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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2007 Dec 6;64(Pt 1):m45. doi: 10.1107/S1600536807063386

Substitutional disorder in a hypervalent diorganotin(IV) dihalide

Adina Rotar a, Richard A Varga a,*, Cristian Silvestru a
PMCID: PMC2947775  PMID: 21200616

Abstract

The structure of bromidochloridobis[2-(dimethyl­amino­meth­yl)phen­yl]tin(IV), [SnBr0.65Cl1.35(C9H12N)2], contains two 2-(Me2NCH2)C6H4 units bonded to a Sn atom which lies on a twofold axis. The compound exhibits substitutional disorder of the halide atoms bonded to the Sn, with 1.35 occupancy for Cl and 0.65 for Br; it is isomorphous with the corresponding dichloride. The Sn atom is hexa­coordinated with a (C,N)2SnX 2 (X = Cl/Br) distorted octa­hedral core as a result of the strong intra­molecular N→Sn coordination trans to the Sn—X bonds (N1—Sn1—X1 = 165.8°). As a result of the inter­molecular contacts, viz. H⋯X and H⋯benzene inter­actions, the mol­ecules are arranged in a three-dimensional supra­molecular manner in the crystal structure.

Related literature

For related literature see Varga et al. (2001, 2005, 2006, 2007); Rotar et al. (2007); Emsley (1994); IUPAC (1979).graphic file with name e-64-00m45-scheme1.jpg

Experimental

Crystal data

  • [SnBr0.65Cl1.35(C9H12N)2]

  • M r = 486.89

  • Monoclinic, Inline graphic

  • a = 17.0221 (15) Å

  • b = 8.2387 (7) Å

  • c = 14.7510 (13) Å

  • β = 106.1050 (10)°

  • V = 1987.5 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 2.78 mm−1

  • T = 297 (2) K

  • 0.32 × 0.25 × 0.11 mm

Data collection

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SAINT-Plus; Bruker, 2000) T min = 0.452, T max = 0.738

  • 6916 measured reflections

  • 1746 independent reflections

  • 1693 reflections with I > 2σ(I)

  • R int = 0.035

Refinement

  • R[F 2 > 2σ(F 2)] = 0.027

  • wR(F 2) = 0.060

  • S = 1.24

  • 1746 reflections

  • 108 parameters

  • H-atom parameters constrained

  • Δρmax = 0.36 e Å−3

  • Δρmin = −0.47 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT-Plus (Bruker, 2000); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Bruker, 2001); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2007).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807063386/gd2029sup1.cif

e-64-00m45-sup1.cif (15.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063386/gd2029Isup2.hkl

e-64-00m45-Isup2.hkl (86.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C3—H3⋯Cg1ii 0.93 3.19 3.78 (1) 123
C4—H4⋯Cl1ii/Br1ii 0.93 2.87 3.798 (5) 173
C6—H6⋯Cl1iii/Br1iii 0.93 3.02 3.710 (3) 132

Symmetry code: (ii) Inline graphic, Inline graphic, Inline graphic, (iii) Inline graphic, Inline graphic, Inline graphic. Cg1 is the centroid of the benzene ring C1–C6.

Acknowledgments

Financial support from the National University Research Council (CEEX 63/2006) is greatly appreciated. We also thank the National Center for X-Ray Diffraction, Cluj-Napoca, for help with the solid-state structure determination.

supplementary crystallographic information

Comment

During our work on hypervalent organotin(IV) compounds with the [2-(Me2NCH2)C6H4]Sn fragment (Varga et al., 2001, 2005, 2006, 2007, Rotar et al. 2007), the title compound (I) was isolated. It contains two 2-(Me2NCH2)C6H4 units bonded to a tin atom which lies on a twofold axis of the space group C2/c. The compound exhibits substitutional disorder of both halide atoms bonded to the Sn with chlorine being the major (1.35) and the bromine the minor (0.65) component.

The structure of [2-(Me2NCH2)C6H4]2SnCl2 was also determined (Varga et al., 2001) and is isomorphous with the title compound. Both have space group C2/c; the cell constants as well as the volume differ slightly (0.39% increase for the title compound) as the result of the presence of a different halide in the molecular unit.

The molecules of the compound feature a metal atom strongly coordinated by two nitrogen atoms of the pendant arms [Sn—N1 = 2.64 (1) Å; the Sn—N distance exceeds the sum of the covalent radii for the corresponding atoms, Σcov(Sn,N) = 2.1 Å (Emsley, 1994)] trans to an Sn–halogen bond (N1—Sn1—X1 = 165.8°). This results in a (C,N)2SnX2 (X = Cl/Br) core in the title compound with a trans-SnC2 fragment, while the N and X atoms are cis positions (Fig. 1). The octahedral geometry around the Sn atom is distorted from the ideal geometry as a consequence of the small 'bite' of the pendant arm ligand [C1—Sn1—N1 = 71.4°] and the steric repulsion between the organic groups bonded to the Sn atoms. All these features are similar to the corresponding dichloride.

As a result of the intramolecular coordination of the nitrogen to the tin atom a five-membered SnC3N ring is formed. This ring is not planar but is folded along the Sn(1)···Cmethylene axis with the N atom out of the best plane defined by the residual SnC3, thus inducing planar chirality, with the phenyl ring as chiral plane and the nitrogen as pilot atom (IUPAC, 1979). Indeed, the compound crystallizes as a racemate, i.e. a mixture of RN1RN1i and SN1SN1i [symmetry code: (i) 2 - x, y, 0.5 - z].

In the crystal of the title compound intermolecular interactions, i.e. hydrogen bond type interactions and H···phenyl interactions (Fig. 2), give rise to a supramolecular array. If only chlorine is considered than layers are built of the same type of isomer [H4···X1ii = 2.87 Å, H3···Cg1ii = 3.19 Å; symmetry code: (ii) -1/2 + x, 1/2 + y, z] along the ab plane (Fig. 3). If bromine is taken into account, than alternating parallel layers of RN1RN1i and SN1SN1i isomers are bridged through weak H6···X1iii [3.02 Å; symmetry code: (iii) 2 - x, 1 - y, 1 - z] interactions resulting in a three-dimensional supramolecular architecture (Fig. 4).

Experimental

The title compound was isolated as a by-product of the reaction between [2-(Me2NCH2)C6H4]SnCl2 and [2,6-(Me)2C6H3]MgBr, due to partial halide exchange.

Refinement

All hydrogen atoms were placed in calculated positions using a riding model, with C—H = 0.93–0.97 Å and with Uiso= 1.5Ueq (C) for methyl H and Uiso= 1.2Ueq (C) for aryl H. The methyl groups were allowed to rotate but not to tip. The two halide atoms were refined as substitutional disorder between chlorine and bromine, with 1.35 occupancy for Cl and 0.65 occupancy for Br.

Figures

Fig. 1.

Fig. 1.

: A view of title compound showing the atom-numbering scheme at 30% probability thermal ellipsoids for (RN,RNi)-(I) isomer [symmetry code: (i) 2 - x, y, 0.5 - z]. H atoms are drawn as spheres of arbitrary radii.

Fig. 2.

Fig. 2.

: Intermolecular interactions [shown as dashed lines, black for H···X (X = Cl/Br), red for H···phenyl]. Only H involved in interactions are showed. Symmetry codes: (i) 2 - x, y, 0.5 - z, (ii) -1/2 + x, 1/2 + y, z, (iii) 2 - x, 1 - y, 1 - z.

Fig. 3.

Fig. 3.

: View of the two-dimensional layer formed through H···X and H···phenyl interactions along c axis. Only H involved in interactions are showed.

Fig. 4.

Fig. 4.

: Crystal packing showing the three-dimensional supramolecular architecture along a axis. Only H involved in interactions are showed.

Crystal data

[SnBr0.65Cl1.35(C9H12N)2] F000 = 966.8
Mr = 486.89 Dx = 1.627 Mg m3
Monoclinic, C2/c Mo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 3754 reflections
a = 17.0221 (15) Å θ = 2.5–26.9º
b = 8.2387 (7) Å µ = 2.78 mm1
c = 14.7510 (13) Å T = 297 (2) K
β = 106.1050 (10)º Block, colourless
V = 1987.5 (3) Å3 0.32 × 0.25 × 0.11 mm
Z = 4

Data collection

Bruker Smart APEX CCD area-detector diffractometer 1746 independent reflections
Radiation source: fine-focus sealed tube 1693 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.035
T = 297(2) K θmax = 25.0º
phi and ω scans θmin = 2.5º
Absorption correction: multi-scan(SAINT-Plus; Bruker, 2000) h = −19→20
Tmin = 0.452, Tmax = 0.738 k = −9→9
6916 measured reflections l = −17→17

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027 H-atom parameters constrained
wR(F2) = 0.060   w = 1/[σ2(Fo2) + (0.P)2 + 3.2594P] where P = (Fo2 + 2Fc2)/3
S = 1.24 (Δ/σ)max = 0.001
1746 reflections Δρmax = 0.36 e Å3
108 parameters Δρmin = −0.46 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
Br1 1.04832 (5) 0.42622 (9) 0.36987 (5) 0.0721 (3) 0.325 (3)
Cl1 1.04832 (5) 0.42622 (9) 0.36987 (5) 0.0721 (3) 0.675 (3)
Sn1 1.0000 0.64336 (4) 0.2500 0.03453 (12)
C1 0.89182 (18) 0.7072 (4) 0.2862 (2) 0.0386 (7)
C6 0.8831 (2) 0.6785 (4) 0.3757 (2) 0.0455 (8)
H6 0.9254 0.6293 0.4212 0.055*
C2 0.8274 (2) 0.7761 (5) 0.2181 (3) 0.0517 (9)
C5 0.8125 (2) 0.7221 (5) 0.3982 (3) 0.0589 (10)
H5 0.8072 0.7022 0.4583 0.071*
C4 0.7506 (3) 0.7942 (6) 0.3318 (3) 0.0714 (12)
H4 0.7035 0.8260 0.3472 0.086*
C3 0.7572 (2) 0.8206 (6) 0.2424 (3) 0.0707 (12)
H3 0.7141 0.8688 0.1975 0.085*
N1 0.91474 (19) 0.8322 (4) 0.1136 (2) 0.0547 (8)
C7 0.8321 (2) 0.7923 (6) 0.1177 (3) 0.0653 (11)
H7A 0.8150 0.6911 0.0845 0.078*
H7B 0.7947 0.8766 0.0860 0.078*
C8 0.9324 (3) 1.0031 (5) 0.1373 (3) 0.0785 (13)
H8A 0.8954 1.0700 0.0915 0.118*
H8B 0.9876 1.0269 0.1371 0.118*
H8C 0.9259 1.0246 0.1987 0.118*
C9 0.9204 (3) 0.8054 (7) 0.0157 (3) 0.0838 (15)
H9A 0.8810 0.8724 −0.0273 0.126*
H9B 0.9096 0.6934 −0.0012 0.126*
H9C 0.9744 0.8331 0.0124 0.126*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.0787 (5) 0.0714 (5) 0.0805 (6) 0.0373 (4) 0.0458 (4) 0.0378 (4)
Cl1 0.0787 (5) 0.0714 (5) 0.0805 (6) 0.0373 (4) 0.0458 (4) 0.0378 (4)
Sn1 0.03419 (18) 0.03473 (18) 0.04017 (19) 0.000 0.01949 (13) 0.000
C1 0.0344 (16) 0.0371 (17) 0.0486 (19) 0.0027 (13) 0.0187 (15) −0.0014 (14)
C6 0.0446 (19) 0.048 (2) 0.050 (2) 0.0021 (15) 0.0240 (16) −0.0028 (16)
C2 0.0413 (19) 0.061 (2) 0.056 (2) 0.0070 (17) 0.0187 (17) 0.0090 (18)
C5 0.058 (2) 0.068 (3) 0.063 (2) 0.003 (2) 0.036 (2) −0.002 (2)
C4 0.052 (2) 0.084 (3) 0.093 (3) 0.015 (2) 0.045 (2) 0.002 (3)
C3 0.044 (2) 0.082 (3) 0.089 (3) 0.018 (2) 0.023 (2) 0.013 (2)
N1 0.0518 (18) 0.068 (2) 0.0470 (17) 0.0091 (15) 0.0181 (14) 0.0161 (15)
C7 0.045 (2) 0.088 (3) 0.059 (2) 0.009 (2) 0.0076 (18) 0.019 (2)
C8 0.090 (3) 0.062 (3) 0.085 (3) 0.004 (2) 0.026 (3) 0.022 (2)
C9 0.084 (3) 0.121 (4) 0.050 (2) 0.019 (3) 0.024 (2) 0.030 (3)

Geometric parameters (Å, °)

Br1—Sn1 2.4893 (7) C4—H4 0.9300
Sn1—C1 2.121 (3) C3—H3 0.9300
Sn1—C1i 2.121 (3) N1—C7 1.462 (5)
Sn1—Cl1i 2.4893 (7) N1—C8 1.462 (5)
Sn1—Br1i 2.4893 (7) N1—C9 1.491 (5)
C1—C2 1.387 (5) C7—H7A 0.9700
C1—C6 1.389 (5) C7—H7B 0.9700
C6—C5 1.380 (5) C8—H8A 0.9600
C6—H6 0.9300 C8—H8B 0.9600
C2—C3 1.389 (5) C8—H8C 0.9600
C2—C7 1.510 (5) C9—H9A 0.9600
C5—C4 1.360 (6) C9—H9B 0.9600
C5—H5 0.9300 C9—H9C 0.9600
C4—C3 1.372 (6)
C1—Sn1—C1i 151.30 (17) C4—C3—C2 120.8 (4)
C1—Sn1—Cl1i 102.61 (9) C4—C3—H3 119.6
C1i—Sn1—Cl1i 97.93 (9) C2—C3—H3 119.6
C1—Sn1—Br1i 102.61 (9) C7—N1—C8 110.1 (3)
C1i—Sn1—Br1i 97.93 (9) C7—N1—C9 109.2 (3)
Cl1i—Sn1—Br1i 0.00 (4) C8—N1—C9 108.0 (3)
C1—Sn1—Br1 97.93 (9) N1—C7—C2 112.0 (3)
C1i—Sn1—Br1 102.61 (9) N1—C7—H7A 109.2
Cl1i—Sn1—Br1 88.11 (4) C2—C7—H7A 109.2
Br1i—Sn1—Br1 88.11 (4) N1—C7—H7B 109.2
C2—C1—C6 119.2 (3) C2—C7—H7B 109.2
C2—C1—Sn1 119.1 (2) H7A—C7—H7B 107.9
C6—C1—Sn1 121.8 (2) N1—C8—H8A 109.5
C5—C6—C1 120.9 (3) N1—C8—H8B 109.5
C5—C6—H6 119.6 H8A—C8—H8B 109.5
C1—C6—H6 119.6 N1—C8—H8C 109.5
C1—C2—C3 119.0 (4) H8A—C8—H8C 109.5
C1—C2—C7 120.0 (3) H8B—C8—H8C 109.5
C3—C2—C7 120.9 (3) N1—C9—H9A 109.5
C4—C5—C6 119.6 (4) N1—C9—H9B 109.5
C4—C5—H5 120.2 H9A—C9—H9B 109.5
C6—C5—H5 120.2 N1—C9—H9C 109.5
C5—C4—C3 120.5 (4) H9A—C9—H9C 109.5
C5—C4—H4 119.7 H9B—C9—H9C 109.5
C3—C4—H4 119.7
C1i—Sn1—C1—C2 70.1 (3) C6—C1—C2—C7 −173.7 (4)
Cl1i—Sn1—C1—C2 −64.6 (3) Sn1—C1—C2—C7 4.9 (5)
Br1i—Sn1—C1—C2 −64.6 (3) C1—C6—C5—C4 −0.1 (6)
Br1—Sn1—C1—C2 −154.4 (3) C6—C5—C4—C3 1.5 (7)
C1i—Sn1—C1—C6 −111.4 (3) C5—C4—C3—C2 −0.8 (7)
Cl1i—Sn1—C1—C6 113.9 (3) C1—C2—C3—C4 −1.3 (7)
Br1i—Sn1—C1—C6 113.9 (3) C7—C2—C3—C4 175.0 (4)
Br1—Sn1—C1—C6 24.1 (3) C8—N1—C7—C2 −75.8 (4)
C2—C1—C6—C5 −2.0 (5) C9—N1—C7—C2 165.8 (4)
Sn1—C1—C6—C5 179.5 (3) C1—C2—C7—N1 −37.0 (5)
C6—C1—C2—C3 2.6 (6) C3—C2—C7—N1 146.8 (4)
Sn1—C1—C2—C3 −178.8 (3)

Symmetry codes: (i) −x+2, y, −z+1/2.

Table 1 Y—H···π-ring interactions.

Y—H···Cg Y—H H···Cg Y···Cg Y—H···Cg
C3—H3···Cg1ii 0.93 3.19 3.78 (1) 123

Symmetry code: (ii) -1/2 + x, 1/2 + y, z. Cg1 is the centroid of the benzene ring C1–C6.

Table 2 Hydrogen-bond geometry (Å, °)

D-H···A D-H H···A D···A D-H···A
C4-H4···Cl1ii/Br1ii 0.93 2.87 3.798 (5) 173
C6-H6···Cl1iii/Br1iii 0.93 3.02 3.710 (3) 132

Symmetry code: (ii) -0.5+x, 0.5+y, z, (iii) 2-x, 1-y, 1-z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GD2029).

References

  1. Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
  2. Bruker (2000). SMART (Version 5.625) and SAINT-Plus (Version 6.29). Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Bruker (2001). SHELXTL Version 6.10.12. Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Emsley, J. (1994). Die Elemente Berlin: Walter de Gruyter.
  5. IUPAC (1979). Nomenclature of Organic Chemistry Oxford: Pergamon Press.
  6. Rotar, A., Varga, R. A. & Silvestru, C. (2007). Acta Cryst. C63, m355–m356. [DOI] [PubMed]
  7. Varga, R. A., Rotar, A., Schuermann, M., Jurkschat, K. & Silvestru, C. (2006). Eur. J. Inorg. Chem.7, 1475–1486.
  8. Varga, R. A., Schuermann, M. & Silvestru, C. (2001). J. Organomet. Chem.623, 161–167.
  9. Varga, R. A. & Silvestru, C. (2007). Acta Cryst. C63, m48–m50. [DOI] [PubMed]
  10. Varga, R. A., Silvestru, C. & Deleanu, C. (2005). Appl. Organomet. Chem.19, 153–160.
  11. Westrip, S. P. (2007). publCIF In preparation.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807063386/gd2029sup1.cif

e-64-00m45-sup1.cif (15.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063386/gd2029Isup2.hkl

e-64-00m45-Isup2.hkl (86.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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