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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2007 Dec 6;64(Pt 1):o225. doi: 10.1107/S1600536807064999

4′-(2,5,8,11,14-Penta­oxabicyclo­[13.4.0]nona­deca-15,17,19-trien-17-yl­oxy)-2,2′:6′,2′′-terpyridine: a powder study

Nadezhda M Logacheva a, Tamara P Puryaeva a, Aslan Yu Tsivadze a, Yurii A Velikodny b, Vladimir V Chernyshev a,b,*
PMCID: PMC2915286  PMID: 21200792

Abstract

The central pyridine ring of the 2,2′:6′,2′′-terpyridine fragment of the title compound, C29H29N3O6, forms dihedral angles of 5.2 (5), 10.1 (5) and 86.0 (6)°, respectively, with the two outer pyridine rings and the benzene ring of the benzo-15-crown-5 fragment.

Related literature

For related crystal structures determined from synchrotron powder diffraction data, see Dorokhov et al. (2007). For useful applications of 2,2′:6′,2"-terpyridine derivatives, see Andres et al. (2003). For details of the synthesis of the title compound, see: Constable & Ward (1990); Chitta et al. (2004); Kobayashi (2001). For details of the indexing algorithm, see Visser (1969).graphic file with name e-64-0o225-scheme1.jpg

Experimental

Crystal data

  • C29H29N3O6

  • M r = 515.55

  • Orthorhombic, Inline graphic

  • a = 58.347 (11) Å

  • b = 33.712 (3) Å

  • c = 5.3211 (8) Å

  • V = 10467 (3) Å3

  • Z = 16

  • Cu Kα1 radiation

  • λ = 1.54059 Å

  • μ = 0.76 mm−1

  • T = 295 (2) K

  • Specimen shape: flat sheet

  • 15 × 1 × 1 mm

  • Specimen prepared at 295 (2) K and 101 kPa

  • Particle morphology: no specific habit, colourless

Data collection

  • G670 Guinier camera diffractometer

  • Specimen mounting: thin layer in the specimen holder of the camera

  • Specimen mounted in transmission mode

  • Scan method: continuous

  • Absorption correction: none

  • min = 4.5, 2θmax = 75.0°

  • Increment in 2θ = 0.01°

Refinement

  • R p = 0.019

  • R wp = 0.024

  • R exp = 0.018

  • R B = 0.023

  • S = 1.36

  • Excluded region(s): none

  • Profile function: split-type pseudo-Voigt (Toraya, 1986)

  • 148 parameters

  • 173 restraints

  • H-atom parameters not refined

  • Preferred orientation correction: none

Data collection: local program (Huber, 2002); cell refinement: MRIA (Zlokazov & Chernyshev, 1992); data reduction: local program (Huber, 2002); program(s) used to solve structure: grid search (Chernyshev & Schenk, 1998); program(s) used to refine structure: MRIA; molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: MRIA, SHELXL97 (Sheldrick, 1997).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807064999/ya2062sup1.cif

e-64-0o225-sup1.cif (16.8KB, cif)

Rietveld powder data: contains datablocks I. DOI: 10.1107/S1600536807064999/ya2062Isup2.rtv

e-64-0o225-Isup2.rtv (289.7KB, rtv)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

supplementary crystallographic information

Comment

Ability of 2,2':6',2"-terpyridines to form complexes with transition metals, such as Zn(II), Fe(II), Co(II), Ni(II) and Ru(II) is widely used in supramolecular chemistry to control self organization processes. Introduction of additional fragments with various coordinating groups to a molecule of 2,2':6',2"-terpyridine opens broad prospects for purposeful design of supramolecular compounds (Andres et al., 2003). 4'-(Benzo-15-crown-5) substituted 2,2':6',2"-terpyridines represent a new interesting class of compounds involving both terpyridine fragment, which selectively binds the d-element cations, and benzo-15-crown-5 with unique ability for complexation of cations of alkaline, alkaline-earth metals as well as those of organic amines. Compounds of this class offer new opportunities for use of metal-ligand interactions for controllable assembly of the supramolecular complexes. We present here the structure of title compound, (I).

In (I) (Fig. 1), all bond lengths and angles are comparable with those reported earlier for the related compounds (Dorokhov et al., 2007). The six-membered rings N2/C5—C9 (A), N3/C10—C14 (B), N4/C15—C19 (C) and C25—C30 (D) form the following dihedral angles - A/B 5.2 (5)°, A/C 10.1 (5)° and A/D 86.0 (6)°.

Experimental

The synthesis of 2,2':6',2"-terpyridine was carried out according to Constable & Ward (1990). 4'-Hydroxy-benzo-15-crown-5 was obtained on the basis of commercially accessible benzo-15-crown-5 by the formylation reaction (Chitta et al., 2004) and the subsequent oxidizing decarbonylation (Kobayashi, 2001). 4'-(4'''-Benzo-15-crown-5)-oxy-2,2':6',2''-terpyridine has been synthesized using reaction of nucleophilic replacement of 4'-chloro-2,2':6',2''-terpyridine with 4'-hydroxy-benzo-15-crown-5 in the dry DMSO in the presence of a base (KOH).

The synthesis of 4'-(4'''-benzo-15-crown-5)-oxy-2,2':6',2''-terpyridine (Scheme 2): to a stirred suspension of powdered KOH (890 mg, 15,90 mmol) in dry DMSO (12 ml) in the argon atmosphere at 70 °C, the 4'-hydroxy-benzo-15-crown-5 (928 mg, 3,269 mmol) was added. After 30 min, 4'-chloro-2,2':6',2''-terpyridine (873 mg, 3,269 mmol) was added and the mixture was stirred for 8 h at 70 °C and then poured into 150 ml of ice water. The water phase was extracted with chloroform (150 x 100 x 50 x 50 ml), dried over MgSO4 and evaporated in vacuum. The residue (20 ml) was purified by column chromatography on the neutral Al2O3 (CHCl3). After evaporation, the product, obtained as a yellowish oil, was crystallized from diethyl ether, then filtered and washed on the filter by the cooled diethyl ether, recrystallized from methyl alcohol (25 ml) and dried in vacuum at 60 °C. The yield of the target product as white solid was 623 mg (37,2%). (M. p. = 151 °C)

Refinement

During the exposure, the specimen was spun in its plane to improve particle statistics. The orthorhombic unit-cell dimensions were determined with the indexing program ITO (Visser, 1969), M20=44, using the first 35 peak positions. The space group Fdd2 was chosen on the basis of systematic extinction rules and confirmed later by the crystal structure solution. The structure of (I) was solved by the systematic grid search procedure (Chernyshev & Schenk, 1998) and refined following the methodology described in detail elsewhere (Dorokhov et al., 2007) by the subsequent bond-restrained Rietveld refinement with the program MRIA (Zlokazov & Chernyshev, 1992). All O atoms were refined isotropically with the overall Uiso parameter. The Uiso for the rest of non-H atoms were fixed at 0.051 Å2. All H atoms were placed in geometrically calculated positions and not refined. The diffraction profiles and the differences between the measured and calculated profiles are shown in Fig. 2.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) with the atomic numbering and 50% displacement spheres. H atoms omitted for clarity.

Fig. 2.

Fig. 2.

The Rietveld plot, showing the observed and difference profiles for (I). The reflection positions are shown above the difference profile.

Fig. 3.

Fig. 3.

The formation of the title compound.

Crystal data

C29H29N3O6 Dx = 1.309 Mg m3
Mr = 515.55 Cu Kα1 radiation λ = 1.54059 Å
Orthorhombic, Fdd2 µ = 0.76 mm1
a = 58.347 (11) Å T = 295 (2) K
b = 33.712 (3) Å Specimen shape: flat_sheet
c = 5.3211 (8) Å 15 × 1 × 1 mm
V = 10467 (3) Å3 Specimen prepared at 101 kPa
Z = 16 Specimen prepared at 295(2) K
F000 = 4352 Particle morphology: no specific habit, colourless

Data collection

Guinier camera G670 diffractometer Scan method: continuous
Radiation source: line-focus sealed tube T = 295(2) K
Monochromator: Curved Germanium (111) min = 4.50, 2θmax = 75.00º
Specimen mounting: thin layer in the specimen holder of the camera Increment in 2θ = 0.01º
Specimen mounted in transmission mode Increment in 2θ = 0.01º

Refinement

Refinement on Inet Profile function: split-type pseudo-Voigt (Toraya, 1986)
Least-squares matrix: full with fixed elements per cycle 148 parameters
Rp = 0.019 173 restraints
Rwp = 0.024 7 constraints
Rexp = 0.018 H-atom parameters not refined
RB = 0.023 Weighting scheme based on measured s.u.'s ?
S = 1.36 (Δ/σ)max = 0.007
Wavelength of incident radiation: 1.54059 Å Extinction correction: none
Excluded region(s): none Preferred orientation correction: none

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 −0.0046 (3) 0.6614 (4) 0.1346 0.067 (3)*
N2 0.0097 (3) 0.5679 (6) 0.655 (3) 0.051*
N3 0.0633 (3) 0.5704 (6) 0.288 (4) 0.051*
N4 −0.0478 (3) 0.6009 (6) 0.858 (4) 0.051*
C5 0.0253 (4) 0.5800 (7) 0.478 (4) 0.051*
C6 0.0209 (4) 0.6110 (7) 0.301 (4) 0.051*
H6 0.0319 0.6180 0.1824 0.061*
C7 0.0000 (4) 0.6304 (7) 0.310 (4) 0.051*
C8 −0.0160 (4) 0.6196 (7) 0.486 (4) 0.051*
H8 −0.0301 0.6325 0.4940 0.061*
C9 −0.0108 (4) 0.5887 (7) 0.654 (4) 0.051*
C10 0.0482 (4) 0.5595 (7) 0.471 (4) 0.051*
C11 0.0544 (4) 0.5322 (6) 0.660 (4) 0.051*
H11 0.0445 0.5270 0.7934 0.061*
C12 0.0756 (3) 0.5132 (7) 0.645 (4) 0.051*
H12 0.0798 0.4945 0.7643 0.061*
C13 0.0905 (4) 0.5225 (7) 0.448 (4) 0.051*
H13 0.1045 0.5096 0.4299 0.061*
C14 0.0837 (4) 0.5518 (7) 0.278 (4) 0.051*
H14 0.0938 0.5589 0.1510 0.061*
C15 −0.0286 (3) 0.5771 (6) 0.840 (3) 0.051*
C16 −0.0263 (4) 0.5425 (7) 0.984 (4) 0.051*
H16 −0.0137 0.5259 0.9615 0.061*
C17 −0.0431 (4) 0.5332 (7) 1.161 (4) 0.051*
H17 −0.0415 0.5110 1.2628 0.061*
C18 −0.0624 (4) 0.5579 (7) 1.183 (4) 0.051*
H18 −0.0744 0.5516 1.2909 0.061*
C19 −0.0630 (4) 0.5925 (7) 1.035 (4) 0.051*
H19 −0.0748 0.6106 1.0631 0.061*
O20 −0.0608 (2) 0.7962 (4) 0.187 (3) 0.067 (3)*
O21 −0.0911 (2) 0.8612 (4) 0.246 (3) 0.067 (3)*
O22 −0.1263 (3) 0.8329 (4) −0.111 (3) 0.067 (3)*
O23 −0.1184 (2) 0.7296 (4) −0.314 (3) 0.067 (3)*
O24 −0.0706 (2) 0.7416 (4) −0.138 (3) 0.067 (3)*
C25 −0.0511 (4) 0.7344 (7) −0.001 (4) 0.051*
C26 −0.0454 (4) 0.7653 (7) 0.176 (4) 0.051*
C27 −0.0263 (3) 0.7608 (7) 0.327 (4) 0.051*
H27 −0.0215 0.7816 0.4291 0.061*
C28 −0.0139 (4) 0.7242 (7) 0.325 (4) 0.051*
H28 −0.0025 0.7196 0.4433 0.061*
C29 −0.0190 (4) 0.6956 (8) 0.146 (4) 0.051*
C30 −0.0376 (3) 0.6998 (6) −0.014 (4) 0.051*
H30 −0.0411 0.6800 −0.1292 0.061*
C31 −0.0540 (4) 0.8312 (7) 0.328 (4) 0.051*
H31A −0.0444 0.8235 0.4689 0.061*
H31B −0.0453 0.8490 0.2215 0.061*
C32 −0.0743 (4) 0.8510 (7) 0.419 (4) 0.051*
H32A −0.0813 0.8341 0.5447 0.061*
H32B −0.0695 0.8751 0.5038 0.061*
C33 −0.1144 (3) 0.8536 (7) 0.324 (4) 0.051*
H33A −0.1188 0.8739 0.4437 0.061*
H33B −0.1147 0.8284 0.4119 0.061*
C34 −0.1324 (4) 0.8524 (7) 0.116 (4) 0.051*
H34A −0.1460 0.8396 0.1823 0.061*
H34B −0.1366 0.8795 0.0750 0.061*
C35 −0.1172 (4) 0.7936 (7) −0.091 (4) 0.051*
H35A −0.1202 0.7829 0.0754 0.061*
H35B −0.1008 0.7940 −0.1177 0.061*
C36 −0.1289 (4) 0.7680 (7) −0.291 (4) 0.051*
H36A −0.1449 0.7647 −0.2477 0.061*
H36B −0.1281 0.7815 −0.4518 0.061*
C37 −0.0982 (4) 0.7268 (6) −0.462 (4) 0.051*
H37A −0.0945 0.7529 −0.5273 0.061*
H37B −0.1012 0.7095 −0.6039 0.061*
C38 −0.0776 (4) 0.7110 (6) −0.319 (4) 0.051*
H38A −0.0816 0.6867 −0.2314 0.061*
H38B −0.0651 0.7053 −0.4341 0.061*

Geometric parameters (Å, °)

O1—C7 1.43 (3) C28—C29 1.39 (3)
O1—C29 1.43 (3) C29—C30 1.39 (3)
O20—C26 1.38 (3) C31—C32 1.44 (3)
O20—C31 1.45 (3) C33—C34 1.53 (3)
O21—C32 1.39 (3) C35—C36 1.53 (3)
O21—C33 1.45 (2) C37—C38 1.52 (3)
O22—C34 1.42 (3) C6—H6 0.93
O22—C35 1.43 (3) C8—H8 0.93
O23—C36 1.44 (3) C11—H11 0.93
O23—C37 1.42 (3) C12—H12 0.93
O24—C25 1.37 (3) C13—H13 0.93
O24—C38 1.47 (3) C14—H14 0.93
N2—C5 1.38 (3) C16—H16 0.93
N2—C9 1.39 (3) C17—H17 0.93
N3—C10 1.36 (3) C18—H18 0.93
N3—C14 1.35 (3) C19—H19 0.93
N4—C15 1.38 (3) C27—H27 0.93
N4—C19 1.32 (3) C28—H28 0.93
C5—C6 1.43 (3) C30—H30 0.93
C5—C10 1.50 (3) C31—H31A 0.97
C6—C7 1.38 (3) C31—H31B 0.97
C7—C8 1.37 (3) C32—H32A 0.97
C8—C9 1.41 (3) C32—H32B 0.97
C9—C15 1.49 (3) C33—H33A 0.97
C10—C11 1.41 (3) C33—H33B 0.97
C11—C12 1.40 (3) C34—H34A 0.97
C12—C13 1.40 (3) C34—H34B 0.97
C13—C14 1.39 (3) C35—H35A 0.97
C15—C16 1.40 (3) C35—H35B 0.97
C16—C17 1.40 (3) C36—H36A 0.97
C17—C18 1.41 (3) C36—H36B 0.97
C18—C19 1.41 (3) C37—H37A 0.97
C25—C26 1.44 (3) C37—H37B 0.97
C25—C30 1.41 (3) C38—H38A 0.97
C26—C27 1.38 (3) C38—H38B 0.97
C27—C28 1.43 (3)
C7—O1—C29 132.4 (14) C11—C12—H12 120
C26—O20—C31 117.3 (16) C13—C12—H12 120
C32—O21—C33 115.2 (16) C12—C13—H13 121
C34—O22—C35 117.3 (16) C14—C13—H13 121
C36—O23—C37 117.4 (15) N3—C14—H14 118
C25—O24—C38 117.0 (16) C13—C14—H14 118
C5—N2—C9 114.7 (19) C15—C16—H16 120
C10—N3—C14 118.3 (19) C17—C16—H16 120
C15—N4—C19 117.9 (19) C16—C17—H17 120
N2—C5—C6 123 (2) C18—C17—H17 121
N2—C5—C10 117.8 (19) C17—C18—H18 121
C6—C5—C10 118.8 (19) C19—C18—H18 121
C5—C6—C7 119 (2) N4—C19—H19 118
O1—C7—C6 119.3 (19) C18—C19—H19 118
O1—C7—C8 121 (2) C26—C27—H27 120
C6—C7—C8 120 (2) C28—C27—H27 120
C7—C8—C9 119 (2) C27—C28—H28 120
N2—C9—C8 124 (2) C29—C28—H28 120
N2—C9—C15 117.8 (19) C25—C30—H30 120
C8—C9—C15 118 (2) C29—C30—H30 120
N3—C10—C5 117.7 (16) O20—C31—H31A 110
N3—C10—C11 121 (2) O20—C31—H31B 110
C5—C10—C11 120.8 (19) C32—C31—H31A 110
C10—C11—C12 119 (2) C32—C31—H31B 110
C11—C12—C13 119 (2) H31A—C31—H31B 108
C12—C13—C14 118 (2) O21—C32—H32A 108
N3—C14—C13 124 (2) O21—C32—H32B 108
N4—C15—C9 117.4 (18) C31—C32—H32A 108
N4—C15—C16 121.5 (18) C31—C32—H32B 108
C9—C15—C16 121.0 (18) H32A—C32—H32B 107
C15—C16—C17 119 (2) O21—C33—H33A 108
C16—C17—C18 119 (2) O21—C33—H33B 108
C17—C18—C19 118 (2) C34—C33—H33A 108
N4—C19—C18 124 (2) C34—C33—H33B 108
O24—C25—C26 114.2 (19) H33A—C33—H33B 107
O24—C25—C30 125.7 (19) O22—C34—H34A 108
C26—C25—C30 120 (2) O22—C34—H34B 108
O20—C26—C25 115.1 (19) C33—C34—H34A 108
O20—C26—C27 126 (2) C33—C34—H34B 108
C25—C26—C27 119 (2) H34A—C34—H34B 107
C26—C27—C28 120 (2) O22—C35—H35A 110
C27—C28—C29 120 (2) O22—C35—H35B 110
O1—C29—C28 117.6 (19) C36—C35—H35A 110
O1—C29—C30 121 (2) C36—C35—H35B 110
C28—C29—C30 121 (2) H35A—C35—H35B 108
C25—C30—C29 119 (2) O23—C36—H36A 109
O20—C31—C32 108.9 (18) O23—C36—H36B 109
O21—C32—C31 118.0 (18) C35—C36—H36A 109
O21—C33—C34 116.2 (17) C35—C36—H36B 109
O22—C34—C33 117.2 (19) H36A—C36—H36B 108
O22—C35—C36 107.7 (18) O23—C37—H37A 109
O23—C36—C35 112.1 (18) O23—C37—H37B 109
O23—C37—C38 113.7 (17) C38—C37—H37A 109
O24—C38—C37 107.6 (16) C38—C37—H37B 109
C5—C6—H6 120 H37A—C37—H37B 108
C7—C6—H6 120 O24—C38—H38A 110
C7—C8—H8 120 O24—C38—H38B 110
C9—C8—H8 120 C37—C38—H38A 110
C10—C11—H11 120 C37—C38—H38B 110
C12—C11—H11 120 H38A—C38—H38B 108

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: YA2062).

References

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  2. Chernyshev, V. V. & Schenk, H. (1998). Z. Kristallogr.213, 1–3.
  3. Chitta, R., Rogers, L. M., Wanklin, A., Karr, P. A., Kahol, P. K., Zandler, M. E. & D’Souza, F. (2004). Inorg. Chem.43, 6969–6978. [DOI] [PubMed]
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  6. Huber (2002). Software for G670 Imaging Plate Guinier Camera Version 4.3.16. Huber Diffraktionstechnik GmbH, Rimsting, Germany.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807064999/ya2062sup1.cif

e-64-0o225-sup1.cif (16.8KB, cif)

Rietveld powder data: contains datablocks I. DOI: 10.1107/S1600536807064999/ya2062Isup2.rtv

e-64-0o225-Isup2.rtv (289.7KB, rtv)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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