Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Oct 31;64(Pt 11):o2232. doi: 10.1107/S1600536808031164

2-Amino-5-(1H-tetra­zol-5-yl)pyridinium chloride

Jing Dai a, Xiao-Chun Wen a,*
PMCID: PMC2959660  PMID: 21581086

Abstract

In the title salt, C6H7N6 +·Cl, there are two organic cations with similar conformations and two chloride anions in the asymmetric unit. The pyridine and tetra­zole rings are essentially coplanar in each cation, with dihedral angles of 4.94 (15) and 5.41 (14)°. The pyridine N atoms are protonated. The crystal packing is stabilized by N—H⋯N and N—H⋯Cl hydrogen bonds, forming an infinite sheets parallel to the (101).

Related literature

For uses of tetra­zole derivatives, see: Dai & Fu (2008); Wang et al. (2005); Wen (2008); Xiong et al. (2002).graphic file with name e-64-o2232-scheme1.jpg

Experimental

Crystal data

  • C6H7N6 +·Cl

  • M r = 198.63

  • Monoclinic, Inline graphic

  • a = 14.043 (3) Å

  • b = 13.238 (3) Å

  • c = 9.5766 (19) Å

  • β = 109.35 (3)°

  • V = 1679.7 (6) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.41 mm−1

  • T = 298 (2) K

  • 0.45 × 0.25 × 0.20 mm

Data collection

  • Rigaku Mercury2 diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) T min = 0.859, T max = 0.920

  • 16820 measured reflections

  • 3855 independent reflections

  • 3123 reflections with I > 2σ(I)

  • R int = 0.034

Refinement

  • R[F 2 > 2σ(F 2)] = 0.048

  • wR(F 2) = 0.125

  • S = 1.11

  • 3855 reflections

  • 235 parameters

  • H-atom parameters constrained

  • Δρmax = 0.28 e Å−3

  • Δρmin = −0.23 e Å−3

Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808031164/bh2196sup1.cif

e-64-o2232-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031164/bh2196Isup2.hkl

e-64-o2232-Isup2.hkl (189KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯N5i 0.86 2.59 3.317 (2) 143
N1—H1⋯N6i 0.86 2.04 2.894 (2) 171
N2—H2A⋯N5i 0.86 2.15 2.972 (3) 160
N7—H7⋯N11ii 0.86 2.57 3.304 (2) 144
N7—H7⋯N12ii 0.86 2.06 2.913 (2) 169
N8—H8A⋯N11ii 0.86 2.20 3.024 (3) 160
N2—H2B⋯Cl1iii 0.86 2.36 3.2187 (18) 177
N3—H3A⋯Cl2i 0.86 2.17 3.0047 (19) 165
N8—H8B⋯Cl2iv 0.86 2.39 3.2432 (18) 172
N9—H9A⋯Cl1v 0.86 2.18 3.0031 (18) 160

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

This work was supported by a start-up grant from Southeast University to Professor Ren-Gen Xiong.

supplementary crystallographic information

Comment

Tetrazole derivatives have found a wide range of applications in coordination chemistry because of their multiple coordination modes as ligands to metal ions, and for the construction of novel metal-organic frameworks (Wang et al., 2005; Xiong et al., 2002; Wen, 2008; Dai & Fu, 2008). We report here the crystal structure of the title salt (Fig. 1).

The title compound contains two organic cations with similar conformation and two Cl- ions in the asymmetric unit. The pyridine N atoms are protonated. The pyridine rings and tetrazole rings are nearly coplanar and are twisted from each other by a dihedral angle of only 4.94 (15) and 5.41 (14)°. The packing of ions is stabilized by N—H···N and N—H···Cl hydrogen bonds, to form an infinite two-dimensional layers parallel to the (1 0 1) plane in the crystal (Table 1 and Fig. 2).

Experimental

2-Amino-5-cyanopyridine (30 mmol), NaN 3 (45 mmol), NH4Cl (33 mmol) and DMF (50 ml) were mixed in a flask under nitrogen atmosphere, and the mixture stirred at 383 K for 20 h. The resulting solution was then poured into ice-water (100 ml), and a white solid was obtained after adding hydrochloric acid (6 M) until pH=6. The precipitate was filtered and washed with distilled water. Colourless block-shaped crystals suitable for X-ray analysis were obtained from the crude product by slow evaporation of an ethanol/hydrochloric acid (50:1 v/v) solution.

Refinement

All H atoms were fixed geometrically and treated as riding to their carrier atoms, with C—H = 0.93 Å (aromatic) and N—H = 0.86 Å, and with Uiso(H) = 1.2Ueq(carrier atom).

Figures

Fig. 1.

Fig. 1.

A view of the title compound with the atomic numbering scheme. Displacement ellipsoids were drawn at the 30% probability level.

Fig. 2.

Fig. 2.

The crystal packing of the title compound viewed along the c axis, showing the two-dimensional hydrogen bonds network. H atoms not involved in hydrogen bonding (dashed lines) have been omitted for clarity.

Crystal data

C6H7N6+·Cl F(000) = 816
Mr = 198.63 Dx = 1.571 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3690 reflections
a = 14.043 (3) Å θ = 2.3–27.5°
b = 13.238 (3) Å µ = 0.41 mm1
c = 9.5766 (19) Å T = 298 K
β = 109.35 (3)° Block, colorless
V = 1679.7 (6) Å3 0.45 × 0.25 × 0.20 mm
Z = 8

Data collection

Rigaku Mercury2 diffractometer 3855 independent reflections
Radiation source: fine-focus sealed tube 3123 reflections with I > 2σ(I)
graphite Rint = 0.034
Detector resolution: 13.6612 pixels mm-1 θmax = 27.5°, θmin = 2.7°
ω scans h = −18→18
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) k = −17→17
Tmin = 0.859, Tmax = 0.920 l = −12→12
16820 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125 H-atom parameters constrained
S = 1.12 w = 1/[σ2(Fo2) + (0.0556P)2 + 0.4684P] where P = (Fo2 + 2Fc2)/3
3855 reflections (Δ/σ)max < 0.001
235 parameters Δρmax = 0.28 e Å3
0 restraints Δρmin = −0.23 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.56207 (12) 0.65987 (12) 0.17350 (18) 0.0344 (4)
H1 0.5639 0.7245 0.1662 0.041*
N3 0.36346 (13) 0.52444 (13) 0.37792 (19) 0.0368 (4)
H3A 0.3600 0.5892 0.3818 0.044*
C1 0.62505 (14) 0.60404 (14) 0.1236 (2) 0.0313 (4)
N2 0.68458 (13) 0.64965 (13) 0.0611 (2) 0.0413 (4)
H2A 0.6831 0.7143 0.0523 0.050*
H2B 0.7247 0.6146 0.0292 0.050*
N6 0.40734 (13) 0.37577 (12) 0.33322 (19) 0.0382 (4)
N4 0.31050 (14) 0.45963 (13) 0.4305 (2) 0.0428 (4)
C6 0.42266 (14) 0.47298 (14) 0.3184 (2) 0.0310 (4)
N5 0.33724 (14) 0.37053 (13) 0.4030 (2) 0.0430 (4)
C4 0.49237 (14) 0.51714 (13) 0.2516 (2) 0.0304 (4)
C2 0.62316 (14) 0.49827 (14) 0.1406 (2) 0.0333 (4)
H2 0.6657 0.4574 0.1086 0.040*
C3 0.55896 (15) 0.45611 (14) 0.2039 (2) 0.0336 (4)
H3 0.5587 0.3864 0.2160 0.040*
C5 0.49636 (15) 0.61909 (14) 0.2344 (2) 0.0337 (4)
H5 0.4537 0.6610 0.2646 0.040*
N7 0.92034 (13) 0.39582 (12) 0.30105 (18) 0.0364 (4)
H7 0.9131 0.4604 0.2998 0.044*
N9 1.13591 (12) 0.26242 (13) 0.12521 (19) 0.0367 (4)
H9A 1.1409 0.3272 0.1246 0.044*
N8 0.80738 (13) 0.38416 (13) 0.4302 (2) 0.0422 (4)
H8A 0.8043 0.4490 0.4319 0.051*
H8B 0.7726 0.3485 0.4708 0.051*
C7 0.86565 (14) 0.33931 (15) 0.3650 (2) 0.0329 (4)
N10 1.19013 (14) 0.19768 (13) 0.0747 (2) 0.0425 (4)
N12 1.08698 (13) 0.11357 (12) 0.15986 (19) 0.0374 (4)
C12 1.07262 (14) 0.21051 (14) 0.1769 (2) 0.0311 (4)
N11 1.16049 (14) 0.10833 (13) 0.0959 (2) 0.0429 (4)
C10 1.00037 (14) 0.25408 (14) 0.2397 (2) 0.0304 (4)
C9 0.94263 (15) 0.19202 (14) 0.3023 (2) 0.0339 (4)
H9 0.9504 0.1222 0.3025 0.041*
C11 0.98593 (16) 0.35597 (14) 0.2389 (2) 0.0363 (4)
H11 1.0211 0.3983 0.1957 0.044*
C8 0.87624 (15) 0.23312 (15) 0.3618 (2) 0.0337 (4)
H8 0.8378 0.1915 0.4004 0.040*
Cl1 0.84188 (4) 0.97883 (4) 0.45292 (7) 0.04632 (17)
Cl2 0.65611 (4) 0.24380 (4) 0.05567 (6) 0.04478 (17)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0407 (9) 0.0214 (8) 0.0500 (10) 0.0034 (7) 0.0270 (8) 0.0030 (7)
N3 0.0440 (10) 0.0261 (8) 0.0491 (10) −0.0020 (7) 0.0273 (8) −0.0008 (7)
C1 0.0332 (10) 0.0274 (9) 0.0362 (10) 0.0024 (7) 0.0157 (8) 0.0009 (7)
N2 0.0483 (11) 0.0305 (9) 0.0589 (11) 0.0027 (7) 0.0363 (9) 0.0028 (8)
N6 0.0456 (10) 0.0267 (8) 0.0507 (10) −0.0021 (7) 0.0270 (8) 0.0009 (7)
N4 0.0518 (11) 0.0327 (9) 0.0561 (11) −0.0061 (8) 0.0343 (9) −0.0012 (8)
C6 0.0334 (10) 0.0265 (9) 0.0358 (10) −0.0001 (7) 0.0152 (8) −0.0004 (7)
N5 0.0529 (11) 0.0299 (9) 0.0581 (11) −0.0034 (8) 0.0346 (9) −0.0008 (8)
C4 0.0313 (9) 0.0259 (9) 0.0368 (10) −0.0001 (7) 0.0149 (8) 0.0011 (7)
C2 0.0341 (10) 0.0284 (9) 0.0419 (11) 0.0044 (8) 0.0186 (8) −0.0002 (8)
C3 0.0368 (10) 0.0238 (9) 0.0422 (11) 0.0017 (7) 0.0158 (8) −0.0001 (8)
C5 0.0358 (10) 0.0281 (9) 0.0437 (11) 0.0035 (8) 0.0218 (8) 0.0018 (8)
N7 0.0468 (10) 0.0227 (8) 0.0486 (10) 0.0051 (7) 0.0279 (8) 0.0046 (7)
N9 0.0410 (10) 0.0264 (8) 0.0510 (10) 0.0036 (7) 0.0265 (8) 0.0027 (7)
N8 0.0473 (11) 0.0334 (9) 0.0586 (11) 0.0043 (8) 0.0345 (9) 0.0034 (8)
C7 0.0328 (10) 0.0327 (10) 0.0353 (10) 0.0024 (8) 0.0143 (8) 0.0018 (8)
N10 0.0473 (11) 0.0343 (9) 0.0569 (11) 0.0066 (8) 0.0320 (9) 0.0036 (8)
N12 0.0431 (10) 0.0293 (8) 0.0477 (10) 0.0038 (7) 0.0256 (8) 0.0015 (7)
C12 0.0348 (10) 0.0266 (9) 0.0339 (9) 0.0021 (7) 0.0142 (8) 0.0033 (7)
N11 0.0489 (11) 0.0344 (10) 0.0560 (11) 0.0059 (8) 0.0316 (9) 0.0010 (8)
C10 0.0328 (10) 0.0282 (9) 0.0325 (9) 0.0027 (7) 0.0139 (8) 0.0015 (7)
C9 0.0375 (10) 0.0236 (9) 0.0431 (11) 0.0009 (7) 0.0168 (9) 0.0031 (8)
C11 0.0427 (11) 0.0296 (10) 0.0446 (11) 0.0017 (8) 0.0253 (9) 0.0037 (8)
C8 0.0344 (10) 0.0298 (10) 0.0409 (10) −0.0010 (8) 0.0178 (8) 0.0040 (8)
Cl1 0.0567 (3) 0.0300 (3) 0.0626 (4) −0.0067 (2) 0.0336 (3) −0.0052 (2)
Cl2 0.0502 (3) 0.0282 (3) 0.0624 (4) 0.0046 (2) 0.0273 (3) 0.0040 (2)

Geometric parameters (Å, °)

N1—C1 1.355 (2) N7—C7 1.355 (2)
N1—C5 1.356 (2) N7—C11 1.358 (2)
N1—H1 0.8600 N7—H7 0.8600
N3—N4 1.338 (2) N9—N10 1.339 (2)
N3—C6 1.340 (2) N9—C12 1.341 (2)
N3—H3A 0.8600 N9—H9A 0.8600
C1—N2 1.325 (2) N8—C7 1.323 (2)
C1—C2 1.411 (3) N8—H8A 0.8600
N2—H2A 0.8600 N8—H8B 0.8600
N2—H2B 0.8600 C7—C8 1.415 (3)
N6—C6 1.320 (2) N10—N11 1.292 (2)
N6—N5 1.362 (2) N12—C12 1.318 (2)
N4—N5 1.291 (2) N12—N11 1.365 (2)
C6—C4 1.457 (2) C12—C10 1.459 (2)
C4—C5 1.363 (3) C10—C11 1.364 (3)
C4—C3 1.421 (3) C10—C9 1.419 (3)
C2—C3 1.361 (3) C9—C8 1.357 (3)
C2—H2 0.9300 C9—H9 0.9300
C3—H3 0.9300 C11—H11 0.9300
C5—H5 0.9300 C8—H8 0.9300
C1—N1—C5 123.42 (16) C7—N7—C11 123.49 (17)
C1—N1—H1 118.3 C7—N7—H7 118.3
C5—N1—H1 118.3 C11—N7—H7 118.3
N4—N3—C6 109.55 (16) N10—N9—C12 109.34 (16)
N4—N3—H3A 125.2 N10—N9—H9A 125.3
C6—N3—H3A 125.2 C12—N9—H9A 125.3
N2—C1—N1 119.62 (17) C7—N8—H8A 120.0
N2—C1—C2 122.91 (17) C7—N8—H8B 120.0
N1—C1—C2 117.47 (16) H8A—N8—H8B 120.0
C1—N2—H2A 120.0 N8—C7—N7 119.82 (18)
C1—N2—H2B 120.0 N8—C7—C8 122.80 (18)
H2A—N2—H2B 120.0 N7—C7—C8 117.36 (17)
C6—N6—N5 105.81 (16) N11—N10—N9 106.13 (15)
N5—N4—N3 105.89 (15) C12—N12—N11 105.95 (16)
N6—C6—N3 107.67 (16) N12—C12—N9 107.80 (16)
N6—C6—C4 126.56 (17) N12—C12—C10 126.32 (17)
N3—C6—C4 125.76 (17) N9—C12—C10 125.87 (17)
N4—N5—N6 111.08 (16) N10—N11—N12 110.78 (16)
C5—C4—C3 117.77 (17) C11—C10—C9 118.05 (17)
C5—C4—C6 120.74 (17) C11—C10—C12 120.76 (17)
C3—C4—C6 121.49 (16) C9—C10—C12 121.19 (17)
C3—C2—C1 119.91 (17) C8—C9—C10 120.89 (17)
C3—C2—H2 120.0 C8—C9—H9 119.6
C1—C2—H2 120.0 C10—C9—H9 119.6
C2—C3—C4 120.90 (17) N7—C11—C10 120.20 (17)
C2—C3—H3 119.5 N7—C11—H11 119.9
C4—C3—H3 119.5 C10—C11—H11 119.9
N1—C5—C4 120.49 (17) C9—C8—C7 119.93 (17)
N1—C5—H5 119.8 C9—C8—H8 120.0
C4—C5—H5 119.8 C7—C8—H8 120.0
C5—N1—C1—N2 177.74 (19) C11—N7—C7—N8 176.37 (19)
C5—N1—C1—C2 −1.8 (3) C11—N7—C7—C8 −1.9 (3)
C6—N3—N4—N5 0.0 (2) C12—N9—N10—N11 −0.2 (2)
N5—N6—C6—N3 0.1 (2) N11—N12—C12—N9 −0.2 (2)
N5—N6—C6—C4 179.20 (18) N11—N12—C12—C10 179.35 (18)
N4—N3—C6—N6 0.0 (2) N10—N9—C12—N12 0.3 (2)
N4—N3—C6—C4 −179.15 (19) N10—N9—C12—C10 −179.30 (18)
N3—N4—N5—N6 0.1 (2) N9—N10—N11—N12 0.1 (2)
C6—N6—N5—N4 −0.1 (2) C12—N12—N11—N10 0.1 (2)
N6—C6—C4—C5 175.7 (2) N12—C12—C10—C11 −173.8 (2)
N3—C6—C4—C5 −5.4 (3) N9—C12—C10—C11 5.6 (3)
N6—C6—C4—C3 −4.9 (3) N12—C12—C10—C9 5.7 (3)
N3—C6—C4—C3 173.99 (19) N9—C12—C10—C9 −174.82 (19)
N2—C1—C2—C3 −178.97 (19) C11—C10—C9—C8 −1.1 (3)
N1—C1—C2—C3 0.6 (3) C12—C10—C9—C8 179.35 (18)
C1—C2—C3—C4 0.9 (3) C7—N7—C11—C10 −0.6 (3)
C5—C4—C3—C2 −1.2 (3) C9—C10—C11—N7 2.1 (3)
C6—C4—C3—C2 179.48 (19) C12—C10—C11—N7 −178.31 (18)
C1—N1—C5—C4 1.6 (3) C10—C9—C8—C7 −1.4 (3)
C3—C4—C5—N1 0.0 (3) N8—C7—C8—C9 −175.3 (2)
C6—C4—C5—N1 179.36 (18) N7—C7—C8—C9 2.9 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···N5i 0.86 2.59 3.317 (2) 143
N1—H1···N6i 0.86 2.04 2.894 (2) 171
N2—H2A···N5i 0.86 2.15 2.972 (3) 160
N7—H7···N11ii 0.86 2.57 3.304 (2) 144
N7—H7···N12ii 0.86 2.06 2.913 (2) 169
N8—H8A···N11ii 0.86 2.20 3.024 (3) 160
N2—H2B···Cl1iii 0.86 2.36 3.2187 (18) 177
N3—H3A···Cl2i 0.86 2.17 3.0047 (19) 165
N8—H8B···Cl2iv 0.86 2.39 3.2432 (18) 172
N9—H9A···Cl1v 0.86 2.18 3.0031 (18) 160

Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+2, y+1/2, −z+1/2; (iii) x, −y+3/2, z−1/2; (iv) x, −y+1/2, z+1/2; (v) −x+2, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BH2196).

References

  1. Dai, W. & Fu, D.-W. (2008). Acta Cryst. E64, o1444. [DOI] [PMC free article] [PubMed]
  2. Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Wang, X.-S., Tang, Y.-Z., Huang, X.-F., Qu, Z.-R., Che, C.-M., Chan, P. W. H. & Xiong, R.-G. (2005). Inorg. Chem.44, 5278–5285. [DOI] [PubMed]
  5. Wen, X.-C. (2008). Acta Cryst. E64, m1033. [DOI] [PMC free article] [PubMed]
  6. Xiong, R.-G., Xue, X., Zhao, H., You, X.-Z., Abrahams, B. F. & Xue, Z. (2002). Angew. Chem. Int. Ed.41, 3800–3803. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808031164/bh2196sup1.cif

e-64-o2232-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031164/bh2196Isup2.hkl

e-64-o2232-Isup2.hkl (189KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES