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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Oct 31;64(Pt 11):o2239. doi: 10.1107/S1600536808033485

1-(3-Amino-1H-inden-2-yl)ethanone

Dong-Yue Hu a, Zhi-Rong Qu a,*
PMCID: PMC2959692  PMID: 21581093

Abstract

The title compound, C11H11NO, was synthesized by the reaction of 2-(bromo­meth­yl)benzonitrile and acetyl­acetone in the presence of KOH. In the crystal packing, mol­ecules are linked by inter­molecular N—H⋯O hydrogen bonds into chains running parallel to the b axis. Centrosymmetrically-related chains inter­act further through weak C—H⋯π inter­actions.

Related literature

For the crystal structures of related compounds, see: Choi et al. (1999); Fu & Zhao (2007).graphic file with name e-64-o2239-scheme1.jpg

Experimental

Crystal data

  • C11H11NO

  • M r = 173.21

  • Monoclinic, Inline graphic

  • a = 8.1794 (4) Å

  • b = 10.6905 (5) Å

  • c = 10.5602 (6) Å

  • β = 93.783 (8)°

  • V = 921.39 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 293 (2) K

  • 0.25 × 0.16 × 0.14 mm

Data collection

  • Rigaku SCXmini diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) T min = 0.980, T max = 0.989

  • 9369 measured reflections

  • 2108 independent reflections

  • 1385 reflections with I > 2σ(I)

  • R int = 0.049

Refinement

  • R[F 2 > 2σ(F 2)] = 0.060

  • wR(F 2) = 0.171

  • S = 1.04

  • 2108 reflections

  • 119 parameters

  • H-atom parameters constrained

  • Δρmax = 0.21 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808033485/rz2252sup1.cif

e-64-o2239-sup1.cif (14.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033485/rz2252Isup2.hkl

e-64-o2239-Isup2.hkl (103.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C7–C11/C13 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1A⋯O2 0.86 2.17 2.766 (2) 126
N1—H1B⋯O2i 0.86 2.09 2.924 (2) 164
C2—H2BCg1ii 0.97 2.77 3.631 (2) 148

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by a Start-up Grant from Southeast University to ZRQ.

supplementary crystallographic information

Comment

In recent years, the synthesis and characterization of new ligands containing amino donor groups has received considerable attention due to the potential applications in coordination chemistry (Choi et al., 1999; Fu & Zhao, 2007). We report here the crystal structure of the title compound, which was obtained by the reaction of o-(bromomethyl)benzonitrile and acetylacetone in the presence of KOH.

In the molecule of the title compound (Fig. 1), the five-membered ring formed through the reaction is planar, and the geometric parameters are in the usual ranges. The molecular conformation is stabilized by an intramolecular N—H···O hydrogen bond (Table 1). In the crystal structure (Fig. 2), molecules are connected by intermolecular N—H···O hydrogen bonds into chains running parallel to the b axis (Table 1). Centrosymmetrically-related chains are further interacting through weak C—H···π interactions (Table 1).

Experimental

Acetylacetone (0.5 g, 0.5 mmol) and o-(bromomethyl)-benzonitrile (0.98 g, 0.5 mmol) were dissolved in methanol (30 ml) in the presence of KOH (0.28 g, 0.5 mmol) and the mixture refluxed for 24 h at 393K. After cooling to room temperature, most of the solvent was removed by vacuum filtration. Colourless crystals of the title compound suitable for X-ray diffraction analysis were obtained by slow evaporation of the remaining solvent.

Refinement

All H atoms were placed at calculated positions and allowed to ride on their parent atoms, with C—H = 0.93–0.97 Å, N—H = 0.86 Å, and with Uiso(H) = 1.2Ueq(C, N) or 1.5Ueq(C) for methyl H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

Packing diagram of the title compound. Intermolecular hydrogen bonds are shown as dashed lines.

Crystal data

C11H11NO F(000) = 368
Mr = 173.21 Dx = 1.249 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4430 reflections
a = 8.1794 (4) Å θ = 3.1–27.4°
b = 10.6905 (5) Å µ = 0.08 mm1
c = 10.5602 (6) Å T = 293 K
β = 93.783 (8)° Block, colourless
V = 921.39 (8) Å3 0.25 × 0.16 × 0.14 mm
Z = 4

Data collection

Rigaku SCXmini diffractometer 2108 independent reflections
Radiation source: fine-focus sealed tube 1385 reflections with I > 2σ(I)
graphite Rint = 0.049
Detector resolution: 13.6612 pixels mm-1 θmax = 27.5°, θmin = 3.1°
CCD profile fitting scans h = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) k = −13→13
Tmin = 0.980, Tmax = 0.989 l = −13→13
9369 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.171 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0814P)2 + 0.2011P] where P = (Fo2 + 2Fc2)/3
2108 reflections (Δ/σ)max < 0.001
119 parameters Δρmax = 0.21 e Å3
0 restraints Δρmin = −0.20 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C2 0.6932 (2) 0.90032 (19) −0.07286 (18) 0.0447 (5)
H2A 0.7446 0.8647 −0.1448 0.054*
H2B 0.5859 0.8630 −0.0672 0.054*
C4 0.7981 (2) 0.88190 (18) 0.04815 (17) 0.0393 (5)
C5 0.8500 (2) 0.76630 (18) 0.1034 (2) 0.0434 (5)
C6 0.8406 (2) 0.99769 (18) 0.10065 (17) 0.0363 (4)
C7 0.7680 (2) 1.09672 (19) 0.01929 (18) 0.0389 (5)
C8 0.5992 (3) 1.1144 (2) −0.1751 (2) 0.0584 (6)
H8 0.5401 1.0783 −0.2440 0.070*
C9 0.6815 (2) 1.0401 (2) −0.08348 (18) 0.0439 (5)
C10 0.6928 (3) 1.2986 (3) −0.0592 (2) 0.0629 (7)
H10 0.6952 1.3853 −0.0521 0.076*
C11 0.7750 (3) 1.2260 (2) 0.0329 (2) 0.0490 (6)
H11 0.8332 1.2626 0.1019 0.059*
C12 0.7998 (3) 0.6463 (2) 0.0355 (3) 0.0667 (7)
H12A 0.8792 0.5824 0.0570 0.100*
H12B 0.7939 0.6602 −0.0545 0.100*
H12C 0.6945 0.6204 0.0608 0.100*
C13 0.6070 (3) 1.2432 (2) −0.1617 (2) 0.0664 (7)
H13 0.5533 1.2936 −0.2231 0.080*
N1 0.9314 (2) 1.01839 (16) 0.20784 (15) 0.0490 (5)
H1A 0.9702 0.9564 0.2522 0.059*
H1B 0.9512 1.0938 0.2328 0.059*
O2 0.93402 (18) 0.75969 (13) 0.20655 (14) 0.0527 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C2 0.0439 (11) 0.0511 (13) 0.0384 (11) 0.0004 (9) −0.0018 (8) −0.0056 (9)
C4 0.0376 (10) 0.0419 (11) 0.0383 (10) −0.0022 (8) 0.0014 (8) −0.0035 (8)
C5 0.0434 (11) 0.0401 (12) 0.0470 (12) −0.0014 (9) 0.0046 (9) −0.0010 (8)
C6 0.0332 (9) 0.0403 (11) 0.0354 (10) −0.0004 (8) 0.0023 (7) 0.0010 (8)
C7 0.0346 (9) 0.0424 (11) 0.0399 (11) 0.0010 (8) 0.0036 (8) 0.0024 (8)
C8 0.0553 (13) 0.0740 (18) 0.0446 (13) 0.0109 (12) −0.0053 (10) 0.0031 (11)
C9 0.0392 (10) 0.0544 (14) 0.0380 (11) 0.0049 (9) 0.0023 (8) 0.0025 (9)
C10 0.0714 (16) 0.0487 (13) 0.0685 (17) 0.0096 (12) 0.0037 (13) 0.0164 (12)
C11 0.0484 (12) 0.0456 (14) 0.0526 (12) 0.0016 (10) 0.0007 (9) 0.0042 (10)
C12 0.0854 (18) 0.0415 (13) 0.0719 (16) −0.0014 (12) −0.0041 (13) −0.0100 (11)
C13 0.0691 (16) 0.0700 (17) 0.0593 (15) 0.0214 (13) −0.0016 (12) 0.0218 (12)
N1 0.0605 (11) 0.0381 (9) 0.0461 (10) −0.0026 (8) −0.0137 (8) 0.0000 (7)
O2 0.0660 (10) 0.0415 (8) 0.0493 (9) 0.0033 (7) −0.0075 (7) 0.0062 (6)

Geometric parameters (Å, °)

C2—C9 1.501 (3) C8—C9 1.391 (3)
C2—C4 1.505 (3) C8—H8 0.9300
C2—H2A 0.9700 C10—C11 1.383 (3)
C2—H2B 0.9700 C10—C13 1.384 (3)
C4—C6 1.391 (3) C10—H10 0.9300
C4—C5 1.420 (3) C11—H11 0.9300
C5—O2 1.251 (2) C12—H12A 0.9600
C5—C12 1.513 (3) C12—H12B 0.9600
C6—N1 1.331 (2) C12—H12C 0.9600
C6—C7 1.464 (3) C13—H13 0.9300
C7—C11 1.391 (3) N1—H1A 0.8600
C7—C9 1.394 (3) N1—H1B 0.8600
C8—C13 1.385 (4)
C9—C2—C4 102.92 (15) C8—C9—C7 119.4 (2)
C9—C2—H2A 111.2 C8—C9—C2 130.2 (2)
C4—C2—H2A 111.2 C7—C9—C2 110.33 (17)
C9—C2—H2B 111.2 C11—C10—C13 120.5 (3)
C4—C2—H2B 111.2 C11—C10—H10 119.7
H2A—C2—H2B 109.1 C13—C10—H10 119.7
C6—C4—C5 123.41 (18) C10—C11—C7 118.1 (2)
C6—C4—C2 109.61 (17) C10—C11—H11 121.0
C5—C4—C2 126.98 (18) C7—C11—H11 121.0
O2—C5—C4 122.65 (18) C5—C12—H12A 109.5
O2—C5—C12 118.77 (19) C5—C12—H12B 109.5
C4—C5—C12 118.6 (2) H12A—C12—H12B 109.5
N1—C6—C4 126.71 (18) C5—C12—H12C 109.5
N1—C6—C7 124.11 (17) H12A—C12—H12C 109.5
C4—C6—C7 109.18 (16) H12B—C12—H12C 109.5
C11—C7—C9 121.81 (19) C10—C13—C8 121.5 (2)
C11—C7—C6 130.23 (19) C10—C13—H13 119.2
C9—C7—C6 107.96 (18) C8—C13—H13 119.2
C13—C8—C9 118.7 (2) C6—N1—H1A 120.0
C13—C8—H8 120.7 C6—N1—H1B 120.0
C9—C8—H8 120.7 H1A—N1—H1B 120.0

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1A···O2 0.86 2.17 2.766 (2) 126
N1—H1B···O2i 0.86 2.09 2.924 (2) 164
C2—H2B···Cg1ii 0.97 2.77 3.631 (2) 148

Symmetry codes: (i) −x+2, y+1/2, −z+1/2; (ii) −x+1, −y+2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RZ2252).

References

  1. Choi, K. Y., Kim, Y. J., Ryu, H. & Suh, I. H. (1999). Inorg. Chem. Commun.2, 176–180.
  2. Ferguson, G. (1999). PRPKAPPA University of Guelph, Canada.
  3. Fu, D.-W. & Zhao, H. (2007). Acta Cryst. E63, m1630.
  4. Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808033485/rz2252sup1.cif

e-64-o2239-sup1.cif (14.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033485/rz2252Isup2.hkl

e-64-o2239-Isup2.hkl (103.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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