Abstract
In the title compound, C6H6N5 +·Cl−, the pyridinium and tetrazole rings are essentially coplanar. The pyridine N atoms are protonated. In the crystal structure, molecules are connected via N—H⋯Cl, C—H⋯Cl, C—H⋯N and N—H⋯N hydrogen bonds into layers that are parallel to the (001) plane. There are two crystallographically independent molecules in the asymmetric unit which are located on mirror planes.
Related literature
For related literature on tetrazole derivatives, see: Dai & Fu (2008 ▶); Wang et al. (2005 ▶); Wen (2008 ▶); Xiong et al. (2002 ▶).
Experimental
Crystal data
C6H6N5 +·Cl−
M r = 183.61
Orthorhombic,
a = 16.375 (3) Å
b = 15.313 (3) Å
c = 6.5176 (13) Å
V = 1634.3 (5) Å3
Z = 8
Mo Kα radiation
μ = 0.41 mm−1
T = 298 (2) K
0.25 × 0.20 × 0.18 mm
Data collection
Rigaku Mercury2 diffractometer
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.910, T max = 0.938
16127 measured reflections
2041 independent reflections
1511 reflections with I > 2σ(I)
R int = 0.076
Refinement
R[F 2 > 2σ(F 2)] = 0.062
wR(F 2) = 0.148
S = 1.14
2041 reflections
145 parameters
H-atom parameters constrained
Δρmax = 0.32 e Å−3
Δρmin = −0.23 e Å−3
Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808032649/nc2115sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808032649/nc2115Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N9—H9A⋯Cl2 | 0.86 | 2.14 | 3.001 (3) | 177 |
| N10—H10A⋯Cl1 | 0.86 | 2.33 | 3.088 (3) | 147 |
| N2—H2⋯Cl2 | 0.86 | 2.22 | 3.050 (4) | 163 |
| N5—H5A⋯Cl1i | 0.86 | 2.29 | 3.049 (3) | 147 |
| N5—H5A⋯N1 | 0.86 | 2.55 | 2.881 (4) | 104 |
| N10—H10A⋯N6 | 0.86 | 2.52 | 2.858 (4) | 105 |
| C9—H9⋯Cl2 | 0.93 | 2.64 | 3.545 (4) | 165 |
| C3—H3⋯N8ii | 0.93 | 2.60 | 3.329 (5) | 136 |
| C6—H6⋯N6i | 0.93 | 2.38 | 3.260 (5) | 159 |
| C10—H10⋯Cl1iii | 0.93 | 2.67 | 3.596 (4) | 174 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
This work was supported by a start-up grant from Southeast University to Professor Ren-Gen Xiong.
supplementary crystallographic information
Comment
Tetrazole derivatives have found wide range of applications in coordination chemistry because of their multiple coordination modes as ligands to metal ions and for the construction of novel metal-organic frameworks (Wang et al., 2005; Xiong et al., 2002; Wen, 2008). In our ongoing investigations in this field we report here the crystal of 2-(2H-tetrazol-5-yl)pyridine-1-ium chloride (Fig.1).
In the crystal structure there are two crystallographically independent molecules, both of them located on mirror planes. Therefore, the benzene and tetrazole rings in both independent molecules are essentially planar. The geometric parameters of the tetrazole rings are comparable to those in related molecules (Wang et al., 2005; Dai & Fu, 2008).
The crystal structure is stabilized by N—H···Cl, C—H···Cl, C—H···N and N—H···N hydrogen bonding. The different H bonding interactions connect the molecules into layers, that are parallel to the (0 0 1) plane (Table 1, Fig. 2).
Experimental
Picolinonitrile (30 mmol), NaN 3 (45 mmol), NH4Cl (33 mmol) and DMF (50 ml) were added in a flask under nitrogen atmosphere and the mixture stirred at 110°C for 20 h. The resulting solution was then poured into ice-water (100 ml), and a white solid was obtained after adding HCl (6 M) till pH=6. The precipitate was filtered and washed with distilled water. Colourless block-shaped crystals suitable for X-ray analysis were obtained from the crude product by slow evaporation of the solvent from an ethanol/HCl (50:1 v/v) solution.
Refinement
All H atoms were located in difference map but were positioned with idealized geometry with C—H = 0.93 Å and N—H = 0.86 Å and were refined isotropic with Uiso(H) = 1.2Ueq(C or N) using a riding model.
Figures
Fig. 1.
A view of the title compound with the atomic numbering scheme. Displacement ellipsoids were drawn at the 30% probability level.
Fig. 2.
The crystal packing of the title compound viewed along the c axis showing the two-dimensionnal hydrogen bondings network.
Crystal data
| C6H6N5+·Cl− | F(000) = 752 |
| Mr = 183.61 | Dx = 1.492 Mg m−3 |
| Orthorhombic, Pbcm | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2c 2b | Cell parameters from 2986 reflections |
| a = 16.375 (3) Å | θ = 2.5–27.5° |
| b = 15.313 (3) Å | µ = 0.42 mm−1 |
| c = 6.5176 (13) Å | T = 298 K |
| V = 1634.3 (5) Å3 | Block, colourless |
| Z = 8 | 0.25 × 0.20 × 0.18 mm |
Data collection
| Rigaku Mercury2 diffractometer | 2041 independent reflections |
| Radiation source: fine-focus sealed tube | 1511 reflections with I > 2σ(I) |
| graphite | Rint = 0.077 |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 2.5° |
| ω scans | h = −21→21 |
| Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −19→19 |
| Tmin = 0.910, Tmax = 0.938 | l = −8→8 |
| 16127 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.062 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.148 | H-atom parameters constrained |
| S = 1.14 | w = 1/[σ2(Fo2) + (0.0616P)2 + 0.4596P] where P = (Fo2 + 2Fc2)/3 |
| 2041 reflections | (Δ/σ)max < 0.001 |
| 145 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C9 | 0.0640 (2) | 0.4651 (2) | 0.2500 | 0.0494 (10) | |
| H9 | 0.0803 | 0.5232 | 0.2500 | 0.059* | |
| N6 | 0.26721 (19) | 0.3543 (2) | 0.2500 | 0.0476 (8) | |
| N7 | 0.33865 (17) | 0.3973 (2) | 0.2500 | 0.0466 (8) | |
| N8 | 0.3269 (2) | 0.4819 (3) | 0.2500 | 0.0568 (9) | |
| N9 | 0.24511 (18) | 0.4938 (2) | 0.2500 | 0.0480 (8) | |
| H9A | 0.2202 | 0.5432 | 0.2500 | 0.058* | |
| C7 | 0.2096 (2) | 0.4149 (2) | 0.2500 | 0.0399 (8) | |
| C8 | 0.1215 (2) | 0.3988 (2) | 0.2500 | 0.0373 (8) | |
| N10 | 0.09641 (17) | 0.31585 (19) | 0.2500 | 0.0422 (8) | |
| H10A | 0.1325 | 0.2750 | 0.2500 | 0.051* | |
| C12 | 0.0174 (2) | 0.2938 (3) | 0.2500 | 0.0516 (10) | |
| H12 | 0.0025 | 0.2352 | 0.2500 | 0.062* | |
| C11 | −0.0412 (3) | 0.3566 (3) | 0.2500 | 0.0619 (12) | |
| H11 | −0.0962 | 0.3414 | 0.2500 | 0.074* | |
| C10 | −0.0181 (2) | 0.4434 (3) | 0.2500 | 0.0566 (11) | |
| H10 | −0.0575 | 0.4871 | 0.2500 | 0.068* | |
| N4 | 0.4116 (2) | 0.8572 (2) | 0.2500 | 0.0671 (11) | |
| N3 | 0.3635 (2) | 0.7880 (2) | 0.2500 | 0.0663 (10) | |
| N2 | 0.2886 (2) | 0.8188 (2) | 0.2500 | 0.0615 (10) | |
| H2 | 0.2462 | 0.7856 | 0.2500 | 0.074* | |
| N1 | 0.2836 (2) | 0.9048 (2) | 0.2500 | 0.0591 (10) | |
| N5 | 0.33937 (17) | 1.0833 (2) | 0.2500 | 0.0414 (7) | |
| H5A | 0.2880 | 1.0714 | 0.2500 | 0.050* | |
| C1 | 0.3619 (2) | 0.9270 (2) | 0.2500 | 0.0422 (9) | |
| C2 | 0.3931 (2) | 1.0162 (2) | 0.2500 | 0.0373 (8) | |
| C3 | 0.4760 (2) | 1.0352 (2) | 0.2500 | 0.0475 (9) | |
| H3 | 0.5145 | 0.9905 | 0.2500 | 0.057* | |
| C4 | 0.5005 (2) | 1.1221 (3) | 0.2500 | 0.0533 (10) | |
| H4 | 0.5559 | 1.1355 | 0.2500 | 0.064* | |
| C5 | 0.4444 (3) | 1.1881 (3) | 0.2500 | 0.0546 (11) | |
| H5 | 0.4611 | 1.2461 | 0.2500 | 0.066* | |
| C6 | 0.3620 (2) | 1.1670 (3) | 0.2500 | 0.0486 (9) | |
| H6 | 0.3228 | 1.2110 | 0.2500 | 0.058* | |
| Cl1 | 0.15729 (5) | 0.12495 (6) | 0.2500 | 0.0456 (3) | |
| Cl2 | 0.16485 (7) | 0.66996 (7) | 0.2500 | 0.0764 (4) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C9 | 0.048 (2) | 0.0309 (19) | 0.070 (3) | 0.0017 (17) | 0.000 | 0.000 |
| N6 | 0.0410 (18) | 0.0434 (19) | 0.059 (2) | 0.0073 (14) | 0.000 | 0.000 |
| N7 | 0.0324 (16) | 0.052 (2) | 0.055 (2) | 0.0076 (14) | 0.000 | 0.000 |
| N8 | 0.0363 (17) | 0.061 (2) | 0.073 (3) | −0.0044 (15) | 0.000 | 0.000 |
| N9 | 0.0340 (16) | 0.0395 (18) | 0.070 (2) | −0.0027 (13) | 0.000 | 0.000 |
| C7 | 0.041 (2) | 0.0356 (19) | 0.043 (2) | −0.0021 (16) | 0.000 | 0.000 |
| C8 | 0.0345 (18) | 0.0339 (18) | 0.044 (2) | −0.0007 (14) | 0.000 | 0.000 |
| N10 | 0.0408 (17) | 0.0346 (16) | 0.051 (2) | 0.0027 (13) | 0.000 | 0.000 |
| C12 | 0.043 (2) | 0.043 (2) | 0.069 (3) | −0.0116 (18) | 0.000 | 0.000 |
| C11 | 0.036 (2) | 0.059 (3) | 0.091 (4) | −0.0024 (19) | 0.000 | 0.000 |
| C10 | 0.044 (2) | 0.047 (2) | 0.078 (3) | 0.0132 (19) | 0.000 | 0.000 |
| N4 | 0.047 (2) | 0.040 (2) | 0.114 (3) | 0.0033 (16) | 0.000 | 0.000 |
| N3 | 0.053 (2) | 0.0384 (18) | 0.107 (3) | 0.0054 (17) | 0.000 | 0.000 |
| N2 | 0.046 (2) | 0.0358 (18) | 0.103 (3) | −0.0036 (16) | 0.000 | 0.000 |
| N1 | 0.0431 (19) | 0.0336 (18) | 0.100 (3) | 0.0011 (14) | 0.000 | 0.000 |
| N5 | 0.0351 (16) | 0.0371 (16) | 0.0520 (19) | 0.0015 (13) | 0.000 | 0.000 |
| C1 | 0.0372 (19) | 0.0374 (19) | 0.052 (2) | 0.0022 (16) | 0.000 | 0.000 |
| C2 | 0.0327 (18) | 0.0386 (19) | 0.041 (2) | 0.0023 (15) | 0.000 | 0.000 |
| C3 | 0.038 (2) | 0.047 (2) | 0.058 (3) | 0.0049 (17) | 0.000 | 0.000 |
| C4 | 0.043 (2) | 0.053 (2) | 0.064 (3) | −0.0091 (19) | 0.000 | 0.000 |
| C5 | 0.055 (3) | 0.039 (2) | 0.071 (3) | −0.0112 (19) | 0.000 | 0.000 |
| C6 | 0.052 (2) | 0.035 (2) | 0.059 (3) | 0.0049 (17) | 0.000 | 0.000 |
| Cl1 | 0.0394 (5) | 0.0403 (5) | 0.0572 (6) | −0.0005 (4) | 0.000 | 0.000 |
| Cl2 | 0.0564 (7) | 0.0340 (5) | 0.1387 (12) | −0.0022 (5) | 0.000 | 0.000 |
Geometric parameters (Å, °)
| C9—C8 | 1.384 (5) | N4—N3 | 1.320 (5) |
| C9—C10 | 1.385 (5) | N4—C1 | 1.343 (5) |
| C9—H9 | 0.9300 | N3—N2 | 1.315 (4) |
| N6—C7 | 1.324 (5) | N2—N1 | 1.320 (4) |
| N6—N7 | 1.343 (4) | N2—H2 | 0.8600 |
| N7—N8 | 1.309 (5) | N1—C1 | 1.326 (5) |
| N8—N9 | 1.352 (4) | N5—C6 | 1.335 (5) |
| N9—C7 | 1.340 (4) | N5—C2 | 1.351 (4) |
| N9—H9A | 0.8600 | N5—H5A | 0.8600 |
| C7—C8 | 1.464 (5) | C1—C2 | 1.459 (5) |
| C8—N10 | 1.334 (4) | C2—C3 | 1.389 (5) |
| N10—C12 | 1.337 (4) | C3—C4 | 1.390 (5) |
| N10—H10A | 0.8600 | C3—H3 | 0.9300 |
| C12—C11 | 1.359 (6) | C4—C5 | 1.365 (5) |
| C12—H12 | 0.9300 | C4—H4 | 0.9300 |
| C11—C10 | 1.382 (6) | C5—C6 | 1.387 (5) |
| C11—H11 | 0.9300 | C5—H5 | 0.9300 |
| C10—H10 | 0.9300 | C6—H6 | 0.9300 |
| C8—C9—C10 | 119.0 (4) | N3—N4—C1 | 106.1 (3) |
| C8—C9—H9 | 120.5 | N2—N3—N4 | 105.5 (3) |
| C10—C9—H9 | 120.5 | N3—N2—N1 | 114.6 (3) |
| C7—N6—N7 | 106.0 (3) | N3—N2—H2 | 122.7 |
| N8—N7—N6 | 111.0 (3) | N1—N2—H2 | 122.7 |
| N7—N8—N9 | 106.2 (3) | N2—N1—C1 | 101.2 (3) |
| C7—N9—N8 | 108.0 (3) | C6—N5—C2 | 123.3 (3) |
| C7—N9—H9A | 126.0 | C6—N5—H5A | 118.4 |
| N8—N9—H9A | 126.0 | C2—N5—H5A | 118.4 |
| N6—C7—N9 | 108.9 (3) | N1—C1—N4 | 112.5 (3) |
| N6—C7—C8 | 125.7 (3) | N1—C1—C2 | 125.3 (3) |
| N9—C7—C8 | 125.4 (3) | N4—C1—C2 | 122.2 (3) |
| N10—C8—C9 | 119.3 (3) | N5—C2—C3 | 118.5 (3) |
| N10—C8—C7 | 117.6 (3) | N5—C2—C1 | 118.9 (3) |
| C9—C8—C7 | 123.1 (3) | C3—C2—C1 | 122.5 (3) |
| C8—N10—C12 | 122.6 (3) | C2—C3—C4 | 118.8 (3) |
| C8—N10—H10A | 118.7 | C2—C3—H3 | 120.6 |
| C12—N10—H10A | 118.7 | C4—C3—H3 | 120.6 |
| N10—C12—C11 | 120.3 (4) | C5—C4—C3 | 121.0 (4) |
| N10—C12—H12 | 119.8 | C5—C4—H4 | 119.5 |
| C11—C12—H12 | 119.8 | C3—C4—H4 | 119.5 |
| C12—C11—C10 | 119.1 (4) | C4—C5—C6 | 118.8 (4) |
| C12—C11—H11 | 120.4 | C4—C5—H5 | 120.6 |
| C10—C11—H11 | 120.4 | C6—C5—H5 | 120.6 |
| C11—C10—C9 | 119.8 (4) | N5—C6—C5 | 119.6 (4) |
| C11—C10—H10 | 120.1 | N5—C6—H6 | 120.2 |
| C9—C10—H10 | 120.1 | C5—C6—H6 | 120.2 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N9—H9A···Cl2 | 0.86 | 2.14 | 3.001 (3) | 177 |
| N10—H10A···Cl1 | 0.86 | 2.33 | 3.088 (3) | 147 |
| N2—H2···Cl2 | 0.86 | 2.22 | 3.050 (4) | 163 |
| N5—H5A···Cl1i | 0.86 | 2.29 | 3.049 (3) | 147 |
| N5—H5A···N1 | 0.86 | 2.55 | 2.881 (4) | 104 |
| N10—H10A···N6 | 0.86 | 2.52 | 2.858 (4) | 105 |
| C9—H9···Cl2 | 0.93 | 2.64 | 3.545 (4) | 165 |
| C3—H3···N8ii | 0.93 | 2.60 | 3.329 (5) | 136 |
| C6—H6···N6i | 0.93 | 2.38 | 3.260 (5) | 159 |
| C10—H10···Cl1iii | 0.93 | 2.67 | 3.596 (4) | 174 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, y+1/2, −z+1/2; (iii) −x, y+1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NC2115).
References
- Dai, W. & Fu, D.-W. (2008). Acta Cryst. E64, o1444. [DOI] [PMC free article] [PubMed]
- Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Wang, X.-S., Tang, Y.-Z., Huang, X.-F., Qu, Z.-R., Che, C.-M., Chan, C. W. H. & Xiong, R.-G. (2005). Inorg. Chem.44, 5278–5285. [DOI] [PubMed]
- Wen, X.-C. (2008). Acta Cryst. E64, m768. [DOI] [PMC free article] [PubMed]
- Xiong, R.-G., Xue, X., Zhao, H., You, X.-Z., Abrahams, B. F. & Xue, Z.-L. (2002). Angew. Chem. Int. Ed.41, 3800–3803. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808032649/nc2115sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808032649/nc2115Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


