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. 2010 Jul 22;26(17):2153–2159. doi: 10.1093/bioinformatics/btq341

Table 3.

Automated assignments

Dataset Phosphopeptides
Phosphosites
Pass Fail Pass Fail
Orbitrap 1617 1992 557 252
Q-Star 2101 2521 939 456

Automated assignment to the dataset by the methodology described. A single verified site observation at any peptide rank which met the appropriate quality criteria was considered sufficient to call as a phosphosite.