Abstract
The title compound, C14H12BrN3O3, was prepared by reaction of 5-bromo-3-methoxysalicylaldehyde and isonicotinohydrazide in methanol. The molecule is not planar and adopts a trans configuration with respect to the C=N bond. There is an intramolecular O—H⋯N hydrogen bond in the molecule. The dihedral angle between the benzene and pyridine rings is 12.2 (2)°. In the crystal structure, molecules are linked through intermolecular N—H⋯N hydrogen bonds, forming chains running along the c-axis direction.
Related literature
For bond-length data, see: Allen et al. (1987 ▶). For background on the biological properties of hydrazones, see: El-Tabl et al. (2008 ▶), Chen et al. (2008 ▶); Alvarez et al. (2008 ▶); Ventura & Martins (2008 ▶); Kalinowski et al. (2008 ▶). For related structures, see: Peng & Hou (2008 ▶); Shan et al. (2008 ▶); Fun et al. (2008 ▶); Yehye et al. (2008 ▶); Ejsmont et al. (2008 ▶); Han et al. (2006 ▶); Lu et al. (2008 ▶).
Experimental
Crystal data
C14H12BrN3O3
M r = 350.18
Monoclinic,
a = 7.4937 (9) Å
b = 15.8843 (19) Å
c = 11.7994 (14) Å
β = 99.776 (2)°
V = 1384.1 (3) Å3
Z = 4
Mo Kα radiation
μ = 2.98 mm−1
T = 298 (2) K
0.20 × 0.18 × 0.18 mm
Data collection
Bruker SMART 1000 CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.587, T max = 0.616 (expected range = 0.557–0.584)
8003 measured reflections
3013 independent reflections
2299 reflections with I > 2σ(I)
R int = 0.023
Refinement
R[F 2 > 2σ(F 2)] = 0.030
wR(F 2) = 0.076
S = 1.03
3013 reflections
195 parameters
1 restraint
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.39 e Å−3
Δρmin = −0.41 e Å−3
Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029607/sj2539sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029607/sj2539Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2⋯N3i | 0.889 (10) | 2.255 (13) | 3.126 (3) | 166 (3) |
| O1—H1⋯N1 | 0.82 | 1.93 | 2.643 (2) | 145 |
Symmetry code: (i)
.
Acknowledgments
The corresponding author gratefully acknowledges Changsha University of Science and Technology for research grants.
supplementary crystallographic information
Comment
Hydrazones derived from the reactions of aldehydes with hydrazides show potential biological properties (El-Tabl et al., 2008; Chen et al., 2008; Alvarez et al., 2008; Ventura & Martins, 2008; Kalinowski et al., 2008). In the last few years, a large number of hydrazones have been reported (Peng & Hou, 2008; Shan et al., 2008; Fun et al., 2008; Yehye et al., 2008; Ejsmont et al., 2008). As a continuation of our work in this area (Peng & Hou, 2008) we report here the crystal structure of the title compound, (I), Fig. 1.
In the molecule of the title compound (I) the C7═N1 length of 1.275 (3) Å indicates a typical C═N bond. The molecule exists in a trans configuration with respect to the methylidene unit (C7═N1), as observed in other similar compounds (Han et al., 2006; Lu et al., 2008). There is an intramolecular O—H···N hydrogen bond in the molecule. The dihedral angle between the benzene and pyridine rings is 12.2 (2)°, indicating the molecule is not planar. The bond lengths are in normal ranges (Allen et al., 1987).
In the crystal structure, molecules are linked through intermolecular N—H···N hydrogen bonds (Table 1), forming chains running along the c direction (Fig. 2).
Experimental
5-Bromo-3-methoxysalicylaldehyde (0.231 g, 1 mmol) was dissolved in methanol (50 ml), then isonicotinohydrazide (0.137 g, 1 mmol) was added slowly to the solution, and the mixture was heated at reflux with continuous stirring for 1 h. The solution was cooled to room temperature, yielding colorless crystallites. Recrystallization from an absolute methanol yielded block-like single crystals of the compound.
Refinement
H2 was located in a difference Fourier map and refined isotropically, with the N—H distance restrained to 0.90 (1) Å, and with Uiso set at 0.08 Å2. Other H atoms were placed in calculated positions with C—H distances of 0.93–0.96 Å, O—H distance of 0.82 Å, and refined in riding mode with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(O).
Figures
Fig. 1.
The molecular structure of the title compound with 30% probability displacement ellipsoids for non-H atoms; the intramolecular hydrogen bond is drawn as a dashed line.
Fig. 2.
The packing diagram of the title compound, viewed down the b axis. Hydrogen bonds are shown as dashed lines and hydrogen atoms not involved in these interactions have been omitted..
Crystal data
| C14H12BrN3O3 | F(000) = 704 |
| Mr = 350.18 | Dx = 1.680 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 3223 reflections |
| a = 7.4937 (9) Å | θ = 2.5–29.2° |
| b = 15.8843 (19) Å | µ = 2.98 mm−1 |
| c = 11.7994 (14) Å | T = 298 K |
| β = 99.776 (2)° | Block, colorless |
| V = 1384.1 (3) Å3 | 0.20 × 0.18 × 0.18 mm |
| Z = 4 |
Data collection
| Bruker SMART 1000 CCD area-detector diffractometer | 3013 independent reflections |
| Radiation source: fine-focus sealed tube | 2299 reflections with I > 2σ(I) |
| graphite | Rint = 0.023 |
| ω scans | θmax = 27.0°, θmin = 2.6° |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −9→9 |
| Tmin = 0.587, Tmax = 0.616 | k = −17→20 |
| 8003 measured reflections | l = −15→11 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.076 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.0328P)2 + 0.5984P] where P = (Fo2 + 2Fc2)/3 |
| 3013 reflections | (Δ/σ)max = 0.001 |
| 195 parameters | Δρmax = 0.39 e Å−3 |
| 1 restraint | Δρmin = −0.41 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Br1 | 0.28353 (5) | 0.417081 (18) | 1.029574 (19) | 0.06245 (12) | |
| O1 | 0.1144 (2) | 0.35958 (10) | 0.51873 (12) | 0.0457 (4) | |
| H1 | 0.1510 | 0.3985 | 0.4832 | 0.069* | |
| O2 | 0.0357 (2) | 0.24186 (10) | 0.65725 (13) | 0.0473 (4) | |
| O3 | 0.2696 (3) | 0.49630 (11) | 0.27412 (14) | 0.0651 (6) | |
| N1 | 0.2592 (2) | 0.50906 (11) | 0.49603 (15) | 0.0366 (4) | |
| N2 | 0.3058 (3) | 0.57618 (11) | 0.43355 (15) | 0.0368 (4) | |
| N3 | 0.3899 (3) | 0.77447 (12) | 0.10697 (16) | 0.0422 (5) | |
| C1 | 0.2305 (3) | 0.45105 (13) | 0.67791 (17) | 0.0322 (5) | |
| C2 | 0.1524 (3) | 0.37588 (13) | 0.63313 (16) | 0.0314 (4) | |
| C3 | 0.1127 (3) | 0.31267 (13) | 0.70889 (17) | 0.0328 (5) | |
| C4 | 0.1548 (3) | 0.32447 (14) | 0.82630 (17) | 0.0352 (5) | |
| H4 | 0.1314 | 0.2823 | 0.8765 | 0.042* | |
| C5 | 0.2323 (3) | 0.39986 (14) | 0.86841 (17) | 0.0370 (5) | |
| C6 | 0.2695 (3) | 0.46250 (14) | 0.79697 (17) | 0.0375 (5) | |
| H6 | 0.3208 | 0.5127 | 0.8274 | 0.045* | |
| C7 | 0.2776 (3) | 0.51825 (13) | 0.60474 (18) | 0.0376 (5) | |
| H7 | 0.3220 | 0.5689 | 0.6378 | 0.045* | |
| C8 | 0.3013 (3) | 0.56400 (14) | 0.31958 (18) | 0.0379 (5) | |
| C9 | 0.3367 (3) | 0.64012 (13) | 0.25079 (17) | 0.0321 (5) | |
| C10 | 0.2656 (3) | 0.63897 (14) | 0.13450 (18) | 0.0408 (5) | |
| H10 | 0.1991 | 0.5929 | 0.1022 | 0.049* | |
| C11 | 0.2945 (3) | 0.70697 (15) | 0.0670 (2) | 0.0449 (6) | |
| H11 | 0.2445 | 0.7055 | −0.0107 | 0.054* | |
| C12 | 0.4597 (3) | 0.77448 (14) | 0.2190 (2) | 0.0395 (5) | |
| H12 | 0.5287 | 0.8207 | 0.2484 | 0.047* | |
| C13 | 0.4358 (3) | 0.71018 (13) | 0.29379 (18) | 0.0350 (5) | |
| H13 | 0.4853 | 0.7138 | 0.3714 | 0.042* | |
| C14 | 0.0108 (3) | 0.17267 (14) | 0.7293 (2) | 0.0473 (6) | |
| H14A | 0.1255 | 0.1566 | 0.7732 | 0.071* | |
| H14B | −0.0397 | 0.1261 | 0.6828 | 0.071* | |
| H14C | −0.0701 | 0.1886 | 0.7805 | 0.071* | |
| H2 | 0.331 (4) | 0.6240 (12) | 0.472 (2) | 0.080* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Br1 | 0.1005 (3) | 0.0644 (2) | 0.02233 (13) | −0.01755 (16) | 0.01035 (12) | −0.00145 (11) |
| O1 | 0.0749 (12) | 0.0384 (9) | 0.0233 (7) | −0.0087 (8) | 0.0068 (7) | −0.0007 (6) |
| O2 | 0.0711 (11) | 0.0338 (8) | 0.0357 (8) | −0.0121 (8) | 0.0053 (8) | 0.0022 (7) |
| O3 | 0.1248 (17) | 0.0381 (9) | 0.0351 (9) | −0.0254 (10) | 0.0207 (10) | −0.0054 (8) |
| N1 | 0.0502 (12) | 0.0317 (10) | 0.0292 (9) | 0.0001 (8) | 0.0104 (8) | 0.0049 (7) |
| N2 | 0.0560 (12) | 0.0280 (9) | 0.0282 (9) | −0.0011 (9) | 0.0123 (8) | 0.0047 (7) |
| N3 | 0.0509 (12) | 0.0379 (10) | 0.0394 (10) | 0.0030 (9) | 0.0122 (9) | 0.0087 (8) |
| C1 | 0.0411 (12) | 0.0296 (10) | 0.0269 (10) | 0.0031 (9) | 0.0082 (9) | 0.0025 (8) |
| C2 | 0.0386 (12) | 0.0318 (11) | 0.0234 (9) | 0.0049 (9) | 0.0043 (8) | 0.0006 (8) |
| C3 | 0.0373 (12) | 0.0300 (11) | 0.0313 (10) | 0.0017 (9) | 0.0062 (9) | 0.0005 (9) |
| C4 | 0.0412 (13) | 0.0364 (12) | 0.0296 (10) | 0.0030 (10) | 0.0105 (9) | 0.0059 (9) |
| C5 | 0.0477 (13) | 0.0427 (13) | 0.0215 (10) | −0.0004 (10) | 0.0078 (9) | −0.0016 (9) |
| C6 | 0.0511 (14) | 0.0339 (11) | 0.0279 (10) | −0.0022 (10) | 0.0079 (9) | −0.0036 (9) |
| C7 | 0.0523 (14) | 0.0302 (11) | 0.0309 (11) | −0.0003 (10) | 0.0089 (10) | 0.0000 (9) |
| C8 | 0.0502 (14) | 0.0349 (12) | 0.0296 (10) | −0.0024 (10) | 0.0100 (10) | 0.0013 (9) |
| C9 | 0.0390 (12) | 0.0307 (11) | 0.0290 (10) | 0.0036 (9) | 0.0123 (9) | 0.0016 (8) |
| C10 | 0.0545 (15) | 0.0368 (12) | 0.0306 (11) | −0.0033 (11) | 0.0059 (10) | −0.0002 (9) |
| C11 | 0.0582 (16) | 0.0452 (14) | 0.0301 (11) | 0.0021 (12) | 0.0042 (10) | 0.0042 (10) |
| C12 | 0.0425 (13) | 0.0334 (12) | 0.0437 (12) | −0.0004 (10) | 0.0108 (10) | 0.0014 (10) |
| C13 | 0.0401 (12) | 0.0361 (12) | 0.0295 (10) | 0.0031 (9) | 0.0080 (9) | 0.0001 (9) |
| C14 | 0.0624 (16) | 0.0335 (12) | 0.0482 (14) | −0.0057 (11) | 0.0158 (12) | 0.0047 (11) |
Geometric parameters (Å, °)
| Br1—C5 | 1.895 (2) | C4—C5 | 1.386 (3) |
| O1—C2 | 1.356 (2) | C4—H4 | 0.9300 |
| O1—H1 | 0.8200 | C5—C6 | 1.363 (3) |
| O2—C3 | 1.360 (3) | C6—H6 | 0.9300 |
| O2—C14 | 1.421 (3) | C7—H7 | 0.9300 |
| O3—C8 | 1.207 (3) | C8—C9 | 1.505 (3) |
| N1—C7 | 1.275 (3) | C9—C10 | 1.385 (3) |
| N1—N2 | 1.375 (2) | C9—C13 | 1.386 (3) |
| N2—C8 | 1.353 (3) | C10—C11 | 1.381 (3) |
| N2—H2 | 0.889 (10) | C10—H10 | 0.9300 |
| N3—C11 | 1.330 (3) | C11—H11 | 0.9300 |
| N3—C12 | 1.336 (3) | C12—C13 | 1.381 (3) |
| C1—C2 | 1.394 (3) | C12—H12 | 0.9300 |
| C1—C6 | 1.397 (3) | C13—H13 | 0.9300 |
| C1—C7 | 1.454 (3) | C14—H14A | 0.9600 |
| C2—C3 | 1.409 (3) | C14—H14B | 0.9600 |
| C3—C4 | 1.380 (3) | C14—H14C | 0.9600 |
| C2—O1—H1 | 109.5 | N1—C7—H7 | 119.4 |
| C3—O2—C14 | 117.41 (17) | C1—C7—H7 | 119.4 |
| C7—N1—N2 | 117.18 (18) | O3—C8—N2 | 122.6 (2) |
| C8—N2—N1 | 117.15 (18) | O3—C8—C9 | 121.04 (19) |
| C8—N2—H2 | 127 (2) | N2—C8—C9 | 116.37 (18) |
| N1—N2—H2 | 116 (2) | C10—C9—C13 | 117.73 (19) |
| C11—N3—C12 | 116.57 (19) | C10—C9—C8 | 116.78 (19) |
| C2—C1—C6 | 119.70 (19) | C13—C9—C8 | 125.48 (19) |
| C2—C1—C7 | 122.19 (18) | C11—C10—C9 | 119.3 (2) |
| C6—C1—C7 | 118.10 (19) | C11—C10—H10 | 120.4 |
| O1—C2—C1 | 122.99 (18) | C9—C10—H10 | 120.4 |
| O1—C2—C3 | 117.65 (18) | N3—C11—C10 | 123.6 (2) |
| C1—C2—C3 | 119.35 (18) | N3—C11—H11 | 118.2 |
| O2—C3—C4 | 124.68 (19) | C10—C11—H11 | 118.2 |
| O2—C3—C2 | 115.10 (18) | N3—C12—C13 | 124.1 (2) |
| C4—C3—C2 | 120.20 (19) | N3—C12—H12 | 118.0 |
| C3—C4—C5 | 119.18 (19) | C13—C12—H12 | 118.0 |
| C3—C4—H4 | 120.4 | C12—C13—C9 | 118.7 (2) |
| C5—C4—H4 | 120.4 | C12—C13—H13 | 120.7 |
| C6—C5—C4 | 121.76 (19) | C9—C13—H13 | 120.7 |
| C6—C5—Br1 | 119.16 (16) | O2—C14—H14A | 109.5 |
| C4—C5—Br1 | 119.06 (16) | O2—C14—H14B | 109.5 |
| C5—C6—C1 | 119.8 (2) | H14A—C14—H14B | 109.5 |
| C5—C6—H6 | 120.1 | O2—C14—H14C | 109.5 |
| C1—C6—H6 | 120.1 | H14A—C14—H14C | 109.5 |
| N1—C7—C1 | 121.2 (2) | H14B—C14—H14C | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···N3i | 0.89 (1) | 2.26 (1) | 3.126 (3) | 166 (3) |
| O1—H1···N1 | 0.82 | 1.93 | 2.643 (2) | 145. |
Symmetry codes: (i) x, −y+3/2, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ2539).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029607/sj2539sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029607/sj2539Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


