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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Sep 6;64(Pt 10):o1892. doi: 10.1107/S1600536808027670

4-(2,4-Dichlorophenyl)-2-(1H-indol-3-yl)-6-methoxypyridine-3,5-dicarbonitrile

P Ramesh a, A Subbiahpandi a, P Thirumurugan b, P T Perumal b, M N Ponnuswamy c,*
PMCID: PMC2959379  PMID: 21201104

Abstract

In the title compound, C22H12Cl2N4O, the indole ring system and the benzene ring form dihedral angles of 21.18 (7)° and 68.43 (8)°, respectively, with the pyridine ring. The meth­oxy group is coplanar with the pyridine ring. In the crystal structure N—H⋯N inter­molecular hydrogen bonds link the mol­ecules into C(10) chains running along [011]. Intramolec­ular C—H⋯N hydrogen bonds are also observed.

Related literature

For related literature, see: James et al. (1991); Kobayashi et al. (1991); Rajeswaran et al. (1999). For graph-set analysis of hydrogen-bonding patterns, see: Bernstein et al. (1995).graphic file with name e-64-o1892-scheme1.jpg

Experimental

Crystal data

  • C22H12Cl2N4O

  • M r = 419.26

  • Triclinic, Inline graphic

  • a = 9.5394 (2) Å

  • b = 10.0358 (2) Å

  • c = 11.1739 (3) Å

  • α = 111.994 (1)°

  • β = 97.303 (1)°

  • γ = 93.715 (1)°

  • V = 976.46 (4) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.35 mm−1

  • T = 298 (2) K

  • 0.58 × 0.40 × 0.28 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2001) T min = 0.821, T max = 0.907

  • 10781 measured reflections

  • 3401 independent reflections

  • 3019 reflections with I > 2σ(I)

  • R int = 0.018

Refinement

  • R[F 2 > 2σ(F 2)] = 0.033

  • wR(F 2) = 0.096

  • S = 1.05

  • 3401 reflections

  • 267 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.28 e Å−3

  • Δρmin = −0.37 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: APEX2; data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, (1997)); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808027670/ci2655sup1.cif

e-64-o1892-sup1.cif (21.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808027670/ci2655Isup2.hkl

e-64-o1892-Isup2.hkl (163.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C9—H9⋯N1 0.93 2.56 3.045 (2) 113
C15—H15⋯N17 0.93 2.56 3.282 (2) 135
N14—H14⋯N25i 0.83 (2) 2.22 (2) 2.996 (2) 156 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

PR thanks V. Ramkumar, Department of Chemistry, IIT-Madras, Chennai, India, for his help with the data collection.

supplementary crystallographic information

Comment

Spiro compounds are the naturally occurring substances which exibit many biological properties (Kobayashi et al., 1991; James et al., 1991). Indoles have been proved to display high aldose reductase inhibitory activity (Rajeswaran et al.., 1999). In view of this an X-ray diffraction study of the title compound was carrid out.

The indole ring system is essentially planar. The indole ring system and the benzene ring form dihedral angles of 21.18 (7)° and 68.43 (8)°, respectively, with the pyridine ring. The methoxy group is coplanar with the pyridine ring, with the C26—O1—C6—N1 torsion angle being 4.9 (2)°. C—H···N type intramolecular hydrogen bonds are observed in the molecular structure.

In the crystal structure N—H···N intermolecular hydrogen bonds link the molecules into C(10) chains (Bernstein et al., 1995) running along the [0 1 1].

Experimental

A mixture of 3-cyanoacetyl indole (1 mmol), 2,4 dichlorobenzaldehyde (1 mmol) and sodium hydroxide (1.2 mmol) in methanol was refluxed. After 15 min malanonitrile (1 mmol) was added and the reflux was continued for 4 h. After the completion of the reaction (as monitored by TLC), it was poured into water and extracted with ethyl acetate. The organic layer was dried over sodium sulfate and concentrated under vacuo. The crude product was chromatographed and isolated in 78% yield (90:10, petroleum ether: ethyl acetate). The crude product was recrystallized in ethanol.

Refinement

The imine H atom was located in a difference map and refined freely. The remaining H atoms were positioned geometrically (C-H = 0.93–0.96 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.2-1.5Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level.

Crystal data

C22H12Cl2N4O Z = 2
Mr = 419.26 F(000) = 428
Triclinic, P1 Dx = 1.426 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 9.5394 (2) Å Cell parameters from 2563 reflections
b = 10.0358 (2) Å θ = 2.2–25.0°
c = 11.1739 (3) Å µ = 0.35 mm1
α = 111.994 (1)° T = 298 K
β = 97.303 (1)° Block, yellow
γ = 93.715 (1)° 0.58 × 0.40 × 0.28 mm
V = 976.46 (4) Å3

Data collection

Bruker APEXII CCD area-detector diffractometer 3401 independent reflections
Radiation source: fine-focus sealed tube 3019 reflections with I > 2σ(I)
graphite Rint = 0.019
ω and φ scans θmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) h = −11→11
Tmin = 0.821, Tmax = 0.907 k = −11→10
10781 measured reflections l = −11→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096 H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0487P)2 + 0.3783P] where P = (Fo2 + 2Fc2)/3
3401 reflections (Δ/σ)max = 0.005
267 parameters Δρmax = 0.29 e Å3
0 restraints Δρmin = −0.37 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 −0.20213 (5) 0.05813 (6) 0.06721 (6) 0.06710 (19)
Cl2 0.18710 (5) 0.43669 (6) 0.01921 (5) 0.05569 (16)
O1 0.71041 (12) 0.47517 (13) 0.22771 (11) 0.0440 (3)
N1 0.60609 (13) 0.63393 (14) 0.38834 (12) 0.0322 (3)
C2 0.49048 (16) 0.66990 (16) 0.44682 (14) 0.0294 (3)
C3 0.36036 (15) 0.57682 (16) 0.39683 (14) 0.0293 (3)
C4 0.34811 (16) 0.45252 (16) 0.28224 (14) 0.0294 (3)
C5 0.46814 (16) 0.42069 (17) 0.22319 (15) 0.0332 (4)
C6 0.59570 (16) 0.51473 (17) 0.28335 (15) 0.0327 (3)
C7 0.51214 (16) 0.80627 (17) 0.55884 (15) 0.0322 (3)
C8 0.62593 (17) 0.92294 (16) 0.58897 (15) 0.0332 (3)
C9 0.73824 (19) 0.94826 (18) 0.52844 (17) 0.0417 (4)
H9 0.7519 0.8801 0.4486 0.050*
C10 0.8286 (2) 1.0759 (2) 0.5888 (2) 0.0505 (5)
H10 0.9042 1.0927 0.5493 0.061*
C11 0.8089 (2) 1.18028 (19) 0.7078 (2) 0.0516 (5)
H11 0.8719 1.2651 0.7464 0.062*
C12 0.6985 (2) 1.16004 (19) 0.76875 (18) 0.0474 (4)
H12 0.6843 1.2300 0.8474 0.057*
C13 0.60840 (18) 1.03058 (18) 0.70822 (16) 0.0380 (4)
N14 0.49146 (17) 0.98300 (16) 0.74801 (15) 0.0456 (4)
H14 0.462 (2) 1.023 (2) 0.818 (2) 0.057 (6)*
C15 0.43425 (18) 0.85081 (18) 0.66041 (16) 0.0399 (4)
H15 0.3544 0.7974 0.6671 0.048*
C16 0.23671 (17) 0.61040 (17) 0.45772 (15) 0.0349 (4)
N17 0.13813 (16) 0.63647 (17) 0.50645 (16) 0.0519 (4)
C18 0.21094 (15) 0.35534 (16) 0.22670 (14) 0.0302 (3)
C19 0.15904 (18) 0.27834 (18) 0.29551 (16) 0.0380 (4)
H19 0.2100 0.2892 0.3759 0.046*
C20 0.03299 (19) 0.18576 (19) 0.24684 (18) 0.0441 (4)
H20 0.0002 0.1335 0.2932 0.053*
C21 −0.04298 (17) 0.17221 (18) 0.12898 (18) 0.0427 (4)
C22 0.00404 (17) 0.24803 (19) 0.05835 (17) 0.0425 (4)
H22 −0.0485 0.2383 −0.0211 0.051*
C23 0.13088 (17) 0.33881 (17) 0.10799 (15) 0.0353 (4)
C24 0.46601 (17) 0.29503 (19) 0.10682 (16) 0.0404 (4)
N25 0.46376 (18) 0.19450 (19) 0.01436 (16) 0.0597 (5)
C26 0.84527 (18) 0.5613 (2) 0.29323 (18) 0.0490 (5)
H26A 0.8435 0.6564 0.2920 0.073*
H26B 0.9201 0.5162 0.2491 0.073*
H26C 0.8619 0.5687 0.3822 0.073*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0368 (3) 0.0635 (3) 0.0759 (4) −0.0164 (2) 0.0051 (2) 0.0037 (3)
Cl2 0.0581 (3) 0.0665 (3) 0.0449 (3) −0.0046 (2) −0.0027 (2) 0.0297 (2)
O1 0.0292 (6) 0.0475 (7) 0.0372 (6) 0.0012 (5) 0.0101 (5) −0.0049 (5)
N1 0.0281 (7) 0.0327 (7) 0.0266 (7) 0.0013 (5) 0.0038 (5) 0.0017 (5)
C2 0.0310 (8) 0.0295 (7) 0.0237 (7) 0.0045 (6) 0.0040 (6) 0.0058 (6)
C3 0.0292 (8) 0.0296 (8) 0.0248 (7) 0.0043 (6) 0.0047 (6) 0.0053 (6)
C4 0.0286 (8) 0.0301 (8) 0.0251 (7) 0.0030 (6) 0.0010 (6) 0.0069 (6)
C5 0.0318 (8) 0.0322 (8) 0.0261 (8) 0.0027 (6) 0.0044 (6) 0.0008 (6)
C6 0.0292 (8) 0.0354 (8) 0.0272 (8) 0.0033 (6) 0.0059 (6) 0.0049 (6)
C7 0.0315 (8) 0.0308 (8) 0.0264 (8) 0.0031 (6) 0.0025 (6) 0.0031 (6)
C8 0.0358 (8) 0.0287 (8) 0.0286 (8) 0.0041 (6) 0.0000 (6) 0.0056 (6)
C9 0.0469 (10) 0.0356 (9) 0.0391 (9) 0.0028 (7) 0.0097 (8) 0.0099 (7)
C10 0.0497 (11) 0.0440 (10) 0.0567 (12) −0.0032 (8) 0.0108 (9) 0.0190 (9)
C11 0.0547 (11) 0.0342 (9) 0.0547 (12) −0.0084 (8) −0.0026 (9) 0.0104 (8)
C12 0.0556 (11) 0.0327 (9) 0.0384 (10) −0.0009 (8) −0.0011 (8) 0.0002 (7)
C13 0.0412 (9) 0.0329 (8) 0.0309 (8) 0.0031 (7) 0.0012 (7) 0.0040 (7)
N14 0.0491 (9) 0.0395 (8) 0.0308 (8) 0.0010 (7) 0.0124 (7) −0.0071 (6)
C15 0.0384 (9) 0.0378 (9) 0.0308 (8) −0.0009 (7) 0.0071 (7) −0.0006 (7)
C16 0.0324 (8) 0.0324 (8) 0.0305 (8) −0.0003 (6) 0.0045 (7) 0.0027 (6)
N17 0.0397 (8) 0.0519 (9) 0.0508 (9) 0.0006 (7) 0.0172 (7) 0.0026 (7)
C18 0.0278 (8) 0.0282 (7) 0.0275 (8) 0.0042 (6) 0.0051 (6) 0.0026 (6)
C19 0.0364 (9) 0.0393 (9) 0.0333 (9) 0.0022 (7) 0.0036 (7) 0.0097 (7)
C20 0.0415 (9) 0.0404 (9) 0.0474 (10) −0.0012 (7) 0.0133 (8) 0.0126 (8)
C21 0.0287 (8) 0.0380 (9) 0.0464 (10) −0.0009 (7) 0.0060 (7) 0.0001 (7)
C22 0.0326 (9) 0.0467 (10) 0.0352 (9) 0.0020 (7) −0.0033 (7) 0.0045 (8)
C23 0.0339 (8) 0.0361 (8) 0.0297 (8) 0.0039 (6) 0.0029 (6) 0.0067 (7)
C24 0.0306 (8) 0.0408 (9) 0.0350 (9) −0.0004 (7) 0.0067 (7) −0.0017 (8)
N25 0.0475 (9) 0.0546 (10) 0.0464 (10) −0.0016 (7) 0.0124 (7) −0.0152 (8)
C26 0.0291 (9) 0.0586 (11) 0.0441 (10) −0.0027 (8) 0.0088 (7) 0.0032 (8)

Geometric parameters (Å, °)

Cl1—C21 1.7345 (16) C11—C12 1.369 (3)
Cl2—C23 1.7418 (17) C11—H11 0.93
O1—C6 1.3363 (19) C12—C13 1.390 (2)
O1—C26 1.443 (2) C12—H12 0.93
N1—C6 1.3119 (19) C13—N14 1.373 (2)
N1—C2 1.3533 (19) N14—C15 1.347 (2)
C2—C3 1.417 (2) N14—H14 0.83 (2)
C2—C7 1.448 (2) C15—H15 0.93
C3—C4 1.399 (2) C16—N17 1.142 (2)
C3—C16 1.432 (2) C18—C19 1.388 (2)
C4—C5 1.389 (2) C18—C23 1.390 (2)
C4—C18 1.491 (2) C19—C20 1.384 (2)
C5—C6 1.411 (2) C19—H19 0.93
C5—C24 1.429 (2) C20—C21 1.374 (3)
C7—C15 1.385 (2) C20—H20 0.93
C7—C8 1.452 (2) C21—C22 1.378 (3)
C8—C9 1.396 (2) C22—C23 1.382 (2)
C8—C13 1.404 (2) C22—H22 0.93
C9—C10 1.378 (2) C24—N25 1.139 (2)
C9—H9 0.93 C26—H26A 0.96
C10—C11 1.395 (3) C26—H26B 0.96
C10—H10 0.93 C26—H26C 0.96
C6—O1—C26 117.54 (12) N14—C13—C12 129.16 (16)
C6—N1—C2 119.61 (13) N14—C13—C8 107.90 (14)
N1—C2—C3 119.97 (13) C12—C13—C8 122.94 (16)
N1—C2—C7 115.10 (13) C15—N14—C13 109.99 (14)
C3—C2—C7 124.94 (13) C15—N14—H14 122.7 (15)
C4—C3—C2 120.27 (13) C13—N14—H14 127.0 (15)
C4—C3—C16 118.28 (13) N14—C15—C7 109.82 (15)
C2—C3—C16 121.39 (13) N14—C15—H15 125.1
C5—C4—C3 118.09 (14) C7—C15—H15 125.1
C5—C4—C18 120.99 (13) N17—C16—C3 179.60 (19)
C3—C4—C18 120.91 (13) C19—C18—C23 117.88 (14)
C4—C5—C6 118.03 (13) C19—C18—C4 119.46 (14)
C4—C5—C24 121.96 (14) C23—C18—C4 122.65 (14)
C6—C5—C24 119.99 (14) C20—C19—C18 121.33 (16)
N1—C6—O1 120.15 (13) C20—C19—H19 119.3
N1—C6—C5 123.88 (14) C18—C19—H19 119.3
O1—C6—C5 115.97 (13) C21—C20—C19 119.01 (17)
C15—C7—C2 128.05 (15) C21—C20—H20 120.5
C15—C7—C8 106.02 (13) C19—C20—H20 120.5
C2—C7—C8 125.90 (14) C20—C21—C22 121.45 (15)
C9—C8—C13 118.23 (15) C20—C21—Cl1 119.68 (15)
C9—C8—C7 135.50 (14) C22—C21—Cl1 118.87 (14)
C13—C8—C7 106.27 (14) C21—C22—C23 118.65 (16)
C10—C9—C8 118.98 (16) C21—C22—H22 120.7
C10—C9—H9 120.5 C23—C22—H22 120.7
C8—C9—H9 120.5 C22—C23—C18 121.66 (16)
C9—C10—C11 121.41 (18) C22—C23—Cl2 118.11 (13)
C9—C10—H10 119.3 C18—C23—Cl2 120.21 (12)
C11—C10—H10 119.3 N25—C24—C5 179.6 (2)
C12—C11—C10 121.15 (17) O1—C26—H26A 109.5
C12—C11—H11 119.4 O1—C26—H26B 109.5
C10—C11—H11 119.4 H26A—C26—H26B 109.5
C11—C12—C13 117.28 (16) O1—C26—H26C 109.5
C11—C12—H12 121.4 H26A—C26—H26C 109.5
C13—C12—H12 121.4 H26B—C26—H26C 109.5
C6—N1—C2—C3 1.9 (2) C8—C9—C10—C11 −0.8 (3)
C6—N1—C2—C7 −177.70 (14) C9—C10—C11—C12 −0.3 (3)
N1—C2—C3—C4 −4.2 (2) C10—C11—C12—C13 0.9 (3)
C7—C2—C3—C4 175.33 (14) C11—C12—C13—N14 179.70 (19)
N1—C2—C3—C16 178.90 (14) C11—C12—C13—C8 −0.5 (3)
C7—C2—C3—C16 −1.6 (2) C9—C8—C13—N14 179.26 (15)
C2—C3—C4—C5 2.7 (2) C7—C8—C13—N14 −0.18 (19)
C16—C3—C4—C5 179.73 (15) C9—C8—C13—C12 −0.6 (3)
C2—C3—C4—C18 −178.57 (14) C7—C8—C13—C12 179.97 (16)
C16—C3—C4—C18 −1.6 (2) C12—C13—N14—C15 179.98 (19)
C3—C4—C5—C6 0.8 (2) C8—C13—N14—C15 0.1 (2)
C18—C4—C5—C6 −177.91 (14) C13—N14—C15—C7 0.0 (2)
C3—C4—C5—C24 179.19 (15) C2—C7—C15—N14 177.82 (16)
C18—C4—C5—C24 0.5 (2) C8—C7—C15—N14 −0.1 (2)
C2—N1—C6—O1 −177.39 (14) C5—C4—C18—C19 112.23 (18)
C2—N1—C6—C5 1.9 (2) C3—C4—C18—C19 −66.4 (2)
C26—O1—C6—N1 4.9 (2) C5—C4—C18—C23 −68.3 (2)
C26—O1—C6—C5 −174.42 (16) C3—C4—C18—C23 113.05 (17)
C4—C5—C6—N1 −3.3 (3) C23—C18—C19—C20 1.2 (2)
C24—C5—C6—N1 178.32 (16) C4—C18—C19—C20 −179.29 (15)
C4—C5—C6—O1 176.04 (15) C18—C19—C20—C21 −1.1 (3)
C24—C5—C6—O1 −2.4 (2) C19—C20—C21—C22 0.3 (3)
N1—C2—C7—C15 −158.09 (17) C19—C20—C21—Cl1 −179.34 (13)
C3—C2—C7—C15 22.4 (3) C20—C21—C22—C23 0.3 (3)
N1—C2—C7—C8 19.4 (2) Cl1—C21—C22—C23 179.99 (12)
C3—C2—C7—C8 −160.10 (15) C21—C22—C23—C18 −0.2 (2)
C15—C7—C8—C9 −179.15 (19) C21—C22—C23—Cl2 −178.73 (13)
C2—C7—C8—C9 2.9 (3) C19—C18—C23—C22 −0.5 (2)
C15—C7—C8—C13 0.16 (18) C4—C18—C23—C22 179.96 (14)
C2—C7—C8—C13 −177.80 (15) C19—C18—C23—Cl2 177.97 (12)
C13—C8—C9—C10 1.2 (3) C4—C18—C23—Cl2 −1.5 (2)
C7—C8—C9—C10 −179.58 (18)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C9—H9···N1 0.93 2.56 3.045 (2) 113
C15—H15···N17 0.93 2.56 3.282 (2) 135
N14—H14···N25i 0.83 (2) 2.22 (2) 2.996 (2) 156 (2)

Symmetry codes: (i) x, y+1, z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CI2655).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808027670/ci2655sup1.cif

e-64-o1892-sup1.cif (21.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808027670/ci2655Isup2.hkl

e-64-o1892-Isup2.hkl (163.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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