Abstract
In the title compound, [CdCl2(C4H6N2S)2], the CdII atom is coordinated by two chlorido ligands and two N atoms of the 2-amino-5-methyl-1,3-thiazole (amtz) ligands in a slightly distorted tetrahedral coordination geometry. Intra- and intermolecular N—H⋯Cl hydrogen bonding stabilizes the crystal structure. A weak S⋯Cl interaction [3.533 (2) Å] is observed between neighboring molecules.
Related literature
For general background, see: Bolos et al. (1999 ▶); Miodragović et al. (2006 ▶); Cini et al. (2007 ▶); Dea et al. (2008 ▶); Shen et al. (2008 ▶). For a related structure, see: Cai et al. (2008 ▶).
Experimental
Crystal data
[CdCl2(C4H6N2S)2]
M r = 411.67
Monoclinic,
a = 8.7100 (17) Å
b = 13.190 (3) Å
c = 12.740 (3) Å
β = 95.19 (3)°
V = 1457.6 (6) Å3
Z = 4
Mo Kα radiation
μ = 2.13 mm−1
T = 293 (2) K
0.40 × 0.25 × 0.23 mm
Data collection
Bruker APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.442, T max = 0.612
7630 measured reflections
2595 independent reflections
2113 reflections with I > 2σ(I)
R int = 0.027
Refinement
R[F 2 > 2σ(F 2)] = 0.027
wR(F 2) = 0.064
S = 0.98
2595 reflections
156 parameters
H-atom parameters constrained
Δρmax = 0.41 e Å−3
Δρmin = −0.39 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808027864/xu2449sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808027864/xu2449Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected geometric parameters (Å, °).
| Cd1—N2 | 2.246 (3) |
| Cd1—N1 | 2.248 (3) |
| Cd1—Cl1 | 2.4181 (10) |
| Cd1—Cl2 | 2.4387 (11) |
| N2—Cd1—N1 | 99.70 (11) |
| N2—Cd1—Cl1 | 106.53 (8) |
| N1—Cd1—Cl1 | 116.26 (8) |
| N2—Cd1—Cl2 | 114.38 (8) |
| N1—Cd1—Cl2 | 107.19 (8) |
| Cl1—Cd1—Cl2 | 112.34 (4) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H3A⋯Cl2 | 0.86 | 2.49 | 3.322 (4) | 164 |
| N3—H3B⋯Cl1i | 0.86 | 2.70 | 3.343 (3) | 133 |
| N4—H4A⋯Cl1 | 0.86 | 2.44 | 3.276 (4) | 165 |
| N4—H4B⋯Cl2ii | 0.86 | 2.52 | 3.325 (3) | 157 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank Dr Shu-Hua Zhang for helpful discussions and acknowledge funding from the National Natural Science Foundation of China (No. 20701010),the Natural Science Foundation of Guangxi Province (No. 0728094) and the Science and Technology Project of the Department of Education of Jiangxi Province [No. (2007)348].
supplementary crystallographic information
Comment
As one of the important S,N-containing-heterocycles, the 1,3-thiazole have often been regarded as a kind of pharmaceutical intermediates and constituents of many biomolecules. Higher pharmacological activities of metal-thiazole complexes than those of thiazole ligands themselves were found, which may depend on their crystal and molecular structures (Bolos et al. 1999; Miodragović et al. 2006; Cini et al. 2007; Dea et al. 2008; Shen et al. 2008). For 2-amino-5-methyl-1,3-thiazole (amtz), however, only one Cu-containing coordination complex with definite crystal structure was reported (Bolos et al. 1999). Herein, our initial goal of this research is to obtain the single crystal using 2-amino-4-thiazole acetic acid (atac) as ligand. When the reaction using the raw materials such as atac and cadmium chloride hydrate [CdCl2.2.5(H2O)] in ethanol-water mixed solvents was carried out under solvothermal condition, however, atac was decarboxylized and then turn into amtz which may bind to CdCl2 to construct the title complex.
Fig. 1 displays the molecular structure of the title compound. The CdII atom is coordinated by two chloride anions and two N atoms of thiazole rings from two amtz ligands in a slightly distorted tetrahedral coordination geometry (Table 1) (Cai et al. 2008). In the crystal structure, the intramolecular N—H···Cl hydrogen bonds (Table 2) stabilize the molecular conformation, and the molecules are interconnected into a two-dimensional network structure via both the intermolecular N—H···Cl hydrogen bonds and weak S···Cl interactions [3.533 (2) Å]. In the crystal packing diagrams, one-dimensional zigzag chains viewed along the a axis and two-dimensional network structures viewed along the c axis can be found in Fig. 2 and in Fig. 3, respectively.
Experimental
2-Amino-4-thiazole acetic acid (0.316 g, 2 mmol) and CdCl2.2.5H2O (0.457 g, 2 mmol) were added into 15 ml ethanol–water (1:1 volume ratio) mixed solvents and stirred for 30 min. The mixture was transferred into a Teflon-lined stainless steel vessel (25 ml). The autoclave was sealed and heated at 383 K for two days, and then autoclave was allowed to cool to room temperature in air. After isolated by filtration, the filtrate was left to stand at room temperature about one week. The brown–yellow block single crystals suitable for X-ray diffraction were obtained with the reaction yield of 30% (based on cadmium).
Refinement
All H atoms bonded to C or N atoms were placed in geometrically calculated positions (N—H, 0.86 Å; C—H, 0.93–0.96 Å) and refined as riding with Uiso(H) = 1.2Ueq(C) and Uiso(H) = 1.5Ueq(N).
Figures
Fig. 1.
The molecular structure of the title complex. Displacement ellipsoids are drawn at the 30% probability level.
Fig. 2.
The crystal packing of the title compound viewed along the a axis in one-dimensional zigzag chain form via both the intermolecular N—H···Cl hydrogen bonds and weak S···Cl interactions which are shown by dashed lines. The intramolecular N—H···Cl hydrogen bonds and all hydrogen atoms not involved in hydrogen bonding were omitted for clarity.
Fig. 3.
The crystal packing of the title compound viewed along the c axis, showing formation of the two-dimensional network structure via both the intermolecular N—H···Cl hydrogen bonds and weak S···Cl interactions which are denoted with dashed lines. All hydrogen atoms not involved in the intermolecular N—H···Cl hydrogen bonds were omitted for clarity.
Crystal data
| [CdCl2(C4H6N2S)2] | F(000) = 808 |
| Mr = 411.67 | Dx = 1.885 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 2595 reflections |
| a = 8.7100 (17) Å | θ = 2.2–25.1° |
| b = 13.190 (3) Å | µ = 2.14 mm−1 |
| c = 12.740 (3) Å | T = 293 K |
| β = 95.19 (3)° | Block, brown-yellow |
| V = 1457.6 (6) Å3 | 0.40 × 0.25 × 0.23 mm |
| Z = 4 |
Data collection
| Bruker APEXII CCD area-detector diffractometer | 2595 independent reflections |
| Radiation source: fine-focus sealed tube | 2113 reflections with I > 2σ(I) |
| graphite | Rint = 0.027 |
| φ and ω scans | θmax = 25.1°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −10→10 |
| Tmin = 0.442, Tmax = 0.612 | k = −15→15 |
| 7630 measured reflections | l = −15→8 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.064 | H-atom parameters constrained |
| S = 0.98 | w = 1/[σ2(Fo2) + (0.0309P)2 + 0.4982P] where P = (Fo2 + 2Fc2)/3 |
| 2595 reflections | (Δ/σ)max < 0.001 |
| 156 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.39 e Å−3 |
Special details
| Experimental. IR (KBr, cm-1): 3431s, 3861s, 3305s, 3205ms, 3133w, 3100w, 2978w, 2947w, 2913w, 2713w, 2346w, 1621vs, 1561m, 1506s, 1438ms, 1380ms, 1357s, 1147m, 1112s, 1033m, 843w, 738m, 703m, 637m, 606m, 478m. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cd1 | 0.79522 (3) | 0.902858 (19) | 0.78981 (2) | 0.04161 (10) | |
| C1 | 0.6219 (4) | 0.7247 (3) | 0.6506 (3) | 0.0454 (9) | |
| C2 | 0.8598 (4) | 0.7492 (3) | 0.6053 (3) | 0.0468 (9) | |
| C3 | 0.4937 (4) | 1.0397 (3) | 0.7472 (3) | 0.0510 (9) | |
| C4 | 0.6202 (4) | 0.6597 (3) | 0.5703 (3) | 0.0535 (10) | |
| H4 | 0.5368 | 0.6187 | 0.5480 | 0.064* | |
| C5 | 0.6514 (5) | 1.0670 (3) | 0.6215 (3) | 0.0621 (11) | |
| C6 | 0.5336 (7) | 1.1274 (4) | 0.5873 (4) | 0.0879 (16) | |
| H6 | 0.5319 | 1.1667 | 0.5267 | 0.105* | |
| C7 | 0.7954 (6) | 1.0484 (4) | 0.5704 (4) | 0.0891 (16) | |
| H7A | 0.7925 | 1.0860 | 0.5057 | 0.134* | |
| H7B | 0.8043 | 0.9774 | 0.5557 | 0.134* | |
| H7C | 0.8824 | 1.0698 | 0.6167 | 0.134* | |
| C8 | 0.4931 (4) | 0.7448 (3) | 0.7171 (3) | 0.0659 (12) | |
| H8A | 0.4101 | 0.6985 | 0.6983 | 0.099* | |
| H8B | 0.4573 | 0.8132 | 0.7058 | 0.099* | |
| H8C | 0.5288 | 0.7359 | 0.7900 | 0.099* | |
| Cl1 | 1.06487 (10) | 0.94872 (8) | 0.79854 (9) | 0.0612 (3) | |
| Cl2 | 0.71199 (11) | 0.86235 (8) | 0.96262 (7) | 0.0551 (3) | |
| N1 | 0.6277 (3) | 1.0170 (2) | 0.7149 (2) | 0.0443 (7) | |
| N2 | 0.7612 (3) | 0.7769 (2) | 0.6713 (2) | 0.0427 (7) | |
| N3 | 0.4407 (3) | 1.0036 (3) | 0.8341 (3) | 0.0649 (9) | |
| H3A | 0.4957 | 0.9620 | 0.8735 | 0.078* | |
| H3B | 0.3512 | 1.0216 | 0.8509 | 0.078* | |
| N4 | 1.0026 (4) | 0.7866 (3) | 0.6046 (3) | 0.0710 (11) | |
| H4A | 1.0348 | 0.8321 | 0.6497 | 0.085* | |
| H4B | 1.0621 | 0.7651 | 0.5591 | 0.085* | |
| S1 | 0.38830 (17) | 1.12403 (11) | 0.66679 (12) | 0.0917 (4) | |
| S2 | 0.79042 (12) | 0.66122 (8) | 0.51342 (8) | 0.0607 (3) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cd1 | 0.03346 (15) | 0.04928 (17) | 0.04276 (17) | −0.00234 (11) | 0.00714 (11) | −0.00173 (12) |
| C1 | 0.041 (2) | 0.041 (2) | 0.052 (2) | −0.0037 (16) | −0.0011 (17) | 0.0042 (18) |
| C2 | 0.050 (2) | 0.043 (2) | 0.048 (2) | −0.0025 (17) | 0.0102 (17) | −0.0039 (17) |
| C3 | 0.043 (2) | 0.047 (2) | 0.062 (3) | 0.0040 (17) | −0.0009 (19) | −0.0053 (19) |
| C4 | 0.048 (2) | 0.048 (2) | 0.062 (3) | −0.0031 (18) | −0.0063 (19) | −0.007 (2) |
| C5 | 0.080 (3) | 0.049 (2) | 0.056 (3) | −0.008 (2) | 0.002 (2) | 0.012 (2) |
| C6 | 0.118 (4) | 0.069 (3) | 0.072 (3) | 0.009 (3) | −0.013 (3) | 0.030 (3) |
| C7 | 0.104 (4) | 0.099 (4) | 0.070 (3) | −0.008 (3) | 0.034 (3) | 0.026 (3) |
| C8 | 0.045 (2) | 0.075 (3) | 0.079 (3) | −0.014 (2) | 0.015 (2) | −0.011 (2) |
| Cl1 | 0.0355 (5) | 0.0727 (7) | 0.0757 (7) | −0.0109 (5) | 0.0062 (5) | −0.0115 (6) |
| Cl2 | 0.0497 (5) | 0.0708 (6) | 0.0466 (5) | 0.0022 (5) | 0.0140 (4) | 0.0077 (5) |
| N1 | 0.0445 (17) | 0.0412 (17) | 0.0470 (18) | −0.0030 (14) | 0.0030 (14) | 0.0039 (14) |
| N2 | 0.0429 (16) | 0.0425 (16) | 0.0436 (16) | −0.0034 (13) | 0.0084 (13) | −0.0036 (14) |
| N3 | 0.0409 (18) | 0.083 (2) | 0.073 (2) | 0.0146 (17) | 0.0172 (17) | 0.008 (2) |
| N4 | 0.059 (2) | 0.078 (2) | 0.081 (3) | −0.0172 (19) | 0.0366 (19) | −0.028 (2) |
| S1 | 0.0823 (9) | 0.0895 (9) | 0.1004 (11) | 0.0353 (7) | −0.0071 (8) | 0.0189 (8) |
| S2 | 0.0642 (7) | 0.0591 (6) | 0.0589 (7) | 0.0000 (5) | 0.0061 (5) | −0.0178 (5) |
Geometric parameters (Å, °)
| Cd1—N2 | 2.246 (3) | C5—C6 | 1.340 (6) |
| Cd1—N1 | 2.248 (3) | C5—N1 | 1.392 (5) |
| Cd1—Cl1 | 2.4181 (10) | C5—C7 | 1.485 (6) |
| Cd1—Cl2 | 2.4387 (11) | C6—S1 | 1.691 (6) |
| C1—C4 | 1.333 (5) | C6—H6 | 0.9300 |
| C1—N2 | 1.399 (4) | C7—H7A | 0.9600 |
| C1—C8 | 1.490 (5) | C7—H7B | 0.9600 |
| C2—N2 | 1.308 (4) | C7—H7C | 0.9600 |
| C2—N4 | 1.338 (4) | C8—H8A | 0.9600 |
| C2—S2 | 1.718 (4) | C8—H8B | 0.9600 |
| C3—N1 | 1.308 (4) | C8—H8C | 0.9600 |
| C3—N3 | 1.326 (5) | N3—H3A | 0.8600 |
| C3—S1 | 1.720 (4) | N3—H3B | 0.8600 |
| C4—S2 | 1.708 (4) | N4—H4A | 0.8600 |
| C4—H4 | 0.9300 | N4—H4B | 0.8600 |
| N2—Cd1—N1 | 99.70 (11) | C5—C7—H7B | 109.5 |
| N2—Cd1—Cl1 | 106.53 (8) | H7A—C7—H7B | 109.5 |
| N1—Cd1—Cl1 | 116.26 (8) | C5—C7—H7C | 109.5 |
| N2—Cd1—Cl2 | 114.38 (8) | H7A—C7—H7C | 109.5 |
| N1—Cd1—Cl2 | 107.19 (8) | H7B—C7—H7C | 109.5 |
| Cl1—Cd1—Cl2 | 112.34 (4) | C1—C8—H8A | 109.5 |
| C4—C1—N2 | 114.2 (3) | C1—C8—H8B | 109.5 |
| C4—C1—C8 | 126.5 (3) | H8A—C8—H8B | 109.5 |
| N2—C1—C8 | 119.3 (3) | C1—C8—H8C | 109.5 |
| N2—C2—N4 | 124.4 (3) | H8A—C8—H8C | 109.5 |
| N2—C2—S2 | 114.6 (3) | H8B—C8—H8C | 109.5 |
| N4—C2—S2 | 121.0 (3) | C3—N1—C5 | 111.5 (3) |
| N1—C3—N3 | 124.6 (3) | C3—N1—Cd1 | 125.7 (3) |
| N1—C3—S1 | 113.8 (3) | C5—N1—Cd1 | 122.7 (3) |
| N3—C3—S1 | 121.5 (3) | C2—N2—C1 | 110.4 (3) |
| C1—C4—S2 | 111.6 (3) | C2—N2—Cd1 | 125.8 (2) |
| C1—C4—H4 | 124.2 | C1—N2—Cd1 | 123.4 (2) |
| S2—C4—H4 | 124.2 | C3—N3—H3A | 120.0 |
| C6—C5—N1 | 113.0 (4) | C3—N3—H3B | 120.0 |
| C6—C5—C7 | 127.4 (4) | H3A—N3—H3B | 120.0 |
| N1—C5—C7 | 119.5 (4) | C2—N4—H4A | 120.0 |
| C5—C6—S1 | 112.5 (4) | C2—N4—H4B | 120.0 |
| C5—C6—H6 | 123.8 | H4A—N4—H4B | 120.0 |
| S1—C6—H6 | 123.8 | C6—S1—C3 | 89.2 (2) |
| C5—C7—H7A | 109.5 | C4—S2—C2 | 89.09 (18) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3A···Cl2 | 0.86 | 2.49 | 3.322 (4) | 164. |
| N3—H3B···Cl1i | 0.86 | 2.70 | 3.343 (3) | 133. |
| N4—H4A···Cl1 | 0.86 | 2.44 | 3.276 (4) | 165. |
| N4—H4B···Cl2ii | 0.86 | 2.52 | 3.325 (3) | 157. |
Symmetry codes: (i) x−1, y, z; (ii) x+1/2, −y+3/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU2449).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808027864/xu2449sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808027864/xu2449Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



