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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Oct 22;64(Pt 11):o2158. doi: 10.1107/S1600536808031176

1,3-Bis(4-chloro­phen­yl)-4,5-diethoxy­imidazolidine

Yu Wan a, Xiu-mei Chen a, Pu Zhang a, Hui Wu a,*
PMCID: PMC2959530  PMID: 21581018

Abstract

In the mol­ecule of the title compound, C19H22Cl2N2O2, the two benzene rings are oriented at a dihedral angle of 3.70 (3)°. The five-membered ring adopts an envelope conformation.

Related literature

For general background, see: Bunnage & Owen (2008); Weinreb (2007); Jin (2006); Farnia et al. (1997); Reed & Schleyer (1988). For bond-length data, see: Allen et al. (1987).graphic file with name e-64-o2158-scheme1.jpg

Experimental

Crystal data

  • C19H22Cl2N2O2

  • M r = 381.29

  • Monoclinic, Inline graphic

  • a = 10.928 (2) Å

  • b = 11.123 (2) Å

  • c = 16.006 (3) Å

  • β = 94.480 (15)°

  • V = 1939.6 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.35 mm−1

  • T = 296 (2) K

  • 0.50 × 0.42 × 0.22 mm

Data collection

  • Siemens P4 diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.843, T max = 0.926

  • 4160 measured reflections

  • 3609 independent reflections

  • 1867 reflections with I > 2σ(I)

  • R int = 0.010

  • 3 standard reflections every 97 reflections intensity decay: 1.1%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.072

  • S = 0.94

  • 3609 reflections

  • 227 parameters

  • H-atom parameters constrained

  • Δρmax = 0.12 e Å−3

  • Δρmin = −0.13 e Å−3

Data collection: XSCANS (Siemens, 1996); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808031176/hk2538sup1.cif

e-64-o2158-sup1.cif (20.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031176/hk2538Isup2.hkl

e-64-o2158-Isup2.hkl (181KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

We are grateful to the National Science Foundation of China (grant No. 20772103), the Natural Science Foundation in Jiangsu Province (grant No. BK 2007028) and the Surpassing Project in Jiangsu Province (grant No. QL 200607) for financial support.

supplementary crystallographic information

Comment

Imidazoles are commonly utilized substructures within the pharmaceutical industry, as these heterocycles impart unique physical and biological properties to compounds of interest (Bunnage & Owen, 2008; Weinreb, 2007; Jin, 2006). Furthermore, molecules containing anomeric effect in N—C—N system influences many structural and electronic properties (Farnia et al., 1997; Reed & Schleyer, 1988). We report herein the synthesis and crystal structure of the title compound.

In the molecule of the title compound (Fig. 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. Rings A (C1-C6) and C (C10-C15) are, of course, planar and the dihedral angle between them is 3.70 (3)°. So, they are also nearly coplanar. Ring B (N1/N2/C7-C9) is not planar, and adopts envelope conformation with C8 atom displaced by 0.336 (3) Å from the plane of the other ring atoms.

Experimental

The title compound was simply prepared by the reaction of 4-chloro- benzaldehyde (2.0 mmol) with glyoxal(1.0 mmol) and formaldehyde (1.0 mmol) in ethanol (3.0 ml) at 273–278 K without catalyst for 40 h (yield; 81%). Single crystals suitable for X-ray analysis were obtained from an ethanol solution by slow evaporation.

Refinement

H atoms were positioned geometrically, with C-H = 0.93, 0.98, 0.97 and 0.96 Å for aromatic, methine, methylene and methyl H, respectively, and constrained to ride on their parent atoms with Uiso(H) = xUeq(C), where x = 1.5 for methyl H and x = 1.2 for all other H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Crystal data

C19H22Cl2N2O2 F(000) = 800
Mr = 381.29 Dx = 1.306 Mg m3
Monoclinic, P21/c Melting point = 445–446 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 10.928 (2) Å Cell parameters from 28 reflections
b = 11.123 (2) Å θ = 4.9–14.4°
c = 16.006 (3) Å µ = 0.35 mm1
β = 94.480 (15)° T = 296 K
V = 1939.6 (6) Å3 Block, colorless
Z = 4 0.50 × 0.42 × 0.22 mm

Data collection

Siemens P4 diffractometer 1867 reflections with I > 2σ(I)
Radiation source: normal-focus sealed tube Rint = 0.010
graphite θmax = 25.5°, θmin = 1.9°
ω scans h = 0→13
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) k = 0→13
Tmin = 0.843, Tmax = 0.926 l = −19→19
4160 measured reflections 3 standard reflections every 97 reflections
3609 independent reflections intensity decay: 1.1%

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039 H-atom parameters constrained
wR(F2) = 0.072 w = 1/[σ2(Fo2) + (0.0226P)2] where P = (Fo2 + 2Fc2)/3
S = 0.94 (Δ/σ)max = 0.001
3609 reflections Δρmax = 0.12 e Å3
227 parameters Δρmin = −0.13 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0056 (4)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.87517 (6) −0.07126 (6) 0.61089 (5) 0.0967 (3)
Cl2 0.24717 (6) 0.95415 (6) 0.65343 (4) 0.0981 (3)
O1 0.92261 (12) 0.55731 (13) 0.57515 (9) 0.0596 (4)
O2 0.66798 (11) 0.63533 (12) 0.42946 (8) 0.0586 (4)
N1 0.73769 (14) 0.43816 (15) 0.56395 (10) 0.0544 (5)
N2 0.63188 (15) 0.61147 (15) 0.57001 (10) 0.0547 (5)
C1 0.69410 (19) 0.23950 (19) 0.61290 (13) 0.0576 (6)
H1 0.6210 0.2672 0.6320 0.069*
C2 0.7256 (2) 0.1204 (2) 0.62321 (13) 0.0628 (6)
H2 0.6740 0.0681 0.6493 0.075*
C3 0.8326 (2) 0.07892 (19) 0.59514 (14) 0.0601 (6)
C4 0.9094 (2) 0.1553 (2) 0.55715 (14) 0.0669 (7)
H4 0.9820 0.1264 0.5380 0.080*
C5 0.8794 (2) 0.2745 (2) 0.54722 (13) 0.0605 (6)
H5 0.9325 0.3263 0.5222 0.073*
C6 0.76964 (18) 0.31880 (19) 0.57444 (12) 0.0481 (5)
C7 0.81176 (18) 0.52749 (18) 0.52714 (12) 0.0520 (6)
H7 0.8327 0.4979 0.4724 0.062*
C8 0.72362 (17) 0.63322 (18) 0.51288 (12) 0.0510 (5)
H8 0.7660 0.7093 0.5262 0.061*
C9 0.62711 (17) 0.48661 (18) 0.59411 (12) 0.0517 (6)
H9A 0.6272 0.4782 0.6544 0.062*
H9B 0.5548 0.4474 0.5677 0.062*
C10 0.54049 (18) 0.6921 (2) 0.58676 (12) 0.0482 (5)
C11 0.44177 (18) 0.6556 (2) 0.63022 (13) 0.0587 (6)
H11 0.4354 0.5755 0.6458 0.070*
C12 0.3535 (2) 0.7359 (2) 0.65051 (14) 0.0666 (7)
H12 0.2884 0.7096 0.6798 0.080*
C13 0.3603 (2) 0.8540 (2) 0.62809 (13) 0.0613 (6)
C14 0.4559 (2) 0.8919 (2) 0.58461 (13) 0.0651 (7)
H14 0.4610 0.9723 0.5692 0.078*
C15 0.54485 (19) 0.8117 (2) 0.56344 (13) 0.0615 (6)
H15 0.6087 0.8385 0.5331 0.074*
C16 0.9094 (2) 0.5868 (2) 0.66041 (14) 0.0808 (8)
H16A 0.8870 0.5157 0.6908 0.097*
H16B 0.8450 0.6462 0.6639 0.097*
C17 1.0262 (2) 0.6350 (3) 0.69752 (16) 0.1104 (10)
H17A 1.0183 0.6549 0.7552 0.166*
H17B 1.0473 0.7058 0.6676 0.166*
H17C 1.0894 0.5757 0.6941 0.166*
C18 0.7407 (2) 0.6940 (2) 0.37180 (15) 0.0825 (8)
H18A 0.8159 0.6493 0.3665 0.099*
H18B 0.7624 0.7741 0.3919 0.099*
C19 0.6704 (2) 0.7017 (3) 0.29006 (15) 0.1278 (12)
H19A 0.7187 0.7417 0.2509 0.192*
H19B 0.5962 0.7461 0.2957 0.192*
H19C 0.6504 0.6221 0.2701 0.192*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0971 (5) 0.0588 (4) 0.1362 (6) 0.0063 (4) 0.0216 (5) −0.0038 (4)
Cl2 0.0926 (5) 0.0975 (6) 0.1076 (6) 0.0270 (4) 0.0303 (4) −0.0125 (4)
O1 0.0454 (9) 0.0792 (11) 0.0551 (10) −0.0086 (8) 0.0086 (7) −0.0004 (9)
O2 0.0550 (9) 0.0737 (10) 0.0472 (9) −0.0135 (8) 0.0046 (7) 0.0102 (8)
N1 0.0432 (10) 0.0544 (12) 0.0678 (12) −0.0047 (10) 0.0177 (9) 0.0051 (10)
N2 0.0517 (11) 0.0586 (12) 0.0557 (11) 0.0029 (10) 0.0168 (9) 0.0101 (10)
C1 0.0485 (13) 0.0586 (15) 0.0666 (16) −0.0042 (12) 0.0103 (12) −0.0005 (13)
C2 0.0601 (15) 0.0582 (16) 0.0709 (16) −0.0117 (13) 0.0111 (13) 0.0019 (13)
C3 0.0608 (15) 0.0520 (15) 0.0669 (16) −0.0025 (13) 0.0020 (13) −0.0105 (13)
C4 0.0563 (15) 0.0714 (18) 0.0742 (17) 0.0052 (14) 0.0118 (13) −0.0077 (15)
C5 0.0559 (15) 0.0652 (17) 0.0620 (16) −0.0039 (13) 0.0150 (12) 0.0014 (13)
C6 0.0417 (12) 0.0543 (15) 0.0484 (13) −0.0077 (12) 0.0037 (11) −0.0028 (11)
C7 0.0491 (13) 0.0641 (15) 0.0434 (13) −0.0069 (12) 0.0065 (11) −0.0005 (12)
C8 0.0480 (13) 0.0579 (14) 0.0474 (14) −0.0078 (12) 0.0064 (11) 0.0014 (12)
C9 0.0435 (13) 0.0579 (15) 0.0541 (14) −0.0041 (11) 0.0057 (11) 0.0031 (12)
C10 0.0454 (13) 0.0590 (15) 0.0399 (13) −0.0031 (12) 0.0024 (11) 0.0001 (11)
C11 0.0515 (14) 0.0584 (15) 0.0675 (15) −0.0062 (13) 0.0126 (12) 0.0010 (13)
C12 0.0521 (15) 0.0777 (18) 0.0721 (17) −0.0063 (14) 0.0176 (13) −0.0044 (15)
C13 0.0596 (15) 0.0689 (17) 0.0558 (15) 0.0058 (14) 0.0077 (12) −0.0100 (13)
C14 0.0762 (17) 0.0588 (16) 0.0605 (15) 0.0058 (14) 0.0066 (14) 0.0058 (13)
C15 0.0601 (15) 0.0659 (17) 0.0605 (15) −0.0007 (13) 0.0167 (12) 0.0082 (13)
C16 0.0719 (17) 0.117 (2) 0.0537 (16) −0.0122 (16) 0.0074 (14) −0.0114 (15)
C17 0.086 (2) 0.150 (3) 0.090 (2) −0.005 (2) −0.0247 (17) −0.016 (2)
C18 0.0868 (18) 0.0938 (19) 0.0683 (18) −0.0140 (16) 0.0153 (16) 0.0235 (15)
C19 0.131 (3) 0.195 (3) 0.0564 (18) −0.041 (2) −0.0022 (18) 0.041 (2)

Geometric parameters (Å, °)

Cl1—C3 1.747 (2) C9—H9A 0.9700
Cl2—C13 1.736 (2) C9—H9B 0.9700
O1—C16 1.422 (2) C10—C15 1.384 (3)
O1—C7 1.422 (2) C10—C11 1.389 (2)
O2—C18 1.423 (2) C11—C12 1.372 (3)
O2—C8 1.424 (2) C11—H11 0.9300
N1—C6 1.380 (2) C12—C13 1.365 (3)
N1—C7 1.437 (2) C12—H12 0.9300
N1—C9 1.440 (2) C13—C14 1.366 (3)
N2—C10 1.384 (2) C14—C15 1.381 (3)
N2—C8 1.429 (2) C14—H14 0.9300
N2—C9 1.443 (2) C15—H15 0.9300
C1—C2 1.376 (3) C16—C17 1.466 (3)
C1—C6 1.385 (2) C16—H16A 0.9700
C1—H1 0.9300 C16—H16B 0.9700
C2—C3 1.366 (3) C17—H17A 0.9600
C2—H2 0.9300 C17—H17B 0.9600
C3—C4 1.369 (3) C17—H17C 0.9600
C4—C5 1.372 (3) C18—C19 1.467 (3)
C4—H4 0.9300 C18—H18A 0.9700
C5—C6 1.397 (3) C18—H18B 0.9700
C5—H5 0.9300 C19—H19A 0.9600
C7—C8 1.526 (3) C19—H19B 0.9600
C7—H7 0.9800 C19—H19C 0.9600
C8—H8 0.9800
C16—O1—C7 115.22 (15) H9A—C9—H9B 109.1
C18—O2—C8 113.37 (16) N2—C10—C15 122.01 (19)
C6—N1—C7 124.76 (17) N2—C10—C11 120.6 (2)
C6—N1—C9 122.01 (16) C15—C10—C11 117.4 (2)
C7—N1—C9 113.14 (16) C12—C11—C10 121.1 (2)
C10—N2—C8 124.56 (17) C12—C11—H11 119.4
C10—N2—C9 121.99 (17) C10—C11—H11 119.4
C8—N2—C9 112.07 (16) C13—C12—C11 120.7 (2)
C2—C1—C6 121.0 (2) C13—C12—H12 119.7
C2—C1—H1 119.5 C11—C12—H12 119.7
C6—C1—H1 119.5 C12—C13—C14 119.4 (2)
C3—C2—C1 119.9 (2) C12—C13—Cl2 120.12 (19)
C3—C2—H2 120.1 C14—C13—Cl2 120.5 (2)
C1—C2—H2 120.1 C13—C14—C15 120.4 (2)
C2—C3—C4 120.4 (2) C13—C14—H14 119.8
C2—C3—Cl1 120.04 (18) C15—C14—H14 119.8
C4—C3—Cl1 119.48 (18) C14—C15—C10 121.0 (2)
C3—C4—C5 120.1 (2) C14—C15—H15 119.5
C3—C4—H4 119.9 C10—C15—H15 119.5
C5—C4—H4 119.9 O1—C16—C17 108.81 (19)
C4—C5—C6 120.5 (2) O1—C16—H16A 109.9
C4—C5—H5 119.8 C17—C16—H16A 109.9
C6—C5—H5 119.8 O1—C16—H16B 109.9
N1—C6—C1 120.87 (19) C17—C16—H16B 109.9
N1—C6—C5 121.08 (19) H16A—C16—H16B 108.3
C1—C6—C5 118.0 (2) C16—C17—H17A 109.5
O1—C7—N1 115.03 (16) C16—C17—H17B 109.5
O1—C7—C8 113.71 (17) H17A—C17—H17B 109.5
N1—C7—C8 103.01 (15) C16—C17—H17C 109.5
O1—C7—H7 108.3 H17A—C17—H17C 109.5
N1—C7—H7 108.3 H17B—C17—H17C 109.5
C8—C7—H7 108.3 O2—C18—C19 109.0 (2)
O2—C8—N2 109.47 (16) O2—C18—H18A 109.9
O2—C8—C7 111.79 (16) C19—C18—H18A 109.9
N2—C8—C7 103.88 (16) O2—C18—H18B 109.9
O2—C8—H8 110.5 C19—C18—H18B 109.9
N2—C8—H8 110.5 H18A—C18—H18B 108.3
C7—C8—H8 110.5 C18—C19—H19A 109.5
N1—C9—N2 102.80 (16) C18—C19—H19B 109.5
N1—C9—H9A 111.2 H19A—C19—H19B 109.5
N2—C9—H9A 111.2 C18—C19—H19C 109.5
N1—C9—H9B 111.2 H19A—C19—H19C 109.5
N2—C9—H9B 111.2 H19B—C19—H19C 109.5
C6—C1—C2—C3 −0.1 (3) C9—N2—C8—C7 −21.7 (2)
C1—C2—C3—C4 0.4 (3) O1—C7—C8—O2 138.53 (16)
C1—C2—C3—Cl1 178.08 (16) N1—C7—C8—O2 −96.31 (17)
C2—C3—C4—C5 0.2 (3) O1—C7—C8—N2 −103.52 (18)
Cl1—C3—C4—C5 −177.52 (17) N1—C7—C8—N2 21.63 (19)
C3—C4—C5—C6 −1.0 (3) C6—N1—C9—N2 179.82 (17)
C7—N1—C6—C1 178.06 (18) C7—N1—C9—N2 3.1 (2)
C9—N1—C6—C1 1.7 (3) C10—N2—C9—N1 179.41 (16)
C7—N1—C6—C5 −1.4 (3) C8—N2—C9—N1 12.3 (2)
C9—N1—C6—C5 −177.81 (18) C8—N2—C10—C15 −14.3 (3)
C2—C1—C6—N1 179.80 (19) C9—N2—C10—C15 −179.81 (19)
C2—C1—C6—C5 −0.7 (3) C8—N2—C10—C11 167.52 (18)
C4—C5—C6—N1 −179.23 (19) C9—N2—C10—C11 2.0 (3)
C4—C5—C6—C1 1.3 (3) N2—C10—C11—C12 177.02 (19)
C16—O1—C7—N1 −50.9 (2) C15—C10—C11—C12 −1.2 (3)
C16—O1—C7—C8 67.6 (2) C10—C11—C12—C13 0.3 (3)
C6—N1—C7—O1 −68.0 (2) C11—C12—C13—C14 0.4 (3)
C9—N1—C7—O1 108.68 (19) C11—C12—C13—Cl2 179.42 (17)
C6—N1—C7—C8 167.75 (18) C12—C13—C14—C15 0.0 (3)
C9—N1—C7—C8 −15.6 (2) Cl2—C13—C14—C15 −179.05 (16)
C18—O2—C8—N2 160.47 (17) C13—C14—C15—C10 −1.0 (3)
C18—O2—C8—C7 −85.0 (2) N2—C10—C15—C14 −176.62 (19)
C10—N2—C8—O2 −68.9 (2) C11—C10—C15—C14 1.6 (3)
C9—N2—C8—O2 97.87 (19) C7—O1—C16—C17 −170.4 (2)
C10—N2—C8—C7 171.58 (17) C8—O2—C18—C19 −174.5 (2)

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2538).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Bunnage, M. E. & Owen, D. R. (2008). Curr. Opin. Drug Discov. Dev.11, 480–486. [PubMed]
  3. Farnia, S. M. F., Kakanejadifard, A. & Soudbar, D. (1997). Tetrahedron, 53, 2557–2564.
  4. Jin, Z. (2006). Nat. Prod. Rep.23, 464–498. [DOI] [PubMed]
  5. Reed, A. E. & Schleyer, D. V. R. (1988). Inorg. Chem.27, 3969–3987.
  6. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Siemens (1996). XSCANS Siemens AXS Inc., Madison, Wisconsin, USA.
  9. Weinreb, S. M. (2007). Nat. Prod. Rep.24, 931–948. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808031176/hk2538sup1.cif

e-64-o2158-sup1.cif (20.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031176/hk2538Isup2.hkl

e-64-o2158-Isup2.hkl (181KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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