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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Sep 24;64(Pt 10):o1996–o1997. doi: 10.1107/S1600536808029619

(E)-N′-(2-Hydr­oxy-4-methoxy­benzyl­idene)isonicotinohydrazide monohydrate

San-Jun Peng a,*, Hai-Yun Hou b
PMCID: PMC2959424  PMID: 21201195

Abstract

The title compound, C14H13N3O3·H2O, was prepared by the reaction of 4-methoxy­salicylaldehyde and isonicotinohydrazide in ethanol. The Schiff base mol­ecule is not planar and has an E configuration with respect to the methyl­idene unit. The dihedral angle between the benzene and pyridine rings is 36.8 (2)°. In the mol­ecule there is an intra­molecular O—H⋯N hydrogen bond involving the hydroxyl substituent and the N atom of the 2-hydr­oxy-4-methoxy­benzyl­idene unit. In the crystal, the mol­ecules are linked through inter­molecular O—H⋯O, O—H⋯N and N—H⋯O hydrogen bonds, forming layers parallel to the bc plane.

Related literature

For bond-length data, see: Allen et al. (1987). For background on the biological properties of hydrazones, see: El-Tabl et al. (2008); Chen et al. (2008); Alvarez et al. (2008); Ventura & Martins (2008); Kalinowski et al. (2008). For related structures, see: Peng & Hou (2008); Shan et al. (2008); Fun et al. (2008); Yehye et al. (2008); Ejsmont et al. (2008); Han et al. (2006); Lu et al. (2008).graphic file with name e-64-o1996-scheme1.jpg

Experimental

Crystal data

  • C14H13N3O3·H2O

  • M r = 289.29

  • Monoclinic, Inline graphic

  • a = 7.299 (4) Å

  • b = 12.537 (6) Å

  • c = 14.808 (7) Å

  • β = 96.281 (8)°

  • V = 1346.9 (11) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.11 mm−1

  • T = 298 (2) K

  • 0.23 × 0.23 × 0.22 mm

Data collection

  • Bruker SMART 1000 CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.976, T max = 0.977

  • 7804 measured reflections

  • 3041 independent reflections

  • 2129 reflections with I > 2σ(I)

  • R int = 0.030

Refinement

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.112

  • S = 1.03

  • 3041 reflections

  • 201 parameters

  • 4 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.25 e Å−3

Data collection: SMART (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029619/su2062sup1.cif

e-64-o1996-sup1.cif (16.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029619/su2062Isup2.hkl

e-64-o1996-Isup2.hkl (149.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯N1 0.82 1.92 2.644 (2) 146
O4—H4B⋯O2i 0.853 (9) 2.072 (10) 2.924 (2) 176 (2)
O4—H4A⋯N3ii 0.861 (9) 1.971 (10) 2.832 (2) 178 (2)
N2—H2⋯O4iii 0.903 (9) 2.024 (11) 2.915 (2) 169 (2)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The corresponding author gratefully acknowledges Changsha University of Science and Technology for research grants.

supplementary crystallographic information

Comment

Hydrazones derived from the reactions of aldehydes with hydrazides show potential biological properties (El-Tabl et al., 2008; Chen et al., 2008; Alvarez et al., 2008; Ventura & Martins, 2008; Kalinowski et al., 2008). In the last few years, a large number of hydrazones have been reported (Peng & Hou, 2008; Shan et al., 2008; Fun et al., 2008; Yehye et al., 2008; Ejsmont et al., 2008). As a continuous study, the crystal structure of the title compound, (I), is reported in this paper.

The molecular structure of compound (I) is illustrated in Fig. 1. It consists of a Schiff base molecule and a water molecule of crystallization. The C7═N1 bond length of 1.276 (2) Å indicates a typical C═N double bond. The Schiff base molecule has an E configuration with respect to the methylidene unit (C7═N1), as observed in similar compounds (Han et al., 2006; Lu et al., 2008). In the molecule there is an intramolecular O-H···N hydrogen bond involving the hydroxyl substituent and the N-atom of the 2-hydroxy-4-methoxybenzylidene moiety (Table 1). The dihedral angle between the benzene and pyridine rings is 36.8 (2)°, indicating the molecule is not planar. The bond lengths are in normal ranges (Allen et al., 1987).

In the crystal structure, symmetry related molecules are linked through intermolecular O—H···O, O—H···N and N—H···O hydrogen bonds (Table 1), forming layers parallel to the bc plane (Fig. 2).

Experimental

4-Methoxysalicylaldehyde (0.152 g, 1 mmol) was dissolved in 95% ethanol (50 ml), then isonicotinohydrazide (0.137 g, 1 mmol) was added slowly to the solution, and the mixture was heated at reflux with continuous stirring for 1 h. The solution was cooled to room temperature, yielding colorless crystallites. Recrystallization from a 95% ethanol yielded block-like single crytals of compound (I).

Refinement

H-atoms H2, H4A and H4B were located in a difference Fourier map and refined isotropically, with N—H, O—H and H···H distances restrained to 0.90 (1), 0.85 (1) and 1.37 (2) Å, respectively, and with Uiso(H) set at 0.08 Å2. The other H atoms were placed in calculated positions and treated as riding atoms with C—H = 0.93 - 0.96 Å, O—H = 0.82 Å, and i>Uiso(H) = 1.2Ueq(C) and 1.5Ueq(O1 and C14).

Figures

Fig. 1.

Fig. 1.

The molecular structure of compound (I), with 30% probability displacement ellipsoids for non-H atoms.

Fig. 2.

Fig. 2.

The crystal packing diagram of compound (I), viewed along the a axis. Hydrogen bonds are shown as dashed lines.

Crystal data

C14H13N3O3·H2O F(000) = 608
Mr = 289.29 Dx = 1.427 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 1237 reflections
a = 7.299 (4) Å θ = 2.4–24.5°
b = 12.537 (6) Å µ = 0.11 mm1
c = 14.808 (7) Å T = 298 K
β = 96.281 (8)° Block, colorless
V = 1346.9 (11) Å3 0.23 × 0.23 × 0.22 mm
Z = 4

Data collection

Bruker SMART 1000 CCD area-detector diffractometer 3041 independent reflections
Radiation source: fine-focus sealed tube 2129 reflections with I > 2σ(I)
graphite Rint = 0.030
ω scans θmax = 27.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001) h = −9→9
Tmin = 0.976, Tmax = 0.977 k = −16→15
7804 measured reflections l = −14→19

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112 H atoms treated by a mixture of independent and constrained refinement
S = 1.03 w = 1/[σ2(Fo2) + (0.0459P)2 + 0.2867P] where P = (Fo2 + 2Fc2)/3
3041 reflections (Δ/σ)max < 0.001
201 parameters Δρmax = 0.18 e Å3
4 restraints Δρmin = −0.25 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.1869 (2) 0.17985 (9) 1.00835 (8) 0.0519 (4)
H1 0.2127 0.1524 0.9611 0.078*
O2 0.3338 (2) 0.13791 (9) 0.75220 (8) 0.0490 (4)
O3 0.07206 (17) 0.08252 (9) 1.30718 (7) 0.0407 (3)
O4 0.3910 (2) 0.75061 (10) 0.34205 (9) 0.0532 (4)
N1 0.29393 (19) 0.02521 (11) 0.90464 (9) 0.0348 (3)
N2 0.3324 (2) −0.02124 (11) 0.82441 (9) 0.0339 (3)
N3 0.3613 (2) −0.13153 (13) 0.50292 (10) 0.0496 (4)
C1 0.2257 (2) −0.00223 (12) 1.05635 (10) 0.0307 (4)
C2 0.1816 (2) 0.10410 (13) 1.07253 (10) 0.0324 (4)
C3 0.1288 (2) 0.13524 (13) 1.15565 (10) 0.0342 (4)
H3 0.0991 0.2061 1.1657 0.041*
C4 0.1205 (2) 0.06050 (13) 1.22317 (10) 0.0312 (4)
C5 0.1644 (2) −0.04517 (13) 1.20894 (11) 0.0370 (4)
H5 0.1592 −0.0953 1.2549 0.044*
C6 0.2154 (2) −0.07474 (13) 1.12659 (11) 0.0382 (4)
H6 0.2442 −0.1458 1.1172 0.046*
C7 0.2761 (2) −0.03892 (14) 0.97002 (11) 0.0355 (4)
H7 0.2962 −0.1114 0.9618 0.043*
C8 0.3435 (2) 0.04041 (13) 0.75139 (10) 0.0335 (4)
C9 0.3600 (2) −0.01964 (12) 0.66533 (10) 0.0317 (4)
C10 0.2673 (3) 0.01868 (15) 0.58540 (11) 0.0417 (4)
H10 0.2037 0.0830 0.5847 0.050*
C11 0.2709 (3) −0.03991 (16) 0.50692 (12) 0.0501 (5)
H11 0.2064 −0.0139 0.4538 0.060*
C12 0.4556 (3) −0.16551 (15) 0.57962 (12) 0.0442 (5)
H12 0.5238 −0.2280 0.5776 0.053*
C13 0.4581 (2) −0.11375 (13) 0.66161 (11) 0.0358 (4)
H13 0.5244 −0.1414 0.7136 0.043*
C14 0.0200 (3) 0.18921 (14) 1.32548 (12) 0.0460 (5)
H14A 0.1199 0.2366 1.3168 0.069*
H14B −0.0087 0.1943 1.3871 0.069*
H14C −0.0864 0.2086 1.2849 0.069*
H2 0.342 (3) −0.0930 (8) 0.8225 (16) 0.080*
H4A 0.380 (3) 0.7860 (16) 0.3910 (10) 0.080*
H4B 0.476 (2) 0.7815 (17) 0.3165 (13) 0.080*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0907 (11) 0.0363 (7) 0.0306 (7) −0.0014 (7) 0.0150 (7) 0.0072 (5)
O2 0.0739 (10) 0.0350 (7) 0.0413 (7) 0.0045 (6) 0.0206 (6) 0.0002 (5)
O3 0.0562 (8) 0.0416 (7) 0.0263 (6) 0.0017 (6) 0.0139 (5) −0.0029 (5)
O4 0.0814 (11) 0.0405 (8) 0.0406 (8) −0.0106 (7) 0.0193 (7) −0.0080 (6)
N1 0.0376 (8) 0.0437 (8) 0.0241 (7) −0.0035 (6) 0.0080 (6) −0.0041 (6)
N2 0.0423 (8) 0.0373 (8) 0.0234 (7) −0.0013 (6) 0.0093 (6) −0.0038 (6)
N3 0.0564 (11) 0.0604 (11) 0.0340 (9) −0.0128 (8) 0.0148 (7) −0.0113 (7)
C1 0.0321 (9) 0.0351 (9) 0.0252 (8) −0.0028 (7) 0.0045 (6) −0.0011 (7)
C2 0.0401 (10) 0.0319 (8) 0.0248 (8) −0.0056 (7) 0.0022 (7) 0.0034 (6)
C3 0.0454 (10) 0.0276 (8) 0.0297 (9) −0.0012 (7) 0.0050 (7) −0.0028 (7)
C4 0.0326 (9) 0.0382 (9) 0.0231 (8) −0.0031 (7) 0.0048 (6) −0.0021 (7)
C5 0.0497 (11) 0.0346 (9) 0.0279 (9) 0.0011 (8) 0.0095 (7) 0.0067 (7)
C6 0.0505 (11) 0.0308 (9) 0.0345 (9) 0.0045 (8) 0.0105 (8) 0.0007 (7)
C7 0.0401 (10) 0.0380 (9) 0.0289 (9) −0.0008 (7) 0.0066 (7) −0.0029 (7)
C8 0.0366 (9) 0.0356 (9) 0.0293 (9) 0.0004 (7) 0.0087 (7) 0.0002 (7)
C9 0.0349 (9) 0.0354 (9) 0.0262 (8) −0.0042 (7) 0.0094 (6) 0.0010 (7)
C10 0.0488 (11) 0.0458 (10) 0.0313 (9) 0.0046 (8) 0.0081 (8) 0.0052 (8)
C11 0.0562 (13) 0.0653 (13) 0.0286 (10) −0.0055 (10) 0.0042 (8) 0.0029 (9)
C12 0.0471 (11) 0.0433 (10) 0.0447 (11) −0.0026 (8) 0.0166 (9) −0.0090 (8)
C13 0.0364 (10) 0.0408 (9) 0.0312 (9) −0.0027 (7) 0.0082 (7) 0.0002 (7)
C14 0.0585 (12) 0.0435 (10) 0.0387 (10) −0.0069 (9) 0.0171 (8) −0.0122 (8)

Geometric parameters (Å, °)

O1—C2 1.3471 (19) C3—H3 0.9300
O1—H1 0.8200 C4—C5 1.385 (2)
O2—C8 1.224 (2) C5—C6 1.365 (2)
O3—C4 1.3583 (19) C5—H5 0.9300
O3—C14 1.425 (2) C6—H6 0.9300
O4—H4A 0.861 (9) C7—H7 0.9300
O4—H4B 0.853 (9) C8—C9 1.496 (2)
N1—C7 1.276 (2) C9—C10 1.383 (2)
N1—N2 1.3791 (19) C9—C13 1.384 (2)
N2—C8 1.339 (2) C10—C11 1.377 (2)
N2—H2 0.903 (9) C10—H10 0.9300
N3—C11 1.329 (3) C11—H11 0.9300
N3—C12 1.332 (2) C12—C13 1.375 (2)
C1—C6 1.390 (2) C12—H12 0.9300
C1—C2 1.398 (2) C13—H13 0.9300
C1—C7 1.444 (2) C14—H14A 0.9600
C2—C3 1.386 (2) C14—H14B 0.9600
C3—C4 1.376 (2) C14—H14C 0.9600
C2—O1—H1 109.5 N1—C7—H7 119.1
C4—O3—C14 117.81 (13) C1—C7—H7 119.1
H4A—O4—H4B 106.4 (17) O2—C8—N2 124.03 (15)
C7—N1—N2 115.77 (14) O2—C8—C9 121.38 (14)
C8—N2—N1 119.21 (14) N2—C8—C9 114.52 (14)
C8—N2—H2 122.6 (15) C10—C9—C13 117.94 (15)
N1—N2—H2 118.1 (15) C10—C9—C8 118.47 (15)
C11—N3—C12 116.82 (15) C13—C9—C8 123.55 (15)
C6—C1—C2 117.59 (14) C11—C10—C9 118.96 (17)
C6—C1—C7 119.62 (15) C11—C10—H10 120.5
C2—C1—C7 122.77 (14) C9—C10—H10 120.5
O1—C2—C3 117.41 (15) N3—C11—C10 123.61 (17)
O1—C2—C1 121.76 (14) N3—C11—H11 118.2
C3—C2—C1 120.83 (14) C10—C11—H11 118.2
C4—C3—C2 119.47 (15) N3—C12—C13 123.90 (18)
C4—C3—H3 120.3 N3—C12—H12 118.1
C2—C3—H3 120.3 C13—C12—H12 118.1
O3—C4—C3 124.30 (15) C12—C13—C9 118.71 (16)
O3—C4—C5 114.93 (14) C12—C13—H13 120.6
C3—C4—C5 120.77 (15) C9—C13—H13 120.6
C6—C5—C4 119.09 (15) O3—C14—H14A 109.5
C6—C5—H5 120.5 O3—C14—H14B 109.5
C4—C5—H5 120.5 H14A—C14—H14B 109.5
C5—C6—C1 122.25 (16) O3—C14—H14C 109.5
C5—C6—H6 118.9 H14A—C14—H14C 109.5
C1—C6—H6 118.9 H14B—C14—H14C 109.5
N1—C7—C1 121.88 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1···N1 0.82 1.92 2.644 (2) 146.
O4—H4B···O2i 0.85 (1) 2.07 (1) 2.924 (2) 176 (2)
O4—H4A···N3ii 0.86 (1) 1.97 (1) 2.832 (2) 178 (2)
N2—H2···O4iii 0.90 (1) 2.02 (1) 2.915 (2) 169 (2)

Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, y+1, z; (iii) x, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2062).

References

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  3. Bruker (2001). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Bruker (2007). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  5. Chen, J., Liu, F., Song, B.-A., Yang, S., Hu, D.-Y., Jin, H.-H., Chen, Z. & Xue, W. (2008). Chin. J. Org. Chem.28, 894–898.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029619/su2062sup1.cif

e-64-o1996-sup1.cif (16.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029619/su2062Isup2.hkl

e-64-o1996-Isup2.hkl (149.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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