Abstract
Markovian analysis is applied to derive nonlinear stochastic equations for the reconstruction of heart rate and respiration rate variability data. A model of their phase interactions is obtained for the first time, thereby gaining new insights into the strength and direction of the cardiorespiratory phase coupling. The reconstructed model can reproduce synchronization phenomena between the cardiac and respiratory systems, including switches in synchronization ratio. The technique is equally applicable to the extraction of the multi-dimensional couplings between many interacting subsystems.
1 Introduction
Biological oscillators are found at every level of complexity, and for almost every living system [1]. Oscillations arise through the interaction of many dynamical degrees of freedom and processes with different time scales [2]. Oscillatory signals from the human cardiovascular system (CVS) have been analysed over several decades because they appear to contain so much clinically relevant information. For diagnostic purposes, however, it seems still to be the case that only classical time-series analysis methods are being applied [3]. As each new technique of time-series analysis has emerged with the development of nonlinear and stochastic dynamics, it was challenged by application to CVS data and, in particular, to the analysis of cardio-respiratory interactions. Heart rate variability (HRV) has attracted particular attention, whereas respiratory rate variability (RRV) has been less studied. Several additional oscillatory processes were also shown to be involved in cardiovascular interactions, e.g. the myogenic, neurogenic, and endothelial-related metabolic activities [4]. The underlying dynamics is complex, nonlinear, time-varying, and subject to fluctuations [5, 6, 7], so that no single time-series analysis method can be expected to reveal all relevant properties. It must therefore be insufficient for diagnosis of many pathological states.
Because of the complexity, a parametric model of the cardiovascular system is essential. Once it has been constructed, its parameters (e.g. amplitudes, phases and coupling coefficients) could characterise the state of the subject and thus be used both for earlier diagnosis of CVS disease and for assessing the efficacy of treatment. Cardio-respiratory interactions have been modelled from first principles (see [8] and references therein). Yet, because the system is so complex and present physiological knowledge is still insufficient [9], this group of models is of limited utility and often not realistic. Moreover, it was mainly amplitude dynamics that was considered. Because time-series data are now easily measured and widely available, the inverse approach based on recorded data seems more promising. However, very few techniques are available for modelling nonlinear and stochastic dynamics. The recently introduced Bayesian inference technique [10, 11], or a Markov approach [12], may provide the solution to this as yet unsolved problem. The inference technique has already been applied to the amplitude dynamics of the cardio-respiratory interaction, whereas the Markov approach has not yet been applied to the problem. Coupled oscillators interact both through their amplitudes and phases. There is a crucial distinction between phase and amplitude investigations in that small perturbations have a huge impact on the phase, but only a very small effect on the amplitude. Analysis of phase dynamics has recently been used to reveal synchronization properties [13, 14, 15], nonlinearities [16], and the directionality of the inter-oscillator interactions [17, 18, 19]. Both HRV and RRV have so far been used only in synchronization or directionality analysis and no known modelling attempts have been made to date.
The heart is the main pump in the CVS. The latter consists of a large network of vessels that can be regarded as resistances or conductances. The ultimate goal of the circulation is to supply all cells with O2 and nutrients. So optimal control of the amount of blood, and thus of O2 and nutrients, is needed. This is performed by controlling the cardiac frequency and the stroke volume, the amount of blood expelled by the heart in each cycle. The cardiac frequency and stroke volume adapt to variations in the conductance of the vascular network. In addition, the conductances are regulated by local mechanisms such as the endothelial, neurogenic and myogenic activities. The other generator in the network is the respiratory system, which not only takes care of the O2 but also modulates the heart rate and stroke volume. The respiratory modulation of the heart rate has long been known as respiratory sinus arrythmia (RSA) [20, 21], while the other mechanisms are presently the subject of intensive research [7, 22, 23, 24].
In fact it is cardiac output, the product of heart rate and stroke volume, that is regulated. While the stroke volume is rather constant, the heart rate varies to take account of the needs of the body. It is also well known that the respiratory frequency changes significantly when the system is perturbed, e.g. during anæsthesia [25], or in diabetes [24]. Frequency dynamics is therefore a powerful, objective and noninvasive tool to explore the dynamics of the system and can in principle improve our understanding of the physiology and the health of a subject.
In this paper we apply the theory of multidimensional Markovian processes to cardio-respiratory data for the first time, analyse HRV and RRV data simultaneously, and model cardio-respiratory phase interactions. Mathematical modelling of system dynamics is combined with the extraction of model parameters directly from measured time series. We analyzed recordings of cardiac and respiratory activity from healthy volunteers in repose using, respectively, a 3-lead ECG system and piezoresistive sensor attached to a belt around the thorax. The measurements were non-invasive and of length 30 minutes (10 subjects) or 80 minutes (8 subjects). The instantaneous frequencies of the cardiac and respiratory oscillations (HRV and RRV) were extracted using the marked events method [26]. For the first time, we reconstruct a model by simultaneous consideration of the phase dynamics of the cardiac and respiratory oscillations.
2 The mathematics of Markov processes
The theory of multidimensional Markovian processes [27] was applied to the data as follows. Consider the two-dimensional stochastic variable
| (1) |
where , i = h, r, fh and fr are the instantaneous heart (HRV) and respiratory (RRV) frequencies, and are their averages, and σh and σr are the HRV and RRV variances. The stochastic process underlying the evolution of q during the time t is Markovian if the conditional probability density function (pdf) P (q(t1)|q(t2), q(t3), …, q(tN)) with tN ≤ tN−1 ≤ … ≤ t1 for a certain time interval tM = t2 − t1, fulfills the relation P( q(t1) | q(t2), q(t3), …, q(tN) ) = P( q(t1) | q(t2). For Markov processes, the evolution of the conditional pdf can be described by the Kramers-Moyal expansion which, by Pawula’s theorem, truncates after the second term if the fourth order expansion coefficient vanishes. In this case, the Kramers-Moyal expansion reduces to a Fokker-Planck equation [27]. Alternatively, the stochastic process underlying the evolution of q can be described by the Langevin equation for q(t):
| (2) |
The components of Γ(t) represent the stochastic influences acting on the process. In this case, the functions f(q, t) and g(q, t) can be calculated from the drift vector D(1) and the diffusion matrix D(2). In Stratanovich’s stochastic calculus, f(q, t) and g(q, t) are given by
| (3) |
where the drift vector D(1) and the diffusion matrix D(2) are defined as
| (4) |
Here are conditional expectation values that can easily be determined from experimental data. Moreover, is to be calculated by diagonalizing the matrix D(2), taking the square root of each element of the diagonalized matrix and transforming the result back into the original system of coordinates. We have used a data analysis technique that yields estimates for drift and diffusion functions of Markov diffusion processes [28]. Accordingly, drift and diffusion functions are given in terms of truncated function series with expansion parameters computed from experimental data. Note that the conditional averages D1 and D2 are not necessarily continuously differentiable functions with respect to t. Therefore, it is important to note that the derivatives correspond to derivatives from above. In this case, we have used a procedure which is discussed in detail in a paper by Frank et. al [28]. Accordingly, the phase space is decomposed into bins. This decomposition of the phase space into bins suggests that we may usefully decompose D1 and D2 in a similar way. After that, the drift and diffusion functions expressed as polynomials of . This step-wise decomposition of drift and diffusion coefficients has been successfully applied in a number of cases [29, 30, 31, 32, 33, 34]. We comment, however, that this step-wise decomposition introduces an inaccuracy of O(Δfi, Δt) where Δfi is the resolution of fi and 1/Δt is sampling frequency[28]. The Langevin equation offers an alternative way of checking the Markovian properties of a stochastic variable. The idea [30] is to estimate the coefficients D(1) and D(2) from experimental data according to (4), and to calculate f and g using (3); the Langevin equation (2) can then be used to extract Γ(t) from the (measured) derivatives of the qi(t). If the realizations of the stochastic force obtained by this method are δ-correlated with zero mean and a Gaussian distribution, the Markov condition is fulfilled. We use this method here because, for multidimensional stochastic variables, it is hardly possible to check the Markov condition directly by means of multiconditional pdfs. Also the numerical cost for the estimation of the coefficients D(k) of order three and higher grows considerably with the order k (growth α 2k).
3 Inferred Model
We now apply the above method to the fluctuations in HRV and RRV. Using (4) directly, we calculate the drift and diffusion coefficients, and . We start with the HRV component of the drift vector. Using experimental data, it will be shown that the dependence of on can to a good approximation be described by a straight line, as . Although we have a first order dependence (with small scatter) for a with different values of , the b-component of the drift vector shows a second-order dependence on the (Fig. 1). The second-order coefficient is almost constant, for example in Fig. 2 is shown as a function of , which shows no clear functional dependence on . Before we proceed with the -components of the drift vector and diffusion matrix, note that fluctuates approximately around zero (Fig. 2). We take this as evidence that the mixed coefficient vanishes. Given that these off-diagonal elements vanish, the functions in (2) can easily be calculated according to equation (3) and g is then simply given by:
| (5) |
From the results obtained so far the Langevin-equation (2) for takes the form:
| (6) |
It can already be used to extract the h–component Γh(t) of the stochastic force from measured realizations of , , and . The stochastic process governing the t–evolution of the stochastic variable q(t) is Markovian, if the stochastic force Γ is δ–correlated. As can be seen in Fig. 3, the correlation function of the stochastic force Γh(t) fluctuates around zero, clearly indicating that the Markovian properties are fulfilled, in agreement with [35] which for healthy subjects the Markov length scale is less than 5 steps. To complete the description by Markov analysis, we still have to determine the coefficients and . turns out to be a linear function of the and does not depend explicitly on , and the coefficient turns out to be a second order function of just . Hence
| (7) |
and for the Langevin-equation (2) takes the form:
| (8) |
Figure 1.
Plots of a and b as functions of in the drift coefficient of HRV, , derived from the HRV and RRV signals of Subject 1. The average and variance of their HRV were = 1.21 Hz and σh = 0.18 Hz respectively; for RRV, the average and variance were = 0.237 Hz and σr = 0.025 Hz.
Figure 2.
The hh-component of the diffusion matrix (top) related to Subject 1 in the same domain of frequency of the drift coefficient. The hr-component of the diffusion matrix (bottom) for Subject 1 as a function of for (gradient), (squares) and (triangle). The coefficient shows fluctuations around zero.
Figure 3.
The correlation function of the -component of the stochastic force Γ(t)(top) and its pdf (bottom) fitted by a Gaussian function.
For other data measured from different subjects, we expect the functional dependence of drift coefficients and diffusion matrices to be the same, but with different numerical coefficients (cf. Table 1). The dynamics of and is as shown in Fig. 4, and the average values can be seen to be close to those in Table. 1 obtained from the whole signals. The functionality of the coefficients obtained indicates that the frequency of respiration influences the cardiac frequency strongly, whereas the influence is very small in the opposite direction, consistent with the results of methods specifically developed for detecting the coupling directionality of interacting phases [18, 19], and with direct physiological observations.
Table 1.
The drift coefficients and diagonal components of the diffusion Matrix for 5 out of 18 subjects (the first 3 are 30 minute and the rest are 80 minute)
| Subject | ||
|---|---|---|
|
| ||
| 1 | 0.15 | |
| 2 | 0.21 | |
| 3 | ||
| 4 | 0.02 | |
| 5 | 0.15 | |
| Subject | ||
|---|---|---|
|
| ||
| 1 | ||
| 2 | ||
| 3 | ||
| 4 | ||
| 5 | ||
Figure 4.

Dynamics of the parameters in the drift coefficients, and components of the diffusion matrix for subject 4 (80 minutes) obtained using a 30-minute window slid in 7-minute increments. The average values of a1 and (inset) are equal to −0.032 and 0.025, respectively. They are clearly close to the values of Table 1, which were obtained by analysis of the full data set.
Table 1 shows that the values of the drift and diffusion coefficients vary considerably from one subject to another. One possible explanation is that we have a wide range of ages (from 22 to 72 yr) and that the drift and diffusion coefficients are age-dependent. Moreover, although, we have divided all the signals by their variances, there is still a large inter-subject variability which is probably attributable to from the differing natures and histories of the subjects. Nevertheless, for all subjects the drift and diffusion coefficients for respiration, as well as the diffusion coefficients for heart, do not vary by very much. The situation is more complicated in the case of the drift coefficient of the heart. This may suggest that the heart interacts with many more sources of variability than just with respiration.
4 Validation - synchronization analysis
We now have two equations related to HRV and RRV. To check the accuracy of estimation we have analyzed and compared the synchronization behavior of the original and reconstructed pairs of signals. The results are shown in Fig. 5 and 6. In Fig. 5 the reconstructed signals related to HRV and RRV have been plotted versus the original (labelled as “Real” in the figures) signals.
Figure 5.
Comparison of the actual and reconstructed signals for and .
Figure 6.
Episodes of synchronization derived: A from the original signals; B after shuffling of the original signals; C from the reconstructed signals; and D after shuffling of the reconstructed signals. It is evident from B and D that, even after shuffling, short epochs above threshold still occurred, albeit for durations of no more than ~25 seconds. Hence, when analyzing the original data, only those epochs that exceeded 25 seconds were considered as indicative of true synchronization.
Classically, synchronization of two periodic nonidentical oscillators is understood as an adjustment of their rhythms, or locking of their phases, φn,m = nφ1 – mφ2 = const, where φ1 and φ2 are phases, n and m are integers, and φn,m is the generalized phase difference, or relative phase. For noisy, chaotic systems and/or systems with modulated natural frequencies a weaker condition of phase synchronization, |φn,m| = |nφ1 – mφ2 – δ| < const, where δ is some (average) phase shift, was introduced [36, 37, 38, 39]. Accordingly, synchronization is then understood as the appearance of peaks in the distribution of cyclic relative phase ψn,m = φn,m mod 2π and interpreted as the existence of a preferred stable value of phase difference between two oscillators. In such a case, the n:m phase locking is manifested as a time variation of n,m around a horizontal plateau.
In analyzing synchronization, the integers n and m should both be determined. In the case of two interacting noisy oscillatory processes, n and m change in time. One possibility, known as the phase stroboscope, or synchrogram, is to fix the value of m and observe changes of n in time [40]. Accordingly, the cardiorespiratory synchrogram is constructed by plotting the normalized relative phase of a heartbeat within m respiratory cycles, , where tk is the time of kth heartbeat and φ2 is the instantaneous phase of respiration. We calculated the normalized relative phase, ψm, directly from the measured data, exploiting the fact that both signals contain sharp peaks that clearly mark the instantaneous cycles. Each successive peak was marked as an equivalence of one oscillatory cycle, corresponding to which a 2π increment was added. The instantaneous phase is then
| (9) |
where tk is time of kth marker event. Defined in this way the phase is a monotonically increasing piecewise-linear function of time defined on the real line. Usually, the first step in searching an n:m locking is look for horizontal plateaus in ψm, revealing the value of n in cases when synchronization exists. The distribution of ψn,m is then a δ function, smeared in the presence of noise. For strongly nonlinear oscillators it can be nonuniform even in the absence of noise [41]. To characterize the strength of synchronization we therefore need a robust quantitative measure. Since in noisy systems phase synchronization can be understood in a statistical sense as the existence of preferred values of the generalized phase difference, measures based on quantifying the distribution of phases
| (10) |
were proposed. We will use an index based on conditional probability which was introduced in [39] and was shown to facilitate reliable detection of synchronous epochs of different order n:m [42]. Accordingly, the phase of the second oscillator is observed at fixed values of the phase of the first oscillator,. The interval of each phase φ1 and φ2, [0, 2πm) and [0, 2πn), respectively, is divided into N bins. The values of φ1 mod 2πm that belong to bin l are denoted as θl, while the number of points inside this bin is denoted as Ml, and, by using Eq. (10), Ml values of ηj,l, j = 1, …, Ml, are calculated. If there is no synchronization between the oscillators, a uniform distribution of ηj,l can be expected on the interval [0, 2πn), or else it clusters around a certain value resulting in a unimodal distribution. Hence, the distribution is quantified as
| (11) |
for each j when φ1(tj) belongs to the lth bin and tk –tp/2 ≤ tj < tk +tp/2. Ml(tk) is the number of points in this bin at the kth instant. An average over ~8 periods, tp, of the slower oscillator was used. Where the phases are completely locked, or completely unlocked we obtain |rl(tk)| = 1 or |rl(tk)| = 0, respectively. To improve reliability, we also calculate the average over all bins and obtain the index of synchronization .
Accordingly, λn,m is a measure of the conditional probability that φ2 has a certain value within the lth bin when φ1 belongs to this bin. Synchronization can occur in several regimes, switching from one index to another with time. The indices used must be found by trial and error, although a good indication of where the regimes occur can be obtained from the frequency ratio of the two oscillators. A frequency ratio of would suggest m:n indices of 1:4. As we mentioned before, perfect synchronization appears when the value of the index = 1, and is zero when there is no synchronization. However, in a noisy system such as the CVS, perfect synchronization is rarely seen. Hence a high index value close to 1 is used as an indication of synchronization. For the present investigation, values above 0.9 were taken to validate evidence of possible synchronization seen in the synchrograms.
Also, there is the problem of apparent synchronization that occurs by pure coincidence. As a test, shuffled data was created from pairs of HRV and RRV signals, as well as from the reconstructed ones: in the shuffling process, these data were randomized in such a way that no real synchronization could exist. It was found that short epochs above the threshold did indeed occur occasionally, but that they lasted no more than ~25 seconds in length, as illustrated in Figs. 6(B)and (D). Hence, only epochs exceeding 25 seconds were considered as representing true synchronization. Using these two criteria it was possible to give a picture of likely synchronization regimes. The synchronization indices show that, instead of there being long episodes of n:m synchronization with constant n and m, the cardiorespiratory interaction switches in time between several close ratios. This switching could either be representative of the onset of chaos or just an indication that there are other oscillatory components on slower time scales that perturb the pattern of synchronization almost periodically.
Fig. 6 shows that these results demonstrate convincingly that the nonlinear Langevin equations derived from experimental data provide a valid description of cardiorespiratory dynamics. These results reveal another important aspect of applying a Markov approach to the cardiorespiratory interaction. Fig. 6 illustrates transitions between the 2:11 and 1:5 synchronization states. They are thought to arise from interactions between the different oscillatory components in the cardiorespiratory signals. Fig. 6 shows the correctness of this idea. Synchronization episodes derived from two Langevin equations show almost the same transitions between synchronization states. The small differences between the original and reconstructed graph may be related to the effect of other oscillatory components, e.g. the myogenic, neurogenic, or endothelial-related metabolic activities [7], which have not been considered here. We also comment that, to make a prediction for the future of the signal we could select a few (say 3) consecutive points in the experimental series and search for the three consecutive points in the reconstructed series, derived from Langevin equations, that differ least from the selected points. Note that the better the estimations of drift and diffusion and the longer the time series (better statistics), the better and more complete the reconstruction that can be expected. If the process were exactly Markovian then we could use these Langevin equations to predict any quantity involved in the problem. In reality, of course, all of the discussion relates to Markovianicity within some range of accuracy.
5 Discussion and conclusion
Like the Bayesian inference method [10], the Markovian approach can in principle be applied to any signals, including multi-dimensional ones arising from complex interactions between many subsystems. The two methods differ radically, however, in that the former is an analytical extension of the generalized least squares method, whereas the latter is based on the analytical information of the Markov processes. The method proposed here is in some ways similar to that discussed in the paper by Frank et all [28] which describes model identification from trajectory measurements in nonlinear stochastic equation with state-dependent (multiplicative) white noise. The drift h(x) and diffusion D(x) coefficients as functions of a state variable x ( and in the present paper) are obtained using definitions following from the Fokker Planck equation, i.e. as conditional averages involving first and second moments of the system trajectory displacement from the point x during an infinitesimal time interval. The method presented in the paper by Frank et al gives asymptotically correct values for h(x) and D(x) in the limit of an infinitely large number of measurements, but it may not provide a very accurate statistical analysis of the problem for a limited .
Where the number of observations is relatively small, certain regions of the state variable x (corresponding to the tails of the probability distribution of x in the dynamical problem) may contain only a few data points. In such cases, discretization with a constant bin size is not the optimal approach. Correct analysis requires one to choose a bin size adaptively for different regions of x, depending on the particular observations, with wider bins where there are fewer dat points. Alternatively, it is possible to completely avoid binning of the configuration space by introduction of a posterior distribution of model parameters conditioned on the measured trajectory points. This approach, introduced in a recent paper by Smelyanskiy et al [10], is based on a path integral representation of the stochastic process and a functional series expansion of the empirically chosen basis functions in the dynamical model. As mentioned above this approach avoids binning of the measured trajectory points and computes directly a posterior distribution of the unknown model parameters with computational complexity equal to that in Frank et al. On the other hand, it may not always be easy to guess a priori which type of the model and how many different basis functions will be appropriate. Nevertheless, with suitable initial, inference method should gives accurate results even for short time series.
In summary, the model reconstructed by the Markovian approach reproduces the coupling directionality, strength, and phase dynamics of the cardiac and respiratory oscillations and their interactions. The fundamental time scale in the approach is the Markov time scale, which is the minimum time interval over which the series can be considered as constituting a Markov process. Based on the estimates of the Kramers–Moyal coefficients for the series, it was shown that the fourth-order coefficient is very small, implying that the Kramers-Moyal expansion reduces to a Fokker-Planck equation which, in turn, is equivalent to a Langevin equation. Thus, the probability densities of the fluctuations satisfy a Fokker-Planck equation. It is characterized by drift and diffusion coefficients, representing the first two coefficients in the Kramers-Moyal expansion. We computed accurate approximants for the coefficients of the stochastic time series by using the polynomial ansatz. We then constructed two simple Langevin equations governing the time series. The resulting equations are capable of providing a rational explanation for complex features of the series. Moreover, it requires no scaling feature. Our approach also reveals in detail the statistical properties of the data, which can help one to check the biological modelling rather precisely.
6 Acknowledgment
The authors would like to thank V. N. Smelyanskiy for a very useful discussion. This work was supported by the Wellcome Trust and by the FP6 EU NEST-Pathfinder project “BRACCIA”.
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