0.0655 (15) | 0.0631 (15) | −0.0076 (12) | 0.0157 (12) | −0.0018 (12) |
| C10 | 0.0717 (16) | 0.0802 (18) | 0.0669 (16) | −0.0221 (15) | 0.0110 (12) | −0.0012 (14) |
| C11 | 0.104 (2) | 0.0711 (19) | 0.0591 (15) | −0.0342 (16) | 0.0157 (15) | −0.0060 (13) |
| C12 | 0.108 (2) | 0.0550 (15) | 0.0728 (18) | −0.0107 (15) | 0.0210 (16) | −0.0106 (13) |
| C13 | 0.0828 (16) | 0.0579 (14) | 0.0672 (16) | −0.0021 (13) | 0.0105 (13) | −0.0049 (12) |
Geometric parameters (Å, °)
| O1—C5 | 1.236 (2) | C7—C8 | 1.468 (3) |
| N1—C4 | 1.338 (3) | C7—H7 | 0.9300 |
| N1—C1 | 1.368 (2) | C8—C13 | 1.385 (3) |
| N1—H1 | 0.8600 | C8—C9 | 1.387 (3) |
| C1—C2 | 1.377 (3) | C9—C10 | 1.379 (3) |
| C1—C5 | 1.438 (3) | C9—H9 | 0.9300 |
| C2—C3 | 1.381 (3) | C10—C11 | 1.373 (3) |
| C2—H2 | 0.9300 | C10—H10 | 0.9300 |
| C3—C4 | 1.367 (3) | C11—C12 | 1.372 (3) |
| C3—H3 | 0.9300 | C11—H11 | 0.9300 |
| C4—H4 | 0.9300 | C12—C13 | 1.382 (3) |
| C5—C6 | 1.474 (3) | C12—H12 | 0.9300 |
| C6—C7 | 1.322 (3) | C13—H13 | 0.9300 |
| C6—H6 | 0.9300 | ||
| C4—N1—C1 | 109.70 (18) | C6—C7—C8 | 127.4 (2) |
| C4—N1—H1 | 125.2 | C6—C7—H7 | 116.3 |
| C1—N1—H1 | 125.2 | C8—C7—H7 | 116.3 |
| N1—C1—C2 | 106.42 (18) | C13—C8—C9 | 118.3 (2) |
| N1—C1—C5 | 121.59 (19) | C13—C8—C7 | 121.9 (2) |
| C2—C1—C5 | 132.0 (2) | C9—C8—C7 | 119.8 (2) |
| C1—C2—C3 | 108.3 (2) | C10—C9—C8 | 120.9 (2) |
| C1—C2—H2 | 125.8 | C10—C9—H9 | 119.5 |
| C3—C2—H2 | 125.8 | C8—C9—H9 | 119.5 |
| C4—C3—C2 | 107.0 (2) | C11—C10—C9 | 120.0 (2) |
| C4—C3—H3 | 126.5 | C11—C10—H10 | 120.0 |
| C2—C3—H3 | 126.5 | C9—C10—H10 | 120.0 |
| N1—C4—C3 | 108.6 (2) | C12—C11—C10 | 119.9 (2) |
| N1—C4—H4 | 125.7 | C12—C11—H11 | 120.0 |
| C3—C4—H4 | 125.7 | C10—C11—H11 | 120.0 |
| O1—C5—C1 | 121.92 (19) | C11—C12—C13 | 120.2 (3) |
| O1—C5—C6 | 121.0 (2) | C11—C12—H12 | 119.9 |
| C1—C5—C6 | 117.1 (2) | C13—C12—H12 | 119.9 |
| C7—C6—C5 | 123.2 (2) | C12—C13—C8 | 120.6 (2) |
| C7—C6—H6 | 118.4 | C12—C13—H13 | 119.7 |
| C5—C6—H6 | 118.4 | C8—C13—H13 | 119.7 |
| C4—N1—C1—C2 | 0.4 (2) | C1—C5—C6—C7 | 178.6 (2) |
| C4—N1—C1—C5 | 178.7 (2) | C5—C6—C7—C8 | −179.1 (2) |
| N1—C1—C2—C3 | −0.3 (3) | C6—C7—C8—C13 | −7.4 (3) |
| C5—C1—C2—C3 | −178.3 (2) | C6—C7—C8—C9 | 171.7 (2) |
| C1—C2—C3—C4 | 0.1 (3) | C13—C8—C9—C10 | 1.6 (3) |
| C1—N1—C4—C3 | −0.3 (3) | C7—C8—C9—C10 | −177.45 (19) |
| C2—C3—C4—N1 | 0.2 (3) | C8—C9—C10—C11 | −0.5 (3) |
| N1—C1—C5—O1 | −1.8 (3) | C9—C10—C11—C12 | −0.5 (4) |
| C2—C1—C5—O1 | 175.9 (2) | C10—C11—C12—C13 | 0.2 (4) |
| N1—C1—C5—C6 | 179.22 (18) | C11—C12—C13—C8 | 1.0 (4) |
| C2—C1—C5—C6 | −3.0 (4) | C9—C8—C13—C12 | −1.9 (3) |
| O1—C5—C6—C7 | −0.4 (3) | C7—C8—C13—C12 | 177.2 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O1i | 0.86 | 2.02 | 2.817 (2) | 155 |
| C7—H7···O1 | 0.93 | 2.51 | 2.835 (3) | 101 |
Symmetry codes: (i) −x+1, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FB2072).
References
- Bruker (2002). SAINT (Version 6.36A), SMART (Version 5.626) and SHELXTL (Version 6.10). Bruker AXS Inc., Madison, Wisconsin, USA.
- Chen, M., Zhai, L., Christensen, S. B., Theander, T. G. & Kharazami, A. (1999). Antimicrob. Agents Chemother.43, 793–801.
- Dimmock, J. R., Elias, D. W., Beazely, M. A. & Kandepu, N. (1999). Curr. Med. Chem.6, 1125–1149. [PubMed]
- Etter, M. C., MacDonald, J. C. & Bernstein, J. (1990). Acta Cryst. B46, 256–262. [DOI] [PubMed]
- Go, M. L., Wu, X. & Liu, X.-L. (2005). Curr. Med. Chem.12, 481–499. [DOI] [PubMed]
- Gong, Z.-Q. & Shen, Y.-L. (2007). Acta Cryst. E63, o3939.
- Kumaran, D., Eswaramoorthy, S., Ponnuswamy, M. N., Raju, K. S. & Nanjundan, S. (1996). Acta Cryst. C52, 2543–2545.
- Lin, Y. M., Zhou, Y., Flavin, M. T., Zhou, L. M., Nie, W. & Chen, F. C. (2002). Bioorg. Med. Chem.16, 2795–2802. [DOI] [PubMed]
- Lunardi, F., Guzhela, M., Rodrigues, A. T., Correa, R., Calixtio, J. B. & Santos, A. R. S. (2003). Antimicrob. Agents Chemother.47, 1449–1456. [DOI] [PMC free article] [PubMed]
- Opletalova, V. (2000). Ceska Slov. Farm.49, 278–284. [PubMed]
- Shanmuga Sundara Raj, S., Ponnuswamy, M. N., Shanmugam, G. & Nanjundan, S. (1997). Acta Cryst. C53, 917–918.
- Shanmuga Sundara Raj, S., Ponnuswamy, M. N., Shanmugam, G. & Nanjundan, S. (1998). Acta Cryst. C54, 541–542.
- Sheldrick, G. M. (1990). Acta Cryst. A46, 467–473.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (1997). SHELXL97 University of Göttingen, Germany.
- Spek, A. L. (2003). J. Appl. Cryst.36, 7–13.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807063489/fb2072sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063489/fb2072Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


