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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2007 Dec 6;64(Pt 1):o160. doi: 10.1107/S1600536807064756

N-(4-Bromo­benzo­yl)-N,N′-dicyclo­hexyl­urea

Ya-Wen Wang a, Yu Peng a,*
PMCID: PMC2915228  PMID: 21200726

Abstract

In the title compound, C20H27BrN2O2, mol­ecules are linked into one-dimensional chains through (amide)N—H⋯O=C(amide) inter­molecular hydrogen bonds.

Related literature

For related literature, see: Bohne et al. (2005); Bondy et al. (2004); Bruker (2000); Ślebioda (1995). For literature on related crystal structures, see: Ball et al. (1990); Chérioux et al. (2002); Gallagher et al. (1999); Govindasamy & Subramanian (1997); Toniolo et al. (1990); Wu et al. (2006).graphic file with name e-64-0o160-scheme1.jpg

Experimental

Crystal data

  • C20H27BrN2O2

  • M r = 407.35

  • Monoclinic, Inline graphic

  • a = 13.501 (2) Å

  • b = 9.5621 (10) Å

  • c = 16.306 (2) Å

  • β = 114.443 (6)°

  • V = 1916.3 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 2.16 mm−1

  • T = 113 (2) K

  • 0.38 × 0.16 × 0.14 mm

Data collection

  • Rigaku Saturn CCD diffractometer

  • Absorption correction: multi-scan (REQABS; Jacobson, 1998) T min = 0.484, T max = 0.739

  • 17461 measured reflections

  • 4526 independent reflections

  • 3651 reflections with I > 2σ(I)

  • R int = 0.044

Refinement

  • R[F 2 > 2σ(F 2)] = 0.036

  • wR(F 2) = 0.078

  • S = 1.06

  • 4526 reflections

  • 231 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.45 e Å−3

  • Δρmin = −0.44 e Å−3

Data collection: CrystalClear (Jacobson, 1999); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: CrystalStructure (Rigaku, 1999).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807064756/pk2071sup1.cif

e-64-0o160-sup1.cif (20.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536807064756/pk2071Isup2.hkl

e-64-0o160-Isup2.hkl (221.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2A⋯O2i 0.898 (10) 2.072 (11) 2.961 (2) 170 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors acknowledge financial support from the Research Fund for New Faculty at the State Key Laboratory of Applied Organic Chemistry.

supplementary crystallographic information

Comment

The first conscious total synthesis of a natural product was that of urea in 1828 by Wohler, which marks the beginnings of organic synthesis. Since then, many urea derivatives have been prepared and have demonstrated a wide range of uses, including fluorescence probes (Bohne et al., 2005) and anion receptors (Bondy et al., 2004).

The title compound, an N-acylurea derivative, can be conveniently prepared from dicyclohexylcarbodiimide (DCC) and p-bromobenzoic acid according to reported methods (Ślebioda, 1995). The molecular structure is shown in Fig.1. Each cyclohexyl group adopts the chair conformation, as is required for energy minimization. The two carbonyl groups are twisted substantially at the central atom, N1, with a dihedral angle of 66.43 (10)° between the O1/C7/N1 and O2/C14/N2 planes, which increases the distance between atoms O1 and N2. As a result, no intramolecular N2–H2A···O1 hydrogen bond is formed. However, molecules are linked into chains through (amide) N–H···O=C (amide) intermolecular hydrogen bonds, reinforced by C–H···O=C interactions. Surprisingly, this supramolecular arrangement is not observed in a closely related X-ray structure (Gallagher et al., 1999).

Experimental

p-bromobenzoic acid (201 mg, 1 mmol) was dissolved in CHCl3 (5 ml) and DCC (206 mg, 1 mmol) and N,N-dimethylpyridin-4-amine (122 mg, 1 mmol) were added to the solution. The resulting mixture was stirred for 1 h at 298 K. After evaporation of the solvent, a colorless solid was isolated. Single crystals suitable for X-ray structure determination were obtained by slow evaporation of a EtOAc solution over a period of several days.

Refinement

The H atom bonded to N2 was found in a difference map and refined freely to obtain an unbiased geometry for the hydrogen bonding scheme. The H atoms bonded to C were placed geometrically (C—H values were set to 1.00, 0.99 and 0.95 A° for atoms CH2 and CH, respectively) and refined with a riding model, with Uiso(H) = 1.2 times Ueq(C).

Figures

Fig. 1.

Fig. 1.

An ellipsoid plot of the title compound, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.

Crystal data

C20H27BrN2O2 F000 = 848
Mr = 407.35 Dx = 1.412 Mg m3
Monoclinic, P21/n Mo Kα radiation λ = 0.71070 Å
Hall symbol: -P 2yn Cell parameters from 4164 reflections
a = 13.501 (2) Å θ = 1.7–27.9º
b = 9.5621 (10) Å µ = 2.16 mm1
c = 16.306 (2) Å T = 113 (2) K
β = 114.443 (6)º Prism, colorless
V = 1916.3 (4) Å3 0.38 × 0.16 × 0.14 mm
Z = 4

Data collection

Rigaku Saturn CCD diffractometer 4526 independent reflections
Radiation source: Rotating anode 3651 reflections with I > 2σ(I)
Monochromator: confocal Rint = 0.044
Detector resolution: 7.31 pixels mm-1 θmax = 27.9º
T = 113(2) K θmin = 1.7º
ω scans h = −17→17
Absorption correction: multi-scan(REQABS; Jacobson, 1998) k = −12→12
Tmin = 0.484, Tmax = 0.739 l = −21→20
17461 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.078   w = 1/[σ2(Fo2) + (0.0381P)2] where P = (Fo2 + 2Fc2)/3
S = 1.06 (Δ/σ)max = 0.003
4526 reflections Δρmax = 0.45 e Å3
231 parameters Δρmin = −0.44 e Å3
1 restraint Extinction correction: none
Primary atom site location: structure-invariant direct methods

Special details

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.615319 (17) 0.39160 (2) 1.092233 (14) 0.03591 (9)
N1 0.86443 (11) 0.53780 (15) 0.80694 (9) 0.0172 (3)
N2 0.67615 (11) 0.53992 (16) 0.73657 (10) 0.0180 (3)
O1 0.95485 (9) 0.68643 (13) 0.92419 (8) 0.0226 (3)
O2 0.76754 (10) 0.34042 (13) 0.73292 (8) 0.0234 (3)
C1 0.69576 (14) 0.4583 (2) 1.02792 (12) 0.0233 (4)
C2 0.69278 (15) 0.5987 (2) 1.00682 (13) 0.0267 (4)
H2 0.6508 0.6624 1.0240 0.032*
C3 0.75215 (15) 0.6450 (2) 0.96011 (13) 0.0246 (4)
H3 0.7519 0.7414 0.9460 0.029*
C4 0.81235 (13) 0.55047 (19) 0.93373 (11) 0.0176 (4)
C5 0.81418 (14) 0.40955 (19) 0.95585 (12) 0.0205 (4)
H5 0.8551 0.3450 0.9381 0.025*
C6 0.75616 (14) 0.3634 (2) 1.00396 (12) 0.0223 (4)
H6 0.7581 0.2677 1.0202 0.027*
C7 0.88221 (13) 0.60122 (18) 0.88777 (12) 0.0179 (4)
C8 0.94261 (14) 0.55666 (19) 0.76516 (12) 0.0199 (4)
H8 0.9907 0.6372 0.7963 0.024*
C9 1.01578 (15) 0.4287 (2) 0.77921 (14) 0.0259 (4)
H9A 0.9702 0.3452 0.7531 0.031*
H9B 1.0574 0.4122 0.8445 0.031*
C10 1.09504 (16) 0.4493 (2) 0.73482 (14) 0.0331 (5)
H10A 1.1462 0.5260 0.7656 0.040*
H10B 1.1380 0.3628 0.7415 0.040*
C11 1.03445 (17) 0.4842 (2) 0.63510 (14) 0.0361 (5)
H11A 0.9878 0.4043 0.6032 0.043*
H11B 1.0874 0.5007 0.6086 0.043*
C12 0.96424 (17) 0.6143 (2) 0.62288 (14) 0.0341 (5)
H12A 0.9238 0.6338 0.5578 0.041*
H12B 1.0117 0.6956 0.6507 0.041*
C13 0.88348 (15) 0.5955 (2) 0.66570 (13) 0.0268 (4)
H13A 0.8424 0.6834 0.6599 0.032*
H13B 0.8308 0.5210 0.6335 0.032*
C14 0.76568 (14) 0.4618 (2) 0.75616 (11) 0.0180 (4)
C15 0.56540 (13) 0.48403 (19) 0.69141 (12) 0.0180 (4)
H15 0.5702 0.3853 0.6733 0.022*
C16 0.50196 (16) 0.5682 (2) 0.60708 (13) 0.0313 (5)
H16A 0.5392 0.5639 0.5661 0.038*
H16B 0.4987 0.6673 0.6233 0.038*
C17 0.38642 (16) 0.5099 (2) 0.55931 (15) 0.0399 (6)
H17A 0.3452 0.5668 0.5051 0.048*
H17B 0.3899 0.4128 0.5396 0.048*
C18 0.32755 (16) 0.5114 (2) 0.62076 (18) 0.0509 (7)
H18A 0.3189 0.6091 0.6368 0.061*
H18B 0.2542 0.4702 0.5890 0.061*
C19 0.39104 (16) 0.4288 (2) 0.70547 (16) 0.0403 (6)
H19A 0.3934 0.3293 0.6896 0.048*
H19B 0.3535 0.4344 0.7462 0.048*
C20 0.50804 (16) 0.4842 (2) 0.75473 (14) 0.0296 (5)
H20A 0.5063 0.5805 0.7764 0.036*
H20B 0.5487 0.4245 0.8077 0.036*
H2A 0.6851 (15) 0.6326 (10) 0.7456 (12) 0.023 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.03720 (13) 0.04748 (17) 0.03229 (13) −0.01255 (10) 0.02362 (10) −0.00410 (10)
N1 0.0147 (7) 0.0164 (8) 0.0206 (8) −0.0024 (6) 0.0075 (6) −0.0004 (6)
N2 0.0154 (7) 0.0136 (9) 0.0238 (8) −0.0013 (6) 0.0070 (6) −0.0024 (7)
O1 0.0190 (6) 0.0223 (7) 0.0233 (7) −0.0054 (6) 0.0056 (5) −0.0015 (6)
O2 0.0213 (6) 0.0140 (7) 0.0322 (8) 0.0006 (5) 0.0084 (6) −0.0032 (6)
C1 0.0217 (9) 0.0320 (12) 0.0174 (9) −0.0071 (8) 0.0093 (8) −0.0027 (9)
C2 0.0257 (10) 0.0269 (12) 0.0320 (11) −0.0048 (8) 0.0165 (9) −0.0102 (9)
C3 0.0259 (10) 0.0198 (11) 0.0297 (10) −0.0034 (8) 0.0132 (8) −0.0030 (9)
C4 0.0141 (8) 0.0212 (10) 0.0151 (8) −0.0030 (7) 0.0037 (7) −0.0019 (8)
C5 0.0164 (8) 0.0239 (11) 0.0194 (9) 0.0003 (8) 0.0057 (7) 0.0005 (8)
C6 0.0218 (9) 0.0244 (11) 0.0191 (9) −0.0012 (8) 0.0067 (8) 0.0040 (8)
C7 0.0145 (8) 0.0166 (10) 0.0198 (9) 0.0026 (7) 0.0045 (7) 0.0037 (8)
C8 0.0171 (9) 0.0203 (10) 0.0252 (10) −0.0019 (7) 0.0117 (8) −0.0001 (8)
C9 0.0188 (9) 0.0267 (11) 0.0306 (11) 0.0044 (8) 0.0087 (8) 0.0030 (9)
C10 0.0221 (10) 0.0396 (13) 0.0405 (12) 0.0087 (9) 0.0159 (9) 0.0002 (11)
C11 0.0321 (11) 0.0479 (14) 0.0351 (12) 0.0045 (10) 0.0209 (10) −0.0050 (11)
C12 0.0348 (11) 0.0463 (14) 0.0290 (11) 0.0046 (10) 0.0210 (10) 0.0048 (10)
C13 0.0245 (10) 0.0332 (12) 0.0264 (10) 0.0058 (9) 0.0144 (8) 0.0065 (9)
C14 0.0176 (9) 0.0184 (10) 0.0179 (9) −0.0019 (7) 0.0074 (7) 0.0019 (8)
C15 0.0141 (8) 0.0162 (10) 0.0219 (9) −0.0008 (7) 0.0055 (7) −0.0019 (8)
C16 0.0314 (11) 0.0229 (11) 0.0270 (11) −0.0040 (9) −0.0006 (9) 0.0023 (9)
C17 0.0268 (11) 0.0284 (13) 0.0408 (13) 0.0028 (9) −0.0096 (10) 0.0015 (10)
C18 0.0150 (10) 0.0391 (14) 0.0841 (19) 0.0034 (10) 0.0060 (12) −0.0301 (14)
C19 0.0277 (11) 0.0528 (15) 0.0518 (15) −0.0179 (10) 0.0279 (11) −0.0276 (12)
C20 0.0262 (10) 0.0367 (13) 0.0304 (11) −0.0088 (9) 0.0163 (9) −0.0101 (10)

Geometric parameters (Å, °)

Br1—C1 1.9048 (18) C10—H10A 0.9900
N1—C7 1.379 (2) C10—H10B 0.9900
N1—C14 1.441 (2) C11—C12 1.526 (3)
N1—C8 1.485 (2) C11—H11A 0.9900
N2—C14 1.342 (2) C11—H11B 0.9900
N2—C15 1.467 (2) C12—C13 1.529 (2)
N2—H2A 0.898 (9) C12—H12A 0.9900
O1—C7 1.223 (2) C12—H12B 0.9900
O2—C14 1.225 (2) C13—H13A 0.9900
C1—C6 1.380 (3) C13—H13B 0.9900
C1—C2 1.382 (3) C15—C16 1.516 (2)
C2—C3 1.387 (3) C15—C20 1.526 (2)
C2—H2 0.9500 C15—H15 1.0000
C3—C4 1.397 (3) C16—C17 1.531 (3)
C3—H3 0.9500 C16—H16A 0.9900
C4—C5 1.393 (3) C16—H16B 0.9900
C4—C7 1.507 (2) C17—C18 1.515 (3)
C5—C6 1.390 (2) C17—H17A 0.9900
C5—H5 0.9500 C17—H17B 0.9900
C6—H6 0.9500 C18—C19 1.512 (3)
C8—C13 1.528 (2) C18—H18A 0.9900
C8—C9 1.529 (3) C18—H18B 0.9900
C8—H8 1.0000 C19—C20 1.540 (3)
C9—C10 1.532 (3) C19—H19A 0.9900
C9—H9A 0.9900 C19—H19B 0.9900
C9—H9B 0.9900 C20—H20A 0.9900
C10—C11 1.524 (3) C20—H20B 0.9900
C7—N1—C14 121.65 (14) C11—C12—C13 111.49 (17)
C7—N1—C8 120.63 (14) C11—C12—H12A 109.3
C14—N1—C8 117.50 (14) C13—C12—H12A 109.3
C14—N2—C15 123.18 (15) C11—C12—H12B 109.3
C14—N2—H2A 117.5 (12) C13—C12—H12B 109.3
C15—N2—H2A 118.8 (12) H12A—C12—H12B 108.0
C6—C1—C2 121.85 (17) C8—C13—C12 110.81 (16)
C6—C1—Br1 118.30 (15) C8—C13—H13A 109.5
C2—C1—Br1 119.85 (14) C12—C13—H13A 109.5
C1—C2—C3 118.86 (18) C8—C13—H13B 109.5
C1—C2—H2 120.6 C12—C13—H13B 109.5
C3—C2—H2 120.6 H13A—C13—H13B 108.1
C2—C3—C4 120.33 (18) O2—C14—N2 125.83 (16)
C2—C3—H3 119.8 O2—C14—N1 121.54 (16)
C4—C3—H3 119.8 N2—C14—N1 112.60 (16)
C5—C4—C3 119.75 (17) N2—C15—C16 109.75 (14)
C5—C4—C7 119.52 (16) N2—C15—C20 110.93 (14)
C3—C4—C7 120.56 (17) C16—C15—C20 111.03 (16)
C6—C5—C4 119.98 (17) N2—C15—H15 108.3
C6—C5—H5 120.0 C16—C15—H15 108.3
C4—C5—H5 120.0 C20—C15—H15 108.3
C1—C6—C5 119.22 (18) C15—C16—C17 110.02 (16)
C1—C6—H6 120.4 C15—C16—H16A 109.7
C5—C6—H6 120.4 C17—C16—H16A 109.7
O1—C7—N1 122.99 (16) C15—C16—H16B 109.7
O1—C7—C4 120.93 (16) C17—C16—H16B 109.7
N1—C7—C4 115.88 (15) H16A—C16—H16B 108.2
N1—C8—C13 110.98 (14) C18—C17—C16 111.28 (18)
N1—C8—C9 111.83 (15) C18—C17—H17A 109.4
C13—C8—C9 112.02 (16) C16—C17—H17A 109.4
N1—C8—H8 107.2 C18—C17—H17B 109.4
C13—C8—H8 107.2 C16—C17—H17B 109.4
C9—C8—H8 107.2 H17A—C17—H17B 108.0
C8—C9—C10 111.13 (16) C19—C18—C17 110.18 (17)
C8—C9—H9A 109.4 C19—C18—H18A 109.6
C10—C9—H9A 109.4 C17—C18—H18A 109.6
C8—C9—H9B 109.4 C19—C18—H18B 109.6
C10—C9—H9B 109.4 C17—C18—H18B 109.6
H9A—C9—H9B 108.0 H18A—C18—H18B 108.1
C11—C10—C9 111.13 (16) C18—C19—C20 111.59 (18)
C11—C10—H10A 109.4 C18—C19—H19A 109.3
C9—C10—H10A 109.4 C20—C19—H19A 109.3
C11—C10—H10B 109.4 C18—C19—H19B 109.3
C9—C10—H10B 109.4 C20—C19—H19B 109.3
H10A—C10—H10B 108.0 H19A—C19—H19B 108.0
C10—C11—C12 110.37 (17) C15—C20—C19 110.18 (16)
C10—C11—H11A 109.6 C15—C20—H20A 109.6
C12—C11—H11A 109.6 C19—C20—H20A 109.6
C10—C11—H11B 109.6 C15—C20—H20B 109.6
C12—C11—H11B 109.6 C19—C20—H20B 109.6
H11A—C11—H11B 108.1 H20A—C20—H20B 108.1
C6—C1—C2—C3 0.1 (3) C13—C8—C9—C10 54.1 (2)
Br1—C1—C2—C3 179.88 (14) C8—C9—C10—C11 −55.5 (2)
C1—C2—C3—C4 1.0 (3) C9—C10—C11—C12 57.0 (2)
C2—C3—C4—C5 −1.1 (3) C10—C11—C12—C13 −57.3 (2)
C2—C3—C4—C7 −176.41 (17) N1—C8—C13—C12 −179.79 (15)
C3—C4—C5—C6 0.0 (3) C9—C8—C13—C12 −54.0 (2)
C7—C4—C5—C6 175.39 (15) C11—C12—C13—C8 55.7 (2)
C2—C1—C6—C5 −1.2 (3) C15—N2—C14—O2 6.6 (3)
Br1—C1—C6—C5 179.06 (13) C15—N2—C14—N1 −175.26 (14)
C4—C5—C6—C1 1.1 (3) C7—N1—C14—O2 −125.42 (18)
C14—N1—C7—O1 −166.44 (16) C8—N1—C14—O2 60.0 (2)
C8—N1—C7—O1 7.9 (2) C7—N1—C14—N2 56.4 (2)
C14—N1—C7—C4 18.6 (2) C8—N1—C14—N2 −118.19 (17)
C8—N1—C7—C4 −167.06 (14) C14—N2—C15—C16 −124.11 (18)
C5—C4—C7—O1 −117.18 (19) C14—N2—C15—C20 112.83 (19)
C3—C4—C7—O1 58.1 (2) N2—C15—C16—C17 179.70 (16)
C5—C4—C7—N1 57.9 (2) C20—C15—C16—C17 −57.3 (2)
C3—C4—C7—N1 −126.75 (18) C15—C16—C17—C18 57.9 (2)
C7—N1—C8—C13 −131.60 (17) C16—C17—C18—C19 −57.3 (2)
C14—N1—C8—C13 43.0 (2) C17—C18—C19—C20 56.3 (2)
C7—N1—C8—C9 102.52 (19) N2—C15—C20—C19 178.56 (17)
C14—N1—C8—C9 −82.87 (19) C16—C15—C20—C19 56.2 (2)
N1—C8—C9—C10 179.38 (15) C18—C19—C20—C15 −55.8 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2A···O2i 0.898 (10) 2.072 (11) 2.961 (2) 170 (2)

Symmetry codes: (i) −x+3/2, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PK2071).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807064756/pk2071sup1.cif

e-64-0o160-sup1.cif (20.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536807064756/pk2071Isup2.hkl

e-64-0o160-Isup2.hkl (221.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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