Abstract
In the title compound, C10H13O4N2 +·NO3 −, the nitro group and the benzene ring are essentially coplanar. The dihedral angle between the benzene ring and the methylcarboxylate plane is 49.6 (3)°. The crystal structure is stabilized by cation–anion N—H⋯O and N—H⋯N hydrogen bonds, building sheets parallel to (001).
Related literature
For details of α-amino acid derivatives, see: Lucchese et al. (2007 ▶); Arki et al. (2004 ▶); Hauck et al. (2006 ▶); Dai & Fu (2008 ▶); Wen (2008 ▶); Azim et al. (2006 ▶).
Experimental
Crystal data
C10H13N2O4 +·NO3 −
M r = 287.23
Monoclinic,
a = 5.3722 (11) Å
b = 8.4244 (17) Å
c = 15.380 (3) Å
β = 93.67 (3)°
V = 694.6 (2) Å3
Z = 2
Mo Kα radiation
μ = 0.12 mm−1
T = 298 (2) K
0.25 × 0.20 × 0.20 mm
Data collection
Rigaku Mercury2 diffractometer
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.94, T max = 0.96
7232 measured reflections
1682 independent reflections
1164 reflections with I > 2σ(I)
R int = 0.048
Refinement
R[F 2 > 2σ(F 2)] = 0.055
wR(F 2) = 0.160
S = 1.04
1682 reflections
181 parameters
7 restraints
H-atom parameters constrained
Δρmax = 0.24 e Å−3
Δρmin = −0.35 e Å−3
Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808028390/ci2667sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808028390/ci2667Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2B⋯O5i | 0.89 | 1.90 | 2.771 (4) | 166 |
| N2—H2B⋯N3i | 0.89 | 2.60 | 3.402 (4) | 151 |
| N2—H2B⋯O6i | 0.89 | 2.61 | 3.218 (5) | 126 |
| N2—H2C⋯O6ii | 0.89 | 2.35 | 2.950 (5) | 124 |
| N2—H2C⋯O3iii | 0.89 | 2.41 | 2.929 (5) | 117 |
| N2—H2C⋯O7iii | 0.89 | 2.47 | 3.176 (5) | 137 |
| N2—H2A⋯O7 | 0.89 | 2.12 | 2.993 (5) | 166 |
| N2—H2A⋯O5 | 0.89 | 2.26 | 2.917 (4) | 130 |
| N2—H2A⋯N3 | 0.89 | 2.56 | 3.402 (4) | 158 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
This work was supported by a start-up grant from Southeast University to Professor Ren-Gen Xiong.
supplementary crystallographic information
Comment
Amino acid derivatives are important compounds due to their biological activities, and there has been an increased interest in the enantiomeric preparation of α-amino acid derivatives as precursors for the synthesis of novel biologically active molecules (Lucchese et al., 2007; Arki et al., 2004; Hauck et al., 2006; Azim et al., 2006; Dai et al., 2008; Wen, 2008). Here we report the crystal structure of the title compound.
The asymmetric unit of the title compound contains a organic cation and a NO3- anion (Fig. 1). The nitro group and the benzene ring are essentially coplanar, and the methyl 2-aminopropanoate substituent group is in an extended conformation. The dihedral angle between the C1–C6 and C8–C10/O3/O4 planes is 49.6 (3)°. The S absolute configuration at C8 was deduced from the synthetic pathway.
The crystal packing is stabilized by cation–anion N—H···O and N—H···N hydrogen bonds (Table 1) building sheets parallel to the (001) (Fig. 2).
Experimental
Under nitrogen protection, 2-amino-3-phenylpropanoic acid (30 mmol), nitric acid (50 mmol) and sulfuric acid (20 mmol) were added in a flask. The mixture was stirred at 383 K for 3 h. The resulting solution was poured into ice water (100 ml), then filtered and washed with distilled water. The nitration amino acid was esterified with H2SO4 and CH3OH at 383 K for 12 h. The crude product obtained by evaporation of the solution was recrystallized with distilled water (15 ml)-HNO3 (1 ml) to yield colourless block-like crystals, suitable for X-ray analysis.
Refinement
All H atoms attached to C atoms and N atom were placed geometrically and treated as riding with C—H = 0.96 Å (methyl), 0.97 Å (methylene), 0.98 Å (methine), 0.93 Å (aromatic) and N—H = 0.89 Å with Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5Ueq(N and methyl C). In the absence of significant anomalous scattering, Friedel pairs were merged.
Figures
Fig. 1.
The molecular structure of the title compound, with the atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.
Fig. 2.
The crystal packing of the title compound, viewed along the b axis. H atoms not involved in hydrogen bonding (dashed lines) have been omitted for clarity.
Crystal data
| C10H13N2O4+·NO3− | F(000) = 300 |
| Mr = 287.23 | Dx = 1.373 Mg m−3 |
| Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2yb | Cell parameters from 1657 reflections |
| a = 5.3722 (11) Å | θ = 3.6–27.5° |
| b = 8.4244 (17) Å | µ = 0.12 mm−1 |
| c = 15.380 (3) Å | T = 298 K |
| β = 93.67 (3)° | Block, colourless |
| V = 694.6 (2) Å3 | 0.25 × 0.20 × 0.20 mm |
| Z = 2 |
Data collection
| Rigaku Mercury2 diffractometer | 1682 independent reflections |
| Radiation source: fine-focus sealed tube | 1164 reflections with I > 2σ(I) |
| graphite | Rint = 0.048 |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.6° |
| ω scans | h = −6→6 |
| Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −10→10 |
| Tmin = 0.94, Tmax = 0.96 | l = −19→19 |
| 7232 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.160 | H-atom parameters constrained |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0812P)2 + 0.1127P] where P = (Fo2 + 2Fc2)/3 |
| 1682 reflections | (Δ/σ)max = 0.001 |
| 181 parameters | Δρmax = 0.24 e Å−3 |
| 7 restraints | Δρmin = −0.35 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O6 | 0.2827 (6) | 0.2359 (4) | 0.41323 (19) | 0.0739 (9) | |
| N2 | 0.9977 (5) | 0.4443 (4) | 0.55140 (18) | 0.0502 (8) | |
| H2A | 0.8876 | 0.4035 | 0.5118 | 0.075* | |
| H2B | 1.1460 | 0.3995 | 0.5461 | 0.075* | |
| H2C | 1.0094 | 0.5485 | 0.5431 | 0.075* | |
| O4 | 0.7381 (10) | 0.2064 (5) | 0.7129 (2) | 0.1100 (13) | |
| N3 | 0.4793 (6) | 0.2783 (4) | 0.4504 (2) | 0.0551 (8) | |
| C8 | 0.9152 (6) | 0.4134 (5) | 0.6393 (2) | 0.0450 (8) | |
| H8 | 0.7528 | 0.4645 | 0.6444 | 0.054* | |
| O7 | 0.6843 (6) | 0.2597 (5) | 0.4190 (2) | 0.0895 (11) | |
| O3 | 0.9747 (8) | 0.1395 (4) | 0.6053 (2) | 0.0883 (12) | |
| C4 | 0.9935 (7) | 0.4905 (5) | 0.7975 (2) | 0.0549 (10) | |
| C7 | 1.1003 (7) | 0.4825 (6) | 0.7094 (2) | 0.0600 (10) | |
| H7A | 1.2495 | 0.4175 | 0.7135 | 0.072* | |
| H7B | 1.1478 | 0.5885 | 0.6921 | 0.072* | |
| O5 | 0.4776 (5) | 0.3493 (7) | 0.5199 (2) | 0.0973 (15) | |
| C9 | 0.8833 (9) | 0.2365 (6) | 0.6494 (2) | 0.0620 (11) | |
| C2 | 0.9717 (13) | 0.4069 (9) | 0.9457 (3) | 0.0971 (19) | |
| H2 | 1.0311 | 0.3444 | 0.9924 | 0.117* | |
| C5 | 0.7944 (10) | 0.5923 (6) | 0.8092 (3) | 0.0721 (13) | |
| H5 | 0.7337 | 0.6558 | 0.7631 | 0.086* | |
| C3 | 1.0808 (10) | 0.3984 (8) | 0.8659 (3) | 0.0818 (14) | |
| H3 | 1.2137 | 0.3297 | 0.8593 | 0.098* | |
| C1 | 0.7795 (11) | 0.5067 (8) | 0.9543 (3) | 0.0828 (16) | |
| N1 | 0.6608 (16) | 0.5128 (10) | 1.0390 (3) | 0.120 (2) | |
| C6 | 0.6851 (10) | 0.6006 (7) | 0.8881 (3) | 0.0839 (15) | |
| H6 | 0.5514 | 0.6682 | 0.8957 | 0.101* | |
| O2 | 0.4950 (14) | 0.6095 (13) | 1.0471 (4) | 0.172 (3) | |
| C10 | 0.6934 (16) | 0.0396 (7) | 0.7309 (4) | 0.1130 (13) | |
| H10A | 0.5863 | 0.0308 | 0.7784 | 0.170* | |
| H10B | 0.8492 | −0.0121 | 0.7463 | 0.170* | |
| H10C | 0.6150 | −0.0099 | 0.6801 | 0.170* | |
| O1 | 0.7474 (15) | 0.4254 (10) | 1.0972 (3) | 0.179 (3) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O6 | 0.081 (2) | 0.067 (2) | 0.0724 (19) | −0.0210 (17) | −0.0044 (16) | −0.0037 (17) |
| N2 | 0.0498 (16) | 0.0528 (19) | 0.0501 (16) | −0.0008 (14) | 0.0186 (13) | 0.0031 (14) |
| O4 | 0.196 (4) | 0.0643 (19) | 0.0772 (17) | −0.047 (2) | 0.069 (2) | −0.0111 (15) |
| N3 | 0.0503 (18) | 0.057 (2) | 0.059 (2) | 0.0003 (15) | 0.0103 (15) | −0.0039 (17) |
| C8 | 0.0437 (17) | 0.051 (2) | 0.0413 (17) | −0.0039 (16) | 0.0150 (14) | −0.0033 (16) |
| O7 | 0.074 (2) | 0.102 (3) | 0.095 (2) | 0.019 (2) | 0.0339 (18) | −0.010 (2) |
| O3 | 0.143 (3) | 0.0526 (18) | 0.075 (2) | 0.0141 (19) | 0.044 (2) | 0.0034 (17) |
| C4 | 0.064 (2) | 0.054 (2) | 0.0467 (19) | −0.0102 (19) | 0.0012 (16) | −0.0040 (18) |
| C7 | 0.055 (2) | 0.069 (3) | 0.056 (2) | −0.006 (2) | 0.0083 (17) | 0.005 (2) |
| O5 | 0.0501 (16) | 0.153 (4) | 0.089 (2) | 0.005 (2) | 0.0032 (16) | −0.057 (3) |
| C9 | 0.092 (3) | 0.053 (2) | 0.0432 (18) | −0.004 (2) | 0.0229 (19) | −0.0008 (19) |
| C2 | 0.138 (5) | 0.105 (5) | 0.047 (2) | −0.012 (5) | −0.002 (3) | 0.009 (3) |
| C5 | 0.095 (3) | 0.066 (3) | 0.054 (2) | 0.003 (3) | 0.006 (2) | −0.003 (2) |
| C3 | 0.095 (3) | 0.090 (4) | 0.060 (3) | 0.007 (3) | −0.001 (2) | 0.012 (3) |
| C1 | 0.103 (4) | 0.094 (4) | 0.053 (3) | −0.030 (3) | 0.022 (3) | −0.020 (3) |
| N1 | 0.166 (6) | 0.144 (6) | 0.052 (3) | −0.059 (5) | 0.028 (3) | −0.027 (4) |
| C6 | 0.099 (4) | 0.089 (4) | 0.066 (3) | 0.001 (3) | 0.018 (3) | −0.027 (3) |
| O2 | 0.183 (6) | 0.240 (9) | 0.102 (4) | −0.022 (6) | 0.070 (4) | −0.058 (5) |
| C10 | 0.199 (4) | 0.067 (2) | 0.0810 (18) | −0.046 (2) | 0.067 (2) | −0.0103 (17) |
| O1 | 0.265 (8) | 0.211 (8) | 0.065 (3) | −0.043 (6) | 0.046 (4) | 0.005 (4) |
Geometric parameters (Å, °)
| O6—N3 | 1.222 (4) | C7—H7A | 0.97 |
| N2—C8 | 1.473 (4) | C7—H7B | 0.97 |
| N2—H2A | 0.89 | C2—C1 | 1.344 (8) |
| N2—H2B | 0.89 | C2—C3 | 1.396 (7) |
| N2—H2C | 0.89 | C2—H2 | 0.93 |
| O4—C9 | 1.312 (5) | C5—C6 | 1.384 (6) |
| O4—C10 | 1.455 (7) | C5—H5 | 0.93 |
| N3—O5 | 1.225 (5) | C3—H3 | 0.93 |
| N3—O7 | 1.241 (4) | C1—C6 | 1.361 (8) |
| C8—C9 | 1.509 (6) | C1—N1 | 1.488 (7) |
| C8—C7 | 1.534 (6) | N1—O2 | 1.219 (11) |
| C8—H8 | 0.98 | N1—O1 | 1.227 (10) |
| O3—C9 | 1.189 (5) | C6—H6 | 0.93 |
| C4—C3 | 1.366 (6) | C10—H10A | 0.96 |
| C4—C5 | 1.392 (7) | C10—H10B | 0.96 |
| C4—C7 | 1.506 (5) | C10—H10C | 0.96 |
| C8—N2—H2A | 109.5 | O3—C9—C8 | 124.5 (4) |
| C8—N2—H2B | 109.5 | O4—C9—C8 | 110.1 (4) |
| H2A—N2—H2B | 109.5 | C1—C2—C3 | 119.1 (5) |
| C8—N2—H2C | 109.5 | C1—C2—H2 | 120.4 |
| H2A—N2—H2C | 109.5 | C3—C2—H2 | 120.4 |
| H2B—N2—H2C | 109.5 | C6—C5—C4 | 121.2 (5) |
| C9—O4—C10 | 116.2 (4) | C6—C5—H5 | 119.4 |
| O6—N3—O5 | 119.8 (3) | C4—C5—H5 | 119.4 |
| O6—N3—O7 | 122.9 (4) | C4—C3—C2 | 120.4 (5) |
| O5—N3—O7 | 117.2 (4) | C4—C3—H3 | 119.8 |
| N2—C8—C9 | 108.2 (3) | C2—C3—H3 | 119.8 |
| N2—C8—C7 | 111.0 (3) | C2—C1—C6 | 122.8 (5) |
| C9—C8—C7 | 112.0 (4) | C2—C1—N1 | 118.8 (7) |
| N2—C8—H8 | 108.5 | C6—C1—N1 | 118.4 (7) |
| C9—C8—H8 | 108.5 | O2—N1—O1 | 124.9 (7) |
| C7—C8—H8 | 108.5 | O2—N1—C1 | 118.0 (8) |
| C3—C4—C5 | 118.6 (4) | O1—N1—C1 | 117.0 (9) |
| C3—C4—C7 | 122.4 (4) | C1—C6—C5 | 117.9 (5) |
| C5—C4—C7 | 118.9 (4) | C1—C6—H6 | 121.0 |
| C4—C7—C8 | 112.4 (3) | C5—C6—H6 | 121.0 |
| C4—C7—H7A | 109.1 | O4—C10—H10A | 109.5 |
| C8—C7—H7A | 109.1 | O4—C10—H10B | 109.5 |
| C4—C7—H7B | 109.1 | H10A—C10—H10B | 109.5 |
| C8—C7—H7B | 109.1 | O4—C10—H10C | 109.5 |
| H7A—C7—H7B | 107.8 | H10A—C10—H10C | 109.5 |
| O3—C9—O4 | 125.4 (4) | H10B—C10—H10C | 109.5 |
| C3—C4—C7—C8 | 112.3 (5) | C5—C4—C3—C2 | 0.0 (8) |
| C5—C4—C7—C8 | −66.0 (5) | C7—C4—C3—C2 | −178.3 (5) |
| N2—C8—C7—C4 | 165.5 (3) | C1—C2—C3—C4 | 0.1 (9) |
| C9—C8—C7—C4 | −73.4 (5) | C3—C2—C1—C6 | 0.1 (9) |
| C10—O4—C9—O3 | 1.7 (9) | C3—C2—C1—N1 | 178.8 (5) |
| C10—O4—C9—C8 | −179.2 (6) | C2—C1—N1—O2 | 176.4 (7) |
| N2—C8—C9—O3 | 19.3 (6) | C6—C1—N1—O2 | −4.9 (9) |
| C7—C8—C9—O3 | −103.4 (5) | C2—C1—N1—O1 | 0.3 (8) |
| N2—C8—C9—O4 | −159.9 (4) | C6—C1—N1—O1 | 179.1 (6) |
| C7—C8—C9—O4 | 77.5 (5) | C2—C1—C6—C5 | −0.3 (8) |
| C3—C4—C5—C6 | −0.2 (7) | N1—C1—C6—C5 | −179.0 (5) |
| C7—C4—C5—C6 | 178.2 (4) | C4—C5—C6—C1 | 0.4 (8) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2B···O5i | 0.89 | 1.90 | 2.771 (4) | 166 |
| N2—H2B···N3i | 0.89 | 2.60 | 3.402 (4) | 151 |
| N2—H2B···O6i | 0.89 | 2.61 | 3.218 (5) | 126 |
| N2—H2C···O6ii | 0.89 | 2.35 | 2.950 (5) | 124 |
| N2—H2C···O3iii | 0.89 | 2.41 | 2.929 (5) | 117 |
| N2—H2C···O7iii | 0.89 | 2.47 | 3.176 (5) | 137 |
| N2—H2A···O7 | 0.89 | 2.12 | 2.993 (5) | 166 |
| N2—H2A···O5 | 0.89 | 2.26 | 2.917 (4) | 130 |
| N2—H2A···N3 | 0.89 | 2.56 | 3.402 (4) | 158 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, y+1/2, −z+1; (iii) −x+2, y+1/2, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CI2667).
References
- Arki, A., Tourwe, D., Solymar, M., Fueloep, F., Armstrong, D. W. & Peter, A. (2004). Chromatographia, 60, S43–S54.
- Azim, A., Shah, V. & Doncel, G.-F. (2006). Bioconjugate Chem.17, 1523–1529. [DOI] [PubMed]
- Dai, W. & Fu, D.-W. (2008). Acta Cryst. E64, o974. [DOI] [PMC free article] [PubMed]
- Hauck, T., Sunkel, K. & Beck, W. (2006). Z. Anorg. Allg. Chem 632, 2305-2309.
- Lucchese, G., Stufano, A. & Trost, B. (2007). Amino Acids, 33, 703–707. [DOI] [PubMed]
- Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Wen, X.-C. (2008). Acta Cryst. E64, o1460. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808028390/ci2667sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808028390/ci2667Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


